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rPackages: CRAN and BioC update

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Justin Bedo 3 years ago
parent e3d4cf2414
commit 02c59ff6e0
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GPG Key ID: 2C18202C56C182BD
3 changed files with 366 additions and 309 deletions
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  1. 2
      pkgs/development/r-modules/bioc-experiment-packages.nix
  2. 38
      pkgs/development/r-modules/bioc-packages.nix
  3. 635
      pkgs/development/r-modules/cran-packages.nix

2
pkgs/development/r-modules/bioc-experiment-packages.nix generated
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@ -389,7 +389,7 @@ in with self; {
signatureSearchData = derive2 { name="signatureSearchData"; version="1.8.0"; sha256="13xfdg3si14zmrbib691301hhxxj3d3xyfkab5l4skspzgpd64cx"; depends=[affy Biobase dplyr ExperimentHub limma magrittr R_utils rhdf5 signatureSearch]; };
simpIntLists = derive2 { name="simpIntLists"; version="1.30.0"; sha256="0q2lqfhsjncdj42hblrh389j2m47x26nn58s31s1448pddhrp7z1"; depends=[]; };
spatialDmelxsim = derive2 { name="spatialDmelxsim"; version="1.0.0"; sha256="1h5crcjrzapj5j31285ana48g3b2iscxwlzxxdx9i03jsl39dlp8"; depends=[ExperimentHub SummarizedExperiment]; };
spatialLIBD = derive2 { name="spatialLIBD"; version="1.6.1"; sha256="1hczv6ndc6dvybx9ii8r0pnfc3j4491hfha41z1vi9cvlpixx2gs"; depends=[AnnotationHub benchmarkme BiocFileCache BiocGenerics cowplot DT ExperimentHub fields GenomicRanges ggplot2 golem IRanges jsonlite magick Matrix plotly png Polychrome RColorBrewer rtracklayer S4Vectors scater sessioninfo shiny shinyWidgets SingleCellExperiment SpatialExperiment SummarizedExperiment tibble viridisLite]; };
spatialLIBD = derive2 { name="spatialLIBD"; version="1.6.2"; sha256="03pig3w5cpcxdssza07x0la7d6h0kk0wkv6b5kz7wbjyhaibpcz3"; depends=[AnnotationHub benchmarkme BiocFileCache BiocGenerics cowplot DT ExperimentHub fields GenomicRanges ggplot2 golem IRanges jsonlite magick Matrix plotly png Polychrome RColorBrewer rtracklayer S4Vectors scater sessioninfo shiny shinyWidgets SingleCellExperiment SpatialExperiment SummarizedExperiment tibble viridisLite]; };
spqnData = derive2 { name="spqnData"; version="1.6.0"; sha256="0dwmgwz88g8fzpa2nl2zs4y32wrlf4ca142d8siak14wl089nm4y"; depends=[SummarizedExperiment]; };
stemHypoxia = derive2 { name="stemHypoxia"; version="1.30.0"; sha256="05jly60gg5xr9511jlymzbpjysapfz2qq81rxhdz7cjbjkkgvykr"; depends=[]; };
stjudem = derive2 { name="stjudem"; version="1.34.0"; sha256="005wy7b8naaph9krsdw234sk8fprccclnj7y4rfrs2f3lbrw4b2g"; depends=[]; };

38
pkgs/development/r-modules/bioc-packages.nix generated
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@ -42,7 +42,7 @@ in with self; {
AllelicImbalance = derive2 { name="AllelicImbalance"; version="1.32.0"; sha256="1s6arjd0nxgxyqy7vhqcb78k0ss7vwrhv41pm346hs1nyr5dkzaq"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gridExtra Gviz IRanges lattice latticeExtra nlme Rsamtools S4Vectors seqinr SummarizedExperiment VariantAnnotation]; };
AlphaBeta = derive2 { name="AlphaBeta"; version="1.8.0"; sha256="0ya3dqvdf8iyd5bscc9lc476vkc7kamiqgjvxhxl4ay5j4vn02nr"; depends=[BiocParallel data_table dplyr expm ggplot2 gtools igraph optimx plotly stringr]; };
AlpsNMR = derive2 { name="AlpsNMR"; version="3.4.0"; sha256="0h8y9hi97zbv3qzjskxh81qjarmwx2w790kpspljgxa214f58fzv"; depends=[assertthat baseline BiocParallel dplyr fs furrr future GGally ggplot2 ggrepel glue htmltools magrittr matrixStats mixOmics pcaPP plyr purrr readxl reshape2 rlang rmarkdown S4Vectors signal speaq stringr SummarizedExperiment tibble tidyr tidyselect vctrs writexl zip]; };
AnVIL = derive2 { name="AnVIL"; version="1.6.0"; sha256="1a4jjrwc8hmcaq35jzyf3k3pva1zisbsz1vdmv25qgjirf9m357h"; depends=[BiocManager dplyr futile_logger httr jsonlite rapiclient rlang tibble tidyr tidyselect]; };
AnVIL = derive2 { name="AnVIL"; version="1.6.1"; sha256="1dmkmxah7ahqnsdccn2bmw1i6jgn5igg0md4mzcnkz7khdl4wmr7"; depends=[BiocManager dplyr futile_logger httr jsonlite rapiclient rlang tibble tidyr tidyselect]; };
AnVILBilling = derive2 { name="AnVILBilling"; version="1.4.0"; sha256="0pg5r6qn18i91z2ixapdkranaacv9z8ljmdb33vdn2dqwv2w85b1"; depends=[bigrquery DBI dplyr DT ggplot2 lubridate magrittr plotly shiny shinytoastr]; };
AnVILPublish = derive2 { name="AnVILPublish"; version="1.4.1"; sha256="0jvh22kz9mg4r49mbzvbvzbn58lzj5mvk7qb4pizn4sd8xsbvmyq"; depends=[AnVIL httr jsonlite readr rmarkdown whisker yaml]; };
