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R: regenerate CRAN and BIOC packages

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Closes https://github.com/NixOS/nixpkgs/pull/9037.
wip/yesman
Michel Kuhlmann 9 years ago committed by Peter Simons
parent 73ad191afb
commit 18cff91fb7
2 changed files with 627 additions and 494 deletions
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  1. 230
      pkgs/development/r-modules/bioc-packages.nix
  2. 891
      pkgs/development/r-modules/cran-packages.nix

230
pkgs/development/r-modules/bioc-packages.nix
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@ -21,12 +21,12 @@ AffyExpress = derive { name="AffyExpress"; version="1.35.0"; sha256="1ysn3c8mpnq
AffyRNADegradation = derive { name="AffyRNADegradation"; version="1.15.0"; sha256="0x7mwlzvcxplvijprch0anwbfmj1qkrxqd9rc6f4p0zf88z2csal"; depends=[affy]; };
AffyTiling = derive { name="AffyTiling"; version="1.27.0"; sha256="1jqil9hd10cwsqdlxjd7c8s0p9fvrfcqxiw8rfrq117c8dlgl7w6"; depends=[affxparser affy preprocessCore]; };
AgiMicroRna = derive { name="AgiMicroRna"; version="2.19.0"; sha256="1m1fi6pdqwnfn21a4i7psxdg12bn6bhvcsi43bhwlzxzkrz00257"; depends=[affy affycoretools Biobase limma preprocessCore]; };
AllelicImbalance = derive { name="AllelicImbalance"; version="1.7.17"; sha256="0fgqsdlnch5rh04pnzjypgba2n67j3m2aab2yddl0kf0wsmb8zwg"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Gviz IRanges lattice Rsamtools S4Vectors seqinr SummarizedExperiment VariantAnnotation]; };
AnalysisPageServer = derive { name="AnalysisPageServer"; version="1.1.2"; sha256="057xik4hxaqz1f9m8clq504xa4km2byag546iw20v6i0qa9s1dwi"; depends=[Biobase graph log4r rjson]; };
AllelicImbalance = derive { name="AllelicImbalance"; version="1.7.19"; sha256="09kjl7rka00vqysg13naqqcks5mjygg45yb6z6k1qmbc7xd19ggl"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Gviz IRanges lattice Rsamtools S4Vectors seqinr SummarizedExperiment VariantAnnotation]; };
AnalysisPageServer = derive { name="AnalysisPageServer"; version="1.1.3"; sha256="1k07v1flb7zvni6gmmpjrwl5hrs7adfhcjcg58vqj0b3nbij7aa0"; depends=[Biobase graph log4r rjson]; };
AnnotationDbi = derive { name="AnnotationDbi"; version="1.31.17"; sha256="04xkhqnr9hmgxihfhn35a6s68s8x5layl7mf5whwhwxmlcd76lx4"; depends=[Biobase BiocGenerics DBI IRanges RSQLite S4Vectors]; };
AnnotationForge = derive { name="AnnotationForge"; version="1.11.7"; sha256="00agvwzmnvs8vx2y62x5qd9y09045j74kk9kp69v8m1iqpigs1v0"; depends=[AnnotationDbi Biobase BiocGenerics DBI RSQLite S4Vectors]; };
AnnotationForge = derive { name="AnnotationForge"; version="1.11.15"; sha256="02z3kxqcn87ykdsxfzs9j0qzpjkb2k79sz89lxrggk24jxk0rr35"; depends=[AnnotationDbi Biobase BiocGenerics DBI RSQLite S4Vectors]; };
AnnotationFuncs = derive { name="AnnotationFuncs"; version="1.19.0"; sha256="1qjvkbqpyhwibdqv1c4n2z5wjnzx0h3kdas3fs33jhb597bxhl1y"; depends=[AnnotationDbi]; };