Anaquin = derive2 { name="Anaquin"; version="2.18.0"; sha256="0b9clpqy2jfhign30nab1369xswrkmqm6dx14mf6wjrvcl9xpm2s"; depends=[DESeq2 ggplot2 knitr locfit plyr qvalue ROCR]; };
@ -255,7 +255,7 @@ in with self; {
DEqMS = derive2 { name="DEqMS"; version="1.11.1"; sha256="0nm49sxxi0j4czly8rjyxp41wlcihbn802qmljs8x6y6wvp3464l"; depends=[ggplot2 limma matrixStats]; };
DEsingle = derive2 { name="DEsingle"; version="1.14.0"; sha256="0x0xnylf036k320r59pqa273i59jcwxiwsw4fyfqqrliyw7fxa4c"; depends=[bbmle BiocParallel gamlss MASS Matrix maxLik pscl VGAM]; };
DEsubs = derive2 { name="DEsubs"; version="1.20.0"; sha256="1b11hhs7r1r24z7w9mimj1bpj7y5j7i9vq9sw6ll2dlghyazc7di"; depends=[circlize DESeq2 EBSeq edgeR ggplot2 graph igraph jsonlite limma locfit Matrix NBPSeq pheatmap RBGL]; };
DExMA = derive2 { name="DExMA"; version="1.2.0"; sha256="0z8la638q8jij95bnyfrrjhv4abda5f3shr9jwg7g21kr3dx20rf"; depends=[Biobase DExMAdata GEOquery impute limma pheatmap plyr scales snpStats sva swamp]; };
DExMA = derive2 { name="DExMA"; version="1.2.1"; sha256="1afxv356bkswnbyh3mkf98xqq1arcgak980hkryn4i69531kkc0w"; depends=[Biobase bnstruct DExMAdata GEOquery impute limma pheatmap plyr scales snpStats sva swamp]; };
DFP = derive2 { name="DFP"; version="1.52.0"; sha256="1b3h4zsqp75ac6zq8yc73pila8khb57hlh5yj9md8kgxqcg4b447"; depends=[Biobase]; };
DIAlignR = derive2 { name="DIAlignR"; version="2.2.0"; sha256="1py41l19brb2z7iv1fj9jkw213pn5aqwiq47bz4iha4jb42rdn64"; depends=[ape bit64 data_table DBI dplyr ggplot2 magrittr mzR phangorn pracma Rcpp RcppEigen reticulate rlang RMSNumpress RSQLite signal tidyr zoo]; };
DMCFB = derive2 { name="DMCFB"; version="1.8.0"; sha256="03mg620cpn13avvd962akmjgd2d0ph7b7zgb22zcidsfk8q9znmh"; depends=[arm benchmarkme BiocParallel data_table fastDummies GenomicRanges IRanges MASS matrixStats rtracklayer S4Vectors speedglm SummarizedExperiment tibble]; };
@ -285,7 +285,7 @@ in with self; {
DelayedRandomArray = derive2 { name="DelayedRandomArray"; version="1.2.0"; sha256="1hi9pvxny8nm4akhshicksd04p7vflqa3m38k6kcs50slhgdp5ys"; depends=[BH DelayedArray dqrng Rcpp]; };
DelayedTensor = derive2 { name="DelayedTensor"; version="1.0.0"; sha256="0yg7r6j7r1sikc4wi6khh3dsbflzpj51sdh41q337lkmlxagwpbb"; depends=[BiocSingular DelayedArray DelayedRandomArray einsum HDF5Array irlba Matrix rTensor]; };
DepecheR = derive2 { name="DepecheR"; version="1.10.0"; sha256="1500jivij7zdycdd0i0b7mgp44w4z0hqnpzqbq8nhvzzdigic8x9"; depends=[beanplot doSNOW dplyr FNN foreach ggplot2 gmodels gplots MASS matrixStats mixOmics moments Rcpp RcppEigen reshape2 robustbase viridis]; };
DiffBind = derive2 { name="DiffBind"; version="3.4.0"; sha256="15p4jd9k520va6kzizkgsl4a18kh5r8i50qfdkv7xazsfhvxjm3i"; depends=[amap apeglm ashr BiocParallel DESeq2 dplyr GenomicAlignments GenomicRanges ggplot2 ggrepel gplots GreyListChIP IRanges lattice limma locfit RColorBrewer Rcpp Rhtslib Rsamtools S4Vectors SummarizedExperiment systemPipeR]; };
DiffBind = derive2 { name="DiffBind"; version="3.4.1"; sha256="1cjvq2b00mbwnbg8m0z31qmdliygskywc2nxf672qs99m74jjb76"; depends=[amap apeglm ashr BiocParallel DESeq2 dplyr GenomicAlignments GenomicRanges ggplot2 ggrepel gplots GreyListChIP IRanges lattice limma locfit RColorBrewer Rcpp Rhtslib Rsamtools S4Vectors SummarizedExperiment systemPipeR]; };
DiffLogo = derive2 { name="DiffLogo"; version="2.18.0"; sha256="1axpyjr86a176rgv9wnrk04dv9llgkw9vr7h00scr6jw77wqya4n"; depends=[cba]; };
Dino = derive2 { name="Dino"; version="1.0.0"; sha256="1k83rhva7bxk1w6qvvdhx0r95p9nbzfdm3m7g6wpyq3qp0ifx5xp"; depends=[BiocParallel BiocSingular Matrix matrixStats S4Vectors scran Seurat SingleCellExperiment SummarizedExperiment]; };
Director = derive2 { name="Director"; version="1.20.0"; sha256="1f0a8rkpz698c5a41j7ii7ahxxaqn92rhx8sh3q66gpv0br8h44g"; depends=[htmltools]; };
@ -406,12 +406,12 @@ in with self; {
GeneGA = derive2 { name="GeneGA"; version="1.44.0"; sha256="1d0igfgcvwiljsngaq3hmrzp03sgnj8ksrzaf8n2igpg1lz85b3n"; depends=[hash seqinr]; };
GeneGeneInteR = derive2 { name="GeneGeneInteR"; version="1.20.0"; sha256="0kbzp1fzygvv1wrknp5nb1cw9kxw7pm51m0m0bjcvqzqxn73g6ad"; depends=[data_table FactoMineR GenomicRanges igraph IRanges kernlab mvtnorm Rsamtools snpStats]; };
GeneMeta = derive2 { name="GeneMeta"; version="1.66.0"; sha256="0dri85vr0dspzq0px2x2j3y5sn9rvbzk02xk0vnxzpkgqfghg7xv"; depends=[Biobase genefilter]; };
GeneNetworkBuilder = derive2 { name="GeneNetworkBuilder"; version="1.36.0"; sha256="05kanbr69nf8pb5cqcg97r417lr2qzcg0av1n7vz4ds9wlsn5mc1"; depends=[graph htmlwidgets plyr Rcpp Rgraphviz rjson XML]; };
GeneNetworkBuilder = derive2 { name="GeneNetworkBuilder"; version="1.36.1"; sha256="0qw6ii1ca2rnznkhz9ffxdgfak39amp3w97970w6wyl1h15ax7lg"; depends=[graph htmlwidgets plyr Rcpp Rgraphviz rjson XML]; };
GeneOverlap = derive2 { name="GeneOverlap"; version="1.30.0"; sha256="18l5dc4xcy1xa2h3sfw92w9rq9v0mnclamjxmzs5fqi469y5mwmm"; depends=[gplots RColorBrewer]; };
GeneRegionScan = derive2 { name="GeneRegionScan"; version="1.50.0"; sha256="0bkhadr61i9jsfwp3i3clz4b0yjdav8rnnrmfplh86sq700y58v5"; depends=[affxparser Biobase Biostrings RColorBrewer S4Vectors]; };
GeneSelectMMD = derive2 { name="GeneSelectMMD"; version="2.38.0"; sha256="1nq6n4bp3ydgpjbsgg3222dd345l5z5yp4mvs4haps6wlc6bin4i"; depends=[Biobase limma MASS]; };
GeneStructureTools = derive2 { name="GeneStructureTools"; version="1.14.0"; sha256="1w7nckmjc4zg5a20f4hjqjavmkdwngkjp70akrf3bh1qmbvpdr2a"; depends=[Biostrings BSgenome_Mmusculus_UCSC_mm10 data_table GenomicRanges Gviz IRanges plyr rtracklayer S4Vectors stringdist stringr]; };
GeneTonic = derive2 { name="GeneTonic"; version="1.6.0"; sha256="03kv5fnpa6846akxn71aznn9xs65hl5fqpn2fgpnx91q3qwqgvp9"; depends=[AnnotationDbi backbone bs4Dash circlize colorspace colourpicker ComplexHeatmap dendextend DESeq2 dplyr DT dynamicTreeCut expm ggforce ggplot2 ggrepel GO_db igraph matrixStats plotly RColorBrewer rintrojs rlang rmarkdown S4Vectors scales shiny shinyAce shinycssloaders shinyWidgets SummarizedExperiment tidyr tippy viridis visNetwork]; };
GeneTonic = derive2 { name="GeneTonic"; version="1.6.1"; sha256="1kcl87bjjy933z8xkqc3nx5yy6b89f62iaf7p6hc69z4vw5xrydf"; depends=[AnnotationDbi backbone bs4Dash circlize colorspace colourpicker ComplexHeatmap dendextend DESeq2 dplyr DT dynamicTreeCut expm ggforce ggplot2 ggrepel GO_db igraph matrixStats plotly RColorBrewer rintrojs rlang rmarkdown S4Vectors scales shiny shinyAce shinycssloaders shinyWidgets SummarizedExperiment tidyr tippy viridis visNetwork]; };
GeneticsPed = derive2 { name="GeneticsPed"; version="1.56.0"; sha256="1gvk3wg5mqyc8j95l4djfc55ymv4i08az67znnly3r8376m07mqw"; depends=[gdata genetics MASS]; };
GenoGAM = derive2 { name="GenoGAM"; version="2.11.0"; sha256="058qix2h0zm2k9csmbdhci2wqih3lyggjj591cqn0ls2nv7bnyvj"; depends=[BiocParallel Biostrings data_table DelayedArray DESeq2 futile_logger GenomeInfoDb GenomicAlignments GenomicRanges HDF5Array IRanges Matrix Rcpp RcppArmadillo rhdf5 Rsamtools S4Vectors sparseinv SummarizedExperiment]; };
GenomeInfoDb = derive2 { name="GenomeInfoDb"; version="1.30.0"; sha256="1r0wblz9w4hqxm15wdssz0invx7hxhg3bnblkia6w3aazh30s6ns"; depends=[BiocGenerics GenomeInfoDbData IRanges RCurl S4Vectors]; };
@ -466,7 +466,7 @@ in with self; {
HilbertCurve = derive2 { name="HilbertCurve"; version="1.24.0"; sha256="1i6fm91y6dza021d5qc8s03x7qmalmm9bkmcj5rflbra5i6fzivz"; depends=[circlize GenomicRanges HilbertVis IRanges png polylabelr]; };
HilbertVis = derive2 { name="HilbertVis"; version="1.52.0"; sha256="1vwyzxdjngi1firr8kasiam576kwvlx82g1p7j27vlbs1libr9zk"; depends=[lattice]; };
HilbertVisGUI = derive2 { name="HilbertVisGUI"; version="1.52.0"; sha256="0db7chajaghg6wqawap05ckaadgxvcswzd14i4p6gmfq6j4zpk8g"; depends=[HilbertVis]; };
HubPub = derive2 { name="HubPub"; version="1.2.2"; sha256="1gmgvallb60jw0wy7lbcy8fv96fbjqkf6brvj2qjin5lwxs053yy"; depends=[available aws_s3 BiocManager biocthis dplyr fs usethis]; };
HubPub = derive2 { name="HubPub"; version="1.2.3"; sha256="1i53bnjgfvh5jbxfp5gmwvighfxjmg8jzqcxl165a6gplr0xx371"; depends=[available aws_s3 BiocManager biocthis dplyr fs usethis]; };
HumanTranscriptomeCompendium = derive2 { name="HumanTranscriptomeCompendium"; version="1.10.0"; sha256="0v0yshvay7z1dalilx4w1jnswrr96gmsm71srh0j1q91f7ikwds9"; depends=[S4Vectors shiny ssrch SummarizedExperiment]; };
HybridMTest = derive2 { name="HybridMTest"; version="1.38.0"; sha256="1p31y61gjii29pllwpyb27ii96ckkd4v78pddnvz9c8fq61bmk6k"; depends=[Biobase fdrtool MASS survival]; };
IHW = derive2 { name="IHW"; version="1.22.0"; sha256="0vgij5zyaw3fh7arkg4jy1mizsqzbkcsjl05mh3ng2bqh30kyqqx"; depends=[BiocGenerics fdrtool lpsymphony slam]; };
@ -704,7 +704,7 @@ in with self; {
PLPE = derive2 { name="PLPE"; version="1.54.0"; sha256="1njzm736b6lvh34hh58zbdm1ixgwmjk58dr916sda5d15bbpgqrf"; depends=[Biobase LPE MASS]; };
POMA = derive2 { name="POMA"; version="1.4.0"; sha256="11ihqijqys6yd2ns99892dyi677v1d5vv10w99n0ka1821i9jcsb"; depends=[broom caret clisymbols ComplexHeatmap crayon dplyr e1071 ggcorrplot ggplot2 ggraph ggrepel glasso glmnet impute knitr limma magrittr mixOmics MSnbase patchwork qpdf randomForest RankProd rmarkdown tibble tidyr vegan]; };