AnnotationHub = derive { name="AnnotationHub"; version="2.1.28"; sha256="055biw0izf0la405igpp22azgharwhr6xfks32lr4dgbh8n70qjd"; depends=[AnnotationDbi BiocGenerics BiocInstaller httr interactiveDisplayBase RSQLite S4Vectors]; };
AnnotationHub = derive { name="AnnotationHub"; version="2.1.31"; sha256="1kc60na1k0ycams6sbs9p282z4qs7y409yv60rzszr5k7vfgqbrz"; depends=[AnnotationDbi BiocGenerics BiocInstaller httr interactiveDisplayBase RSQLite S4Vectors]; };
ArrayExpress = derive { name="ArrayExpress"; version="1.29.1"; sha256="0gyckxsmmh81ykf7mj952h2a4z58xrf9lbnmv884hz7zj317lf83"; depends=[affy Biobase limma XML]; };
ArrayExpressHTS = derive { name="ArrayExpressHTS"; version="1.19.0"; sha256="0qyd9jhkvw4lxqjvix28yzdx08hi7vf77ynlqxcl2q1lb3gmbxar"; depends=[Biobase BiocGenerics biomaRt Biostrings bitops DESeq edgeR GenomicRanges Hmisc IRanges R2HTML RColorBrewer rJava Rsamtools sampling sendmailR ShortRead snow svMisc XML]; };
ArrayTV = derive { name="ArrayTV"; version="1.7.0"; sha256="11dlq4lmzw0x8z2qrxff6xlcilp95nd71jpdvg3i5yni3ws6z5m1"; depends=[DNAcopy foreach oligoClasses]; };
@ -41,14 +41,14 @@ BEclear = derive { name="BEclear"; version="1.1.0"; sha256="1icaxkxwr2rkii4fffln
BGmix = derive { name="BGmix"; version="1.29.0"; sha256="0s2s6ylbw2wvdkn28842ghsflhcmcn156zw3fxmbdnz7xs29qs1f"; depends=[KernSmooth]; };
BHC = derive { name="BHC"; version="1.21.0"; sha256="0f8qqid4qxw52zjvvm024wcmn0afr7avkr4hr2jfyvs0ga49khx8"; depends=[]; };
BRAIN = derive { name="BRAIN"; version="1.15.0"; sha256="09yd3xf3h85wdf56p38mnspyqbswl2v8zb81yg0a008p0l5ax8xr"; depends=[Biostrings lattice PolynomF]; };
BSgenome = derive { name="BSgenome"; version="1.37.3"; sha256="1a0qk3lh2qhynsink8ysc16d4pmam2midakh26adn1hqrf6n22gb"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools rtracklayer S4Vectors XVector]; };
BSgenome = derive { name="BSgenome"; version="1.37.4"; sha256="09vwkl517nnq9krxwyaf70xaqnk3r3ddxdd834pwrhyij7r49sqr"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools rtracklayer S4Vectors XVector]; };
BUS = derive { name="BUS"; version="1.25.0"; sha256="1n3s0pw4ijgh927mahwqybks8i6ysybp7xn4a86nrbpr2kqhznrd"; depends=[infotheo minet]; };
BaseSpaceR = derive { name="BaseSpaceR"; version="1.13.2"; sha256="17g87vfx6yy4cdqxchl9ig6s2vhnpfbarssw80ha6kbqw81jh55h"; depends=[RCurl RJSONIO]; };
Basic4Cseq = derive { name="Basic4Cseq"; version="1.5.1"; sha256="0a4b11rv5ilv84qqpvf320c3knaajg4hlby5km0zzms3vbisr4hi"; depends=[Biostrings caTools GenomicAlignments GenomicRanges RCircos]; };
BayesPeak = derive { name="BayesPeak"; version="1.21.0"; sha256="0mz00mk6gmc5g79iifn5hzfwf7s568n6s6wy46vrnnnnr3sk9w49"; depends=[IRanges]; };
BeadDataPackR = derive { name="BeadDataPackR"; version="1.21.1"; sha256="16dh7byvigd6161qznd1k9cz9hp0r50nbrd8nqlsh28zr60pvrj3"; depends=[]; };
BiGGR = derive { name="BiGGR"; version="1.5.0"; sha256="1q9m870pyhxd1627n94c259094k8jyrg22ni26qpnxkapj18lr0b"; depends=[hyperdraw hypergraph LIM rsbml stringr]; };