POWSC = derive2 { name="POWSC"; version="1.2.0"; sha256="159m2ds42dnvx9f2w2g9y4avjwq6n2fm4fq7v6rbyynf8hp4hwnw"; depends=[Biobase ggplot2 limma MAST pheatmap RColorBrewer SingleCellExperiment SummarizedExperiment]; };
PPInfer = derive2 { name="PPInfer"; version="1.20.3"; sha256="190rxfhwps19260wm51gyzk0ih8mi53drp6jq0jz5vldi0mr63si"; depends=[biomaRt fgsea ggplot2 httr igraph kernlab STRINGdb yeastExpData]; };
PPInfer = derive2 { name="PPInfer"; version="1.20.4"; sha256="06l0qifg0swbfjplqf4gvczadax7c47y3b5fwd1rbggc1q0pn3pb"; depends=[biomaRt fgsea ggplot2 httr igraph kernlab STRINGdb yeastExpData]; };
PREDA = derive2 { name="PREDA"; version="1.40.0"; sha256="0435857cg30410w1iqpqd15nwn9x43axw0n2w6pv2jwcxdn58gjj"; depends=[annotate Biobase lokern multtest]; };
PROMISE = derive2 { name="PROMISE"; version="1.46.0"; sha256="1pajvwr89jh7nn2myv5y24xk2k1vl6zs52lrla70v25xxhpmwwkk"; depends=[Biobase GSEABase]; };
PROPER = derive2 { name="PROPER"; version="1.26.0"; sha256="19rn1vad18sfdwgnyh9fv5hh70h4pvsy32rac393hd39wqqhmsl0"; depends=[edgeR]; };
@ -724,7 +724,7 @@ in with self; {
PhenStat = derive2 { name="PhenStat"; version="2.30.0"; sha256="0b423kkbyyjk4ns4pdwh1lag2k0v7wn17h4l4aca3zkjrsf5522n"; depends=[car corrplot ggplot2 graph knitr lme4 logistf MASS msgps nlme nortest pingr reshape SmoothWin]; };
PhenoGeneRanker = derive2 { name="PhenoGeneRanker"; version="1.2.0"; sha256="1x5fbipgsiz2ipg9yh2r8wr8w1s6q01vq4149gjjxgx779xz250n"; depends=[doParallel dplyr foreach igraph Matrix]; };
PhosR = derive2 { name="PhosR"; version="1.4.0"; sha256="0ssfvc9qqj25j48srjjissq034f7giddx45w236yssaynw3ykslr"; depends=[BiocGenerics circlize dendextend dplyr e1071 GGally ggdendro ggplot2 ggpubr ggtext igraph limma network pcaMethods pheatmap preprocessCore RColorBrewer reshape2 rlang ruv S4Vectors SummarizedExperiment tidyr]; };
PhyloProfile = derive2 { name="PhyloProfile"; version="1.8.0"; sha256="0j9i0h8dvqjhpx08rwjbrmfibvmzvf2wlj31db1radf7hbj10wxr"; depends=[ape BiocStyle bioDist Biostrings colourpicker data_table DT energy ExperimentHub ggplot2 gridExtra OmaDB pbapply plyr RColorBrewer RCurl shiny shinyBS shinyjs xml2 yaml zoo]; };
PhyloProfile = derive2 { name="PhyloProfile"; version="1.8.2"; sha256="112iv8q4aqhp6kxvbm3xkaw084ha2a0b784qiikphl033hwdai3d"; depends=[ape BiocStyle bioDist Biostrings colourpicker data_table DT energy ExperimentHub ggplot2 gridExtra OmaDB pbapply plyr RColorBrewer RCurl shiny shinyBS shinyjs xml2 yaml zoo]; };
Pi = derive2 { name="Pi"; version="2.6.0"; sha256="14bpqzwx59shx5467nj0g6wj58qh9zqhy1i9l1n1gk7wd52ig5ql"; depends=[BiocGenerics caret dnet dplyr GenomeInfoDb GenomicRanges ggnetwork ggplot2 ggrepel glmnet igraph IRanges lattice MASS Matrix osfr plot3D purrr randomForest RCircos readr ROCR scales supraHex tibble tidyr]; };
Pigengene = derive2 { name="Pigengene"; version="1.20.0"; sha256="1rdz2d5fy6gpdvzv5vfgxngwkag062i6bvvjqkyflabn0yijjpmi"; depends=[BiocStyle bnlearn C50 clusterProfiler DBI dplyr gdata ggplot2 GO_db graph impute MASS matrixStats openxlsx partykit pheatmap preprocessCore ReactomePA Rgraphviz WGCNA]; };
PloGO2 = derive2 { name="PloGO2"; version="1.6.0"; sha256="0i5b7nfifjx1ywvdq4mhvy3wzdg8cqdcc7sw1awsz9xfnrjnhcdp"; depends=[GO_db GOstats httr lattice openxlsx xtable]; };
@ -1026,10 +1026,10 @@ in with self; {
XCIR = derive2 { name="XCIR"; version="1.7.0"; sha256="0n42pw01wv1sk06hby9kwijx6zwaw4lrlpsa0wlkrkf323slkllw"; depends=[biomaRt data_table ggplot2 IRanges readxl S4Vectors seqminer VariantAnnotation]; };
XDE = derive2 { name="XDE"; version="2.40.0"; sha256="0f7liqy2gf6ka7wjj591yi8805m3nn21c440vz9iqsanszxnsi6q"; depends=[Biobase BiocGenerics genefilter GeneMeta gtools mvtnorm RColorBrewer siggenes]; };
XINA = derive2 { name="XINA"; version="1.12.0"; sha256="14j1rn3p7i0rlqkbbg0a6pyhb97ifzvsbw6vfxw9pna7zv7rbhsp"; depends=[alluvial ggplot2 gridExtra igraph mclust plyr STRINGdb]; };
XNAString = derive2 { name="XNAString"; version="1.2.0"; sha256="1rpcvn54a6s3iwmdg96rshilr1mqcb1nlbvzbyp5xi55km7iwm8i"; depends=[Biostrings BSgenome data_table formattable future_apply GenomicRanges IRanges Rcpp S4Vectors stringi stringr]; };
XNAString = derive2 { name="XNAString"; version="1.2.2"; sha256="0rc02n3dijcmfj9dr02zlvqr38vmjy3w2drj2fg8i7yrhqp51a9l"; depends=[Biostrings BSgenome data_table formattable future_apply GenomicRanges IRanges Rcpp S4Vectors stringi stringr]; };
XVector = derive2 { name="XVector"; version="0.34.0"; sha256="07r4qgmnifw9jk2srjg0cvl310j0f9y35jrg0zqhlvhmyhg6n2c0"; depends=[BiocGenerics IRanges S4Vectors zlibbioc]; };
Xeva = derive2 { name="Xeva"; version="1.10.0"; sha256="0c4ak66kl13gp18h1xahhfy9hhx0cpspncigdznjqpxwgrbs1qpf"; depends=[BBmisc Biobase ComplexHeatmap doParallel downloader ggplot2 nlme PharmacoGx Rmisc scales]; };
YAPSA = derive2 { name="YAPSA"; version="1.19.0"; sha256="0fgcbskz96p5815nywsnqv2gzn7g93m438hpd5rpg85srg4wrpdj"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 circlize ComplexHeatmap corrplot dendextend doParallel dplyr GenomeInfoDb GenomicRanges GetoptLong ggbeeswarm ggplot2 gridExtra gtrellis KEGGREST limSolve magrittr PMCMR pracma reshape2 SomaticSignatures VariantAnnotation]; };
YAPSA = derive2 { name="YAPSA"; version="1.20.1"; sha256="08r05fzpraggbxv15lx0b68kjlkysp0rcdlm6n9avzmlsdqplb2h"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 circlize ComplexHeatmap corrplot dendextend doParallel dplyr GenomeInfoDb GenomicRanges GetoptLong ggbeeswarm ggplot2 gridExtra gtrellis KEGGREST limSolve magrittr PMCMRplus pracma reshape2 SomaticSignatures VariantAnnotation]; };
a4 = derive2 { name="a4"; version="1.42.0"; sha256="0mkgim93441zxhn4wmbin9ydl94srsawis0xwx479l0byj88n07m"; depends=[a4Base a4Classif a4Core a4Preproc a4Reporting]; };
a4Base = derive2 { name="a4Base"; version="1.42.0"; sha256="0rddxnflvbc6z4sj2h8js8yfh0zhrrwj8fk00wicaqp4rkr5yaxy"; depends=[a4Core a4Preproc annaffy Biobase genefilter glmnet gplots limma mpm multtest]; };
a4Classif = derive2 { name="a4Classif"; version="1.42.0"; sha256="0q50d41n7drj5c9x6njyvzr6bj7glmkp1vpyz6cpj97j2v9nikwb"; depends=[a4Core a4Preproc Biobase glmnet pamr ROCR varSelRF]; };
@ -1102,7 +1102,7 @@ in with self; {
bigmelon = derive2 { name="bigmelon"; version="1.20.0"; sha256="0ksbmybi8wsg515b4k9ij1xqqk9i90pyap2wq5w3c49qgc0pqali"; depends=[Biobase BiocGenerics gdsfmt GEOquery illuminaio methylumi minfi wateRmelon]; };
bioCancer = derive2 { name="bioCancer"; version="1.22.0"; sha256="1iv7gvixbkfg1igac99ix1a6ah90fc8hsf2062ynazc9nsx9wh3k"; depends=[AlgDesign AnnotationDbi Biobase cgdsr clusterProfiler DiagrammeR DOSE dplyr DT geNetClassifier GO_db htmlwidgets org_Bt_eg_db org_Hs_eg_db plyr r_import radiant_data reactome_db ReactomePA shiny shinythemes tibble visNetwork XML]; };
bioDist = derive2 { name="bioDist"; version="1.66.0"; sha256="0y35c9sdq5x4q64ip0wgqz59mh01l71k1pp6n8vqbr667nwg0gdp"; depends=[Biobase KernSmooth]; };
bioassayR = derive2 { name="bioassayR"; version="1.32.0"; sha256="1nfp1alva6qim5rbhg9j9w97p2n4z21ghr4j489lqklkcs4d030f"; depends=[BiocGenerics ChemmineR DBI Matrix rjson RSQLite XML]; };
bioassayR = derive2 { name="bioassayR"; version="1.32.1"; sha256="0pa8d7p9asp36wddkg779i3b9m12rxik56c54bmclnammr0cz89i"; depends=[BiocGenerics ChemmineR DBI Matrix rjson RSQLite XML]; };
biobroom = derive2 { name="biobroom"; version="1.26.0"; sha256="034gbywrscv23kk1qnk7sc7dxdckmf60wh29fz65v1n28mkf180r"; depends=[Biobase broom dplyr tidyr]; };
biobtreeR = derive2 { name="biobtreeR"; version="1.6.0"; sha256="0m9gx2g5ishbbh7aqp09mpknhr7q1v5ap0s6xp6ccj01pz2gkk8s"; depends=[httpuv httr jsonlite stringi]; };
biocGraph = derive2 { name="biocGraph"; version="1.56.0"; sha256="0c7r0c1kx22dlwi6d1ldbkkbf53yi0p3vmgbwzrbkn3cina7bcxq"; depends=[BiocGenerics geneplotter graph Rgraphviz]; };
@ -1305,7 +1305,7 @@ in with self; {
epialleleR = derive2 { name="epialleleR"; version="1.2.0"; sha256="1zgwwzrg9ngsfq186qsmvgwxcz0b9avr8wk1yadjlrjc9avgh2d3"; depends=[BH BiocGenerics data_table GenomeInfoDb GenomicRanges Rcpp Rhtslib stringi SummarizedExperiment VariantAnnotation zlibbioc]; };
epidecodeR = derive2 { name="epidecodeR"; version="1.2.0"; sha256="1fy3i7djpj2inlcpa2h4n5hzp0q6a555sc5axg1jwxiala9l8siv"; depends=[dplyr EnvStats GenomicRanges ggplot2 ggpubr IRanges rstatix rtracklayer]; };
epigenomix = derive2 { name="epigenomix"; version="1.34.0"; sha256="0yyxm97cqyy9r6bxsw40dl8nh2f1lxw41w3i3av8lixp72wxy3ml"; depends=[beadarray Biobase BiocGenerics GenomeInfoDb GenomicRanges IRanges MCMCpack Rsamtools S4Vectors SummarizedExperiment]; };
epigraHMM = derive2 { name="epigraHMM"; version="1.2.0"; sha256="1m65d0dlp2lyrg1wh3c9wdcbd5p8pmm3w3z1x5hwcdj5ls9qfan5"; depends=[bamsignals csaw data_table GenomeInfoDb GenomicRanges ggplot2 ggpubr GreyListChIP IRanges limma magrittr MASS Matrix pheatmap Rcpp RcppArmadillo rhdf5 Rhdf5lib Rsamtools rtracklayer S4Vectors scales SummarizedExperiment]; };
epigraHMM = derive2 { name="epigraHMM"; version="1.2.1"; sha256="1cxj50wfvgcajxgnhk3gpdhql6z6jbmdaarw09ls0wvnga9sn24p"; depends=[bamsignals csaw data_table GenomeInfoDb GenomicRanges ggplot2 ggpubr GreyListChIP IRanges limma magrittr MASS Matrix pheatmap Rcpp RcppArmadillo rhdf5 Rhdf5lib Rsamtools rtracklayer S4Vectors scales SummarizedExperiment]; };