BiRewire = derive { name="BiRewire"; version="2.1.2"; sha256="08innw83yr3imrgklva9djjx3a5sd7mqfnb70ggi6hia729kar01"; depends=[igraph slam]; };
BiRewire = derive { name="BiRewire"; version="2.3.6"; sha256="1i2fn3lfc93gxy3llc6wwviq7pn3d3na556i2fl538ia66asm2ax"; depends=[igraph slam tsne]; };
BiSeq = derive { name="BiSeq"; version="1.9.2"; sha256="1z401p2y9sa2cs1zwnkvf3968nyv5c7wcbxvldjyl5dg04qw88wn"; depends=[betareg Biobase BiocGenerics Formula GenomeInfoDb GenomicRanges globaltest IRanges lokern rtracklayer S4Vectors SummarizedExperiment]; };
BicARE = derive { name="BicARE"; version="1.27.0"; sha256="19hslc78nijcs6gyxzzcd8856wa1gf5dsrvm4x6r9lprfrk7d7fb"; depends=[Biobase GSEABase multtest]; };
BioMVCClass = derive { name="BioMVCClass"; version="1.37.0"; sha256="1k4ba98cjaqhy33vsmflnwasi0vxr30dvj6861pz625m87fyp2g6"; depends=[Biobase graph MVCClass Rgraphviz]; };
@ -58,8 +58,8 @@ Biobase = derive { name="Biobase"; version="2.29.1"; sha256="12cckssh7x4dd8vaapp
BiocCaseStudies = derive { name="BiocCaseStudies"; version="1.31.0"; sha256="05nj9i9y8clf406bjcflj8lsrp9x9iw6my1bdqnxg3nv2krp37xn"; depends=[Biobase]; };
BiocCheck = derive { name="BiocCheck"; version="1.5.6"; sha256="0gpmrqvj31n73bqljf23wbsw3hp44hl3z1jhc2q86s3mw6hlcfip"; depends=[BiocInstaller biocViews codetools devtools graph httr knitr optparse]; };
BiocGenerics = derive { name="BiocGenerics"; version="0.15.3"; sha256="1wk7mr3jmjr2ljqqlmnpvb3x2cflkkhsyjl2cd4ns0gld4rmmm8x"; depends=[]; };
BiocInstaller = derive { name="BiocInstaller"; version="1.19.8"; sha256="1jmzvs3sv324n9j6j8mrjpc648650k0sv23xni09x55zq41nm672"; depends=[]; };
BiocParallel = derive { name="BiocParallel"; version="1.3.31"; sha256="0s47gbrj8cs8wpsac14nj2blqwwr2fkg8fsr61fz5v0j21wrk3kd"; depends=[futile_logger snow]; };
BiocInstaller = derive { name="BiocInstaller"; version="1.19.9"; sha256="14z4wgvry2mbbv847mlns6ff0irwfpyk1yfcxbr27wmlisk14wxz"; depends=[]; };
BiocParallel = derive { name="BiocParallel"; version="1.3.41"; sha256="1ri738840w5nprmh69k4n6lp5grw688anl6nz4xvczli3dbzampk"; depends=[futile_logger snow]; };
BiocStyle = derive { name="BiocStyle"; version="1.7.4"; sha256="0wlydy1a3pspnyjg5vl0657z620n5vlhx99hxisskbrsr026mhmg"; depends=[]; };
Biostrings = derive { name="Biostrings"; version="2.37.2"; sha256="0j6701qgrnphsy9p34sf3s6d91j1zbd824zwv9rsfdmdffbkqq3b"; depends=[BiocGenerics IRanges S4Vectors XVector zlibbioc]; };
BitSeq = derive { name="BitSeq"; version="1.13.0"; sha256="1d397bcdyi3d35l1q1661spm3xhr7hqlsrjr5a2ybsjs3wqkf4fj"; depends=[IRanges Rsamtools S4Vectors zlibbioc]; };
@ -73,7 +73,7 @@ BufferedMatrixMethods = derive { name="BufferedMatrixMethods"; version="1.33.0";
CAFE = derive { name="CAFE"; version="1.5.0"; sha256="1kzy0g0kwvzvlls316cpvwrvnv5m9vklzjjsiiykvfq1wd21s96f"; depends=[affy annotate Biobase biovizBase GenomicRanges ggbio ggplot2 gridExtra IRanges]; };
CAGEr = derive { name="CAGEr"; version="1.11.0"; sha256="1rz1r55aji1av70c661d7czwipxah9507h5i9hcngy84ic1m72f1"; depends=[beanplot BSgenome data_table GenomicRanges IRanges Rsamtools rtracklayer som VGAM]; };