epihet = derive2 { name="epihet"; version="1.10.0"; sha256="086x87yzjmg0l95kd0mdxysqgdj7bmc4mr95h6mkyv70nsdfyfs4"; depends=[data_table doParallel EntropyExplorer foreach GenomicRanges ggplot2 igraph IRanges pheatmap qvalue ReactomePA Rtsne S4Vectors WGCNA]; };
epistack = derive2 { name="epistack"; version="1.0.0"; sha256="0g5v30v7afx5wppg1fxpqba0inn6k25ljy7x3fim6vcwdhdnl95n"; depends=[BiocGenerics GenomicRanges IRanges plotrix S4Vectors viridisLite]; };
epivizr = derive2 { name="epivizr"; version="2.24.0"; sha256="1xxs34580gm2l222qf9m63id8282n2vg41s8ng6mrrd239pxpv2f"; depends=[bumphunter epivizrData epivizrServer GenomeInfoDb GenomicRanges IRanges S4Vectors]; };
@ -1337,7 +1337,7 @@ in with self; {
ffpe = derive2 { name="ffpe"; version="1.38.0"; sha256="0l6g0k2fg3xxncqx33xfckv8wmkbvpf5qqixi3zm36qmpm9xqagb"; depends=[affy Biobase BiocGenerics lumi methylumi sfsmisc TTR]; };
fgga = derive2 { name="fgga"; version="1.2.0"; sha256="0hrvgim9xdqymar3qswwybmmv8qmr5glqssckz3lbd04mnf07icq"; depends=[BiocFileCache curl e1071 graph gRbase jsonlite RBGL]; };
fgsea = derive2 { name="fgsea"; version="1.20.0"; sha256="10flcdm4b1kxnsvhl4k6mwkzb1vbai33k291j8nsrhj2cl5l8gm9"; depends=[BH BiocParallel data_table fastmatch ggplot2 gridExtra Matrix Rcpp]; };
fishpond = derive2 { name="fishpond"; version="2.0.0"; sha256="11cg0fv67ykilr7vqlmcd1vcp4bqnknxhznxhnxlhfby5c68lbjk"; depends=[abind gtools jsonlite Matrix matrixStats qvalue Rcpp S4Vectors SingleCellExperiment SummarizedExperiment svMisc]; };
fishpond = derive2 { name="fishpond"; version="2.0.1"; sha256="057sa54c7p6vjza81xzvfr4s15yzylg6770l1sq0ncjsczfq87sz"; depends=[abind gtools jsonlite Matrix matrixStats qvalue Rcpp S4Vectors SingleCellExperiment SummarizedExperiment svMisc]; };
flagme = derive2 { name="flagme"; version="1.50.0"; sha256="187l1akzqawp6bqlshhixna0672y5pabcaaqk875a5llvbncixhq"; depends=[CAMERA gcspikelite gplots MASS SparseM xcms]; };
flowAI = derive2 { name="flowAI"; version="1.24.0"; sha256="12h4vbd3799i1g10jmf10lm1p0if4psx5ypzy64j4rndydhy449j"; depends=[changepoint flowCore ggplot2 knitr plyr RColorBrewer reshape2 rmarkdown scales]; };
flowBeads = derive2 { name="flowBeads"; version="1.32.0"; sha256="0834n338bsbjqpsy6g3idvvwx7bmmg7cd08hmna1vsnk4hl8fqim"; depends=[Biobase flowCore knitr rrcov xtable]; };
@ -1474,7 +1474,7 @@ in with self; {
iasva = derive2 { name="iasva"; version="1.12.0"; sha256="122zgn141lpgnybqxy3ml33nbi9hm1r87kyr0nl1i3mqb0gd9dvl"; depends=[BiocParallel cluster irlba SummarizedExperiment]; };
ibh = derive2 { name="ibh"; version="1.42.0"; sha256="1h1zqcwsmjk590gcwkzpqj0c9x2i85amg3q98a9qpirw9alr1vc8"; depends=[simpIntLists]; };
icetea = derive2 { name="icetea"; version="1.12.0"; sha256="0iy9ki661774334d5wpibc8k8ri4d6aw4y3a15yik5fdgxg1g2z1"; depends=[BiocGenerics BiocParallel Biostrings csaw DESeq2 edgeR GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges limma Rsamtools rtracklayer S4Vectors ShortRead SummarizedExperiment TxDb_Dmelanogaster_UCSC_dm6_ensGene VariantAnnotation]; };
ideal = derive2 { name="ideal"; version="1.18.0"; sha256="01fix9fwcm1mglpggrkgagy80fg6yh772k4a1m0i5pvm923wcggv"; depends=[AnnotationDbi base64enc BiocParallel DESeq2 dplyr DT GenomicRanges ggplot2 ggrepel GO_db goseq GOstats gplots heatmaply IHW IRanges knitr limma pcaExplorer pheatmap plotly rentrez rintrojs rlang rmarkdown S4Vectors shiny shinyAce shinyBS shinydashboard stringr SummarizedExperiment topGO UpSetR]; };
ideal = derive2 { name="ideal"; version="1.18.1"; sha256="0bpd2naxadn0qidzrw3aznva98fxkjpl1sx4nr7lzjdj1kkvc6pf"; depends=[AnnotationDbi base64enc BiocParallel DESeq2 dplyr DT GenomicRanges ggplot2 ggrepel GO_db goseq GOstats gplots heatmaply IHW IRanges knitr limma pcaExplorer pheatmap plotly rentrez rintrojs rlang rmarkdown S4Vectors shiny shinyAce shinyBS shinydashboard stringr SummarizedExperiment topGO UpSetR]; };
idiogram = derive2 { name="idiogram"; version="1.70.0"; sha256="1qpip00mjdmc5vk6ab830ma6p4i0rgz8zih452jsqcfjpgc7q4p4"; depends=[annotate Biobase plotrix]; };
idpr = derive2 { name="idpr"; version="1.4.0"; sha256="0zakv6rmi3n5b1yd232vmm6qzlmnqkjxqd69fj5blg7lr1jyknjn"; depends=[Biostrings dplyr ggplot2 jsonlite magrittr plyr rlang]; };
idr2d = derive2 { name="idr2d"; version="1.8.1"; sha256="1cbzyf9nwqgqvz03526v3hxgkrrpfs4m8ajw186cxa4h6kdm232x"; depends=[dplyr futile_logger GenomeInfoDb GenomicRanges ggplot2 idr IRanges magrittr reticulate scales stringr]; };
@ -1548,7 +1548,7 @@ in with self; {
mdp = derive2 { name="mdp"; version="1.14.0"; sha256="0q721w901pxyjygz63d7a39h762ngqk8dqhn0grad82n90bywx0m"; depends=[ggplot2 gridExtra]; };
mdqc = derive2 { name="mdqc"; version="1.56.0"; sha256="06yvmgn8qhh1lmm338sdp50jfw7v148sn2mwmcps3l56vh4bci74"; depends=[cluster MASS]; };
megadepth = derive2 { name="megadepth"; version="1.4.0"; sha256="0mg7n3990qv65rg624473ssccka0yjpgc20glrdc5saci891j44r"; depends=[cmdfun dplyr fs GenomicRanges magrittr readr xfun]; };
memes = derive2 { name="memes"; version="1.2.0"; sha256="0ry30wxp38iwbr70qmr5nj4s0c41j0srdfz1x08c9xnh948a67m8"; depends=[Biostrings cmdfun dplyr GenomicRanges ggplot2 ggseqlogo magrittr matrixStats patchwork processx purrr readr rlang tibble tidyr universalmotif usethis xml2]; };
memes = derive2 { name="memes"; version="1.2.2"; sha256="0419lyl7rw78dh18lc6lgnn3586fh58bg949h41vwh1p1ysbgz5z"; depends=[Biostrings cmdfun dplyr GenomicRanges ggplot2 ggseqlogo magrittr matrixStats patchwork processx purrr readr rlang tibble tidyr universalmotif usethis xml2]; };
meshes = derive2 { name="meshes"; version="1.20.0"; sha256="1mwdrpqj7vphb30ii958hglzr0h4z7nv99v5sqvgjql76m8z0hcg"; depends=[AnnotationDbi AnnotationHub DOSE enrichplot GOSemSim MeSHDbi yulab_utils]; };
meshr = derive2 { name="meshr"; version="2.0.0"; sha256="02c5lp08r5yvg5zz1lmxla8av9gp5gpgr6sc8jq715yf9w4s4xjl"; depends=[BiocGenerics BiocStyle Category fdrtool knitr markdown MeSHDbi rmarkdown RSQLite S4Vectors]; };
messina = derive2 { name="messina"; version="1.30.0"; sha256="1k00l4qq5jn6lkna7ch9dyycrgfs446hajwki836hm1bvdfsz2q9"; depends=[foreach ggplot2 plyr Rcpp survival]; };
@ -1714,7 +1714,7 @@ in with self; {
pathview = derive2 { name="pathview"; version="1.34.0"; sha256="1jdl81lvrsz03b1nws90nssf2clipipzaqvwm1pq57mvshnlnkjr"; depends=[AnnotationDbi graph KEGGgraph KEGGREST org_Hs_eg_db png Rgraphviz XML]; };
pathwayPCA = derive2 { name="pathwayPCA"; version="1.10.0"; sha256="01m2g8icx7gq4fpxxxm356wr8wc5dmq3lnvr1s5dj1qqm4hk70xr"; depends=[lars survival]; };
paxtoolsr = derive2 { name="paxtoolsr"; version="1.28.0"; sha256="0c72fp6nisv6j0rkzw4yip3f94wq990nkmaw3h7lv5r5gpj9b69x"; depends=[httr igraph jsonlite plyr R_utils rappdirs readr rJava rjson XML]; };
pcaExplorer = derive2 { name="pcaExplorer"; version="2.20.0"; sha256="0b4wskh6kyqrj3hn83jwcqdp92nzzw3y3r74j5q5ksvad03dl6al"; depends=[AnnotationDbi base64enc biomaRt DESeq2 DT genefilter GenomicRanges ggplot2 ggrepel GO_db GOstats heatmaply IRanges knitr limma NMF pheatmap plotly plyr rmarkdown S4Vectors scales shiny shinyAce shinyBS shinydashboard SummarizedExperiment threejs tidyr topGO]; };
pcaExplorer = derive2 { name="pcaExplorer"; version="2.20.1"; sha256="1ada0prp16yq21cvrgy19i570y6lsn2ph1s79vmmbw4q4i6xgcwx"; depends=[AnnotationDbi base64enc biomaRt DESeq2 DT genefilter GenomicRanges ggplot2 ggrepel GO_db GOstats heatmaply IRanges knitr limma NMF pheatmap plotly plyr rmarkdown S4Vectors scales shiny shinyAce shinyBS shinydashboard SummarizedExperiment threejs tidyr topGO]; };
pcaMethods = derive2 { name="pcaMethods"; version="1.86.0"; sha256="1fj2v6sna4lbw7ar9h93y2g4pzylqqp7760ih425gcai7s19xdrg"; depends=[Biobase BiocGenerics MASS Rcpp]; };
pcxn = derive2 { name="pcxn"; version="2.16.0"; sha256="1n61gn1k74k61rrfp340kjchafrfmfidslkqxdr0ijbacbp017qw"; depends=[pcxnData pheatmap]; };
pdInfoBuilder = derive2 { name="pdInfoBuilder"; version="1.58.0"; sha256="1vk0kppsg9vynwzflkv3frv16hsl43lpk9awr6x22a1frmpndj10"; depends=[affxparser Biobase BiocGenerics Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
@ -1743,7 +1743,7 @@ in with self; {
plgem = derive2 { name="plgem"; version="1.66.0"; sha256="06w8xlw4j1fc9ipdgw55dvhp07f04icmhr20lqzwwhqd5pskrra3"; depends=[Biobase MASS]; };
plier = derive2 { name="plier"; version="1.64.0"; sha256="1sw89kici1h2xfg7zvrfdm7b7iw5n3mzwhyz82676w2vk0lgkpn4"; depends=[affy Biobase]; };
plotGrouper = derive2 { name="plotGrouper"; version="1.12.0"; sha256="191grbs8sy8jfxz9a6vsp9qf3zaqppp23fcl5qdrmfzims9krhlw"; depends=[colourpicker dplyr egg ggplot2 ggpubr gridExtra gtable Hmisc magrittr readr readxl rlang scales shiny shinythemes stringr tibble tidyr]; };
plotgardener = derive2 { name="plotgardener"; version="1.0.3"; sha256="0ndmbmfpxnxkg8x58xljcpa80lrv1dy2sp2n0nrkp0fnw4ymvhcc"; depends=[curl data_table dplyr ggplotify plyranges purrr RColorBrewer Rcpp rlang strawr]; };
plotgardener = derive2 { name="plotgardener"; version="1.0.6"; sha256="1ayr0bqpp0mvbi824pzh3dpp7wlcv64rb8phrjv06ih1kvkvpzx2"; depends=[curl data_table dplyr ggplotify plyranges purrr RColorBrewer Rcpp rlang strawr]; };
plyranges = derive2 { name="plyranges"; version="1.14.0"; sha256="1s4zyr57x71v9ywdz6s27z158nhazwhmhkx3944l8zsqd5ciwnnc"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges IRanges magrittr rlang Rsamtools rtracklayer S4Vectors tidyselect]; };
pmm = derive2 { name="pmm"; version="1.26.0"; sha256="0vmkpqxf0lfgkbmyvham128201d33dv3wf9g31nrlwnxd0jcxszn"; depends=[lme4]; };
pmp = derive2 { name="pmp"; version="1.6.0"; sha256="15yggymqh329f2ibhmg9wmh76hbyn0gpz9k1cxzkvh787lss1w72"; depends=[ggplot2 impute matrixStats missForest pcaMethods reshape2 S4Vectors SummarizedExperiment]; };
@ -1925,7 +1925,7 @@ in with self; {
sigPathway = derive2 { name="sigPathway"; version="1.62.0"; sha256="1c46m1gbgiygcj8m65h8iwzk3fkp6nynd6rk1f5qdh7kw5ap28f9"; depends=[]; };
siggenes = derive2 { name="siggenes"; version="1.68.0"; sha256="1fymp5ci1nwkk5yfj7hli464xqvvlvzf2a5j0w3qkxly9hrymix9"; depends=[Biobase multtest scrime]; };
sights = derive2 { name="sights"; version="1.20.0"; sha256="03xfiwbxbj4nbbdd8cwgqb84gsp0zrlqz4qgz22rhjfm1gxg38j9"; depends=[ggplot2 lattice MASS qvalue reshape2]; };
signatureSearch = derive2 { name="signatureSearch"; version="1.8.0"; sha256="0vpz446qrdbq4b8rmxjkraffrn2zwx529xs32ddkvfsh3bcgqh05"; depends=[AnnotationDbi BiocGenerics BiocParallel clusterProfiler data_table DelayedArray DOSE dplyr ExperimentHub fastmatch fgsea ggplot2 GSEABase HDF5Array magrittr Matrix qvalue Rcpp reactome_db readr reshape2 rhdf5 RSQLite scales SummarizedExperiment visNetwork]; };
signatureSearch = derive2 { name="signatureSearch"; version="1.8.1"; sha256="0j6fqxsp36rvll8hfz61srdqxllgfv9d0jssi43916yigmd03ss4"; depends=[AnnotationDbi BiocGenerics BiocParallel clusterProfiler data_table DelayedArray DOSE dplyr ExperimentHub fastmatch fgsea ggplot2 GSEABase HDF5Array magrittr Matrix qvalue Rcpp reactome_db readr reshape2 rhdf5 RSQLite scales SummarizedExperiment visNetwork]; };
signeR = derive2 { name="signeR"; version="1.20.0"; sha256="1wsh5ik046baq0bsdy5i8f6vf10x2xyxqkmixp2f81nk0cwxxq1y"; depends=[BiocGenerics Biostrings class GenomeInfoDb GenomicRanges IRanges nloptr NMF PMCMRplus Rcpp RcppArmadillo VariantAnnotation]; };
sigsquared = derive2 { name="sigsquared"; version="1.26.0"; sha256="1l2p7psmaxff8b63mk59492dr4s0pmr2lnjp32gqs0a7g3s8ry9f"; depends=[Biobase survival]; };
similaRpeak = derive2 { name="similaRpeak"; version="1.26.0"; sha256="19d4qfk2qx5jmrfyr929lfwfa9a4b1n65aiclqhfiz9nwh2i6zgf"; depends=[R6]; };
@ -1992,7 +1992,7 @@ in with self; {
synapsis = derive2 { name="synapsis"; version="1.0.0"; sha256="1kqapzcd2zvmyaqshcrfxkkaf6k7kwaqnd6g4dhnjcf2wqnf6fs5"; depends=[EBImage]; };
synergyfinder = derive2 { name="synergyfinder"; version="3.2.2"; sha256="0kpvp0lamchbgs4p34pbq14y3zrmgk0pgil0qhsrm3kv1pizk1w8"; depends=[dplyr drc furrr future ggforce ggplot2 ggrepel gstat kriging lattice magrittr metR mice nleqslv pbapply plotly purrr reshape2 sp SpatialExtremes stringr tidyr tidyverse vegan]; };
synlet = derive2 { name="synlet"; version="1.24.0"; sha256="1xidxlkppap0x8h9iiyl78lcx50ckpg46n8pl49vz4435vd6grp2"; depends=[doBy dplyr ggplot2 magrittr RankProd RColorBrewer reshape2]; };
systemPipeR = derive2 { name="systemPipeR"; version="2.0.2"; sha256="0yy95gqss9mzqbab8rv2vy14vcn32kgnhlsl0ixqs60ckpfkh0pb"; depends=[BiocGenerics Biostrings crayon GenomicRanges ggplot2 htmlwidgets magrittr Rsamtools S4Vectors ShortRead stringr SummarizedExperiment yaml]; };
systemPipeR = derive2 { name="systemPipeR"; version="2.0.4"; sha256="0iw8j0pyf0qabckad7g2nh3cxl1wdy5kkiz4hxiy9xwafk5cz0jr"; depends=[BiocGenerics Biostrings crayon GenomicRanges ggplot2 htmlwidgets magrittr Rsamtools S4Vectors ShortRead stringr SummarizedExperiment yaml]; };
systemPipeShiny = derive2 { name="systemPipeShiny"; version="1.4.0"; sha256="0h803ijajf32igfknkaivlzrc323apzligq1j8ghpf02q7f5q830"; depends=[assertthat bsplus crayon dplyr drawer DT ggplot2 glue htmltools magrittr openssl plotly R6 rlang RSQLite rstudioapi shiny shinyAce shinydashboard shinydashboardPlus shinyFiles shinyjqui shinyjs shinytoastr shinyWidgets spsComps spsUtil stringr styler tibble vroom yaml]; };
systemPipeTools = derive2 { name="systemPipeTools"; version="1.2.0"; sha256="1n53nwb00zmrhb8h1fq4lqzdd87f74c4l1z24sid4xrjssylrnwr"; depends=[ape DESeq2 dplyr DT GGally ggplot2 ggrepel ggtree glmpca magrittr pheatmap plotly Rtsne SummarizedExperiment tibble]; };
tLOH = derive2 { name="tLOH"; version="1.2.0"; sha256="0k3lqlivxbv4gaipiskhpl34rjrmrn1x4243awxnvbhhvaqq5r50"; depends=[data_table dplyr GenomicRanges ggplot2 MatrixGenerics purrr scales VariantAnnotation]; };

635
pkgs/development/r-modules/cran-packages.nix generated
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