CALIB = derive { name="CALIB"; version="1.35.0"; sha256="08fgzq80ws4i6i1ppbqxdq3ba9qfdv4h0dyi08f9k91kfh1y31x4"; depends=[limma]; };
CAMERA = derive { name="CAMERA"; version="1.25.0"; sha256="1nl5va3f436vwpcirhcpcph13s2vbh8965v8iizi29vk83gbyfza"; depends=[Biobase graph Hmisc igraph RBGL xcms]; };
CAMERA = derive { name="CAMERA"; version="1.25.1"; sha256="0g8w5g6kr1s039cyvxk3pkw1mbskrij2vlc657bbxvs6pb3h2mrm"; depends=[Biobase graph Hmisc igraph RBGL xcms]; };
CAnD = derive { name="CAnD"; version="1.1.1"; sha256="1zyp4z86fda83wdhjfdh1ck9ynvdvrrxcvdlgld7h4x295r35r3s"; depends=[ggplot2 reshape]; };
CFAssay = derive { name="CFAssay"; version="1.3.0"; sha256="04zgyvm0rrs780z1vn4zzrh3w01lnhaywyn5ar6dvxcyxnr2y3qs"; depends=[]; };
CGEN = derive { name="CGEN"; version="3.3.0"; sha256="03sdyw6z5xw9ndwkwdli7bz6v0ki8w2slx30v5lgm31lqgl4lpf6"; depends=[mvtnorm survival]; };
@ -97,7 +97,7 @@ COHCAP = derive { name="COHCAP"; version="1.7.0"; sha256="0clr1jh4jnq54phsnl90zf
COMPASS = derive { name="COMPASS"; version="1.7.2"; sha256="0c83fsrmi7d2888pa3lnln42mlbnjgvpxw337vdh3dar1185a5b0"; depends=[abind clue data_table knitr plyr RColorBrewer Rcpp scales]; };
CORREP = derive { name="CORREP"; version="1.35.0"; sha256="0hlij2ch8r3lv130hvyshb82lfqz2c7kr56bka1ghmg6jp0xf1n6"; depends=[e1071]; };
COSNet = derive { name="COSNet"; version="1.3.3"; sha256="0l9sn0cki0mxacxv0bwp3cczcl8rscx8g3lnr0r448f13j8198f4"; depends=[]; };
CRISPRseek = derive { name="CRISPRseek"; version="1.9.2"; sha256="1h004gznxrm2k3l4xdr6iyn97rkkh8n85phskiink815ysm2l9z4"; depends=[BiocGenerics Biostrings BSgenome seqinr]; };
CRISPRseek = derive { name="CRISPRseek"; version="1.9.3"; sha256="1k1divchymr19czc9j1l7bjmx8i48wbsxwj5n9l8gvjq1iw170r2"; depends=[BiocGenerics Biostrings BSgenome seqinr]; };
CRImage = derive { name="CRImage"; version="1.17.0"; sha256="1sab95gngwi7c333n9hnbd9fdvdy9i69pjpx5ic5799s7qr03llw"; depends=[aCGH DNAcopy e1071 EBImage foreach MASS sgeostat]; };
CSAR = derive { name="CSAR"; version="1.21.0"; sha256="1wn7zxmy5ssj2jkk2624j42yv67wdcigp5ksb6fc2kzpgnvqmxl1"; depends=[GenomeInfoDb GenomicRanges IRanges S4Vectors]; };
CSSP = derive { name="CSSP"; version="1.7.0"; sha256="1ydxj358sfaygzjvh0b042p7gymjyl7nr5cnxrh8c7x2mv2hdh4d"; depends=[]; };
@ -111,7 +111,7 @@ ChAMP = derive { name="ChAMP"; version="1.7.0"; sha256="0ll50qyq9k8x4bv30dap6g6l
ChIPQC = derive { name="ChIPQC"; version="1.5.2"; sha256="0g630lpzwfbg5hgicg0s906a3a6gidswmidszx0hmn3479fah74m"; depends=[Biobase BiocGenerics BiocParallel chipseq DiffBind GenomicAlignments GenomicRanges ggplot2 gtools IRanges Nozzle_R1 reshape2 Rsamtools S4Vectors]; };
ChIPXpress = derive { name="ChIPXpress"; version="1.11.0"; sha256="11aifr69ss1hakrhba985bwz6k1sqkpzvv7gnzn8cgqnzxyr2i6b"; depends=[affy biganalytics bigmemory Biobase frma GEOquery]; };
ChIPpeakAnno = derive { name="ChIPpeakAnno"; version="3.3.2"; sha256="0ww3ddnvdc561lhz27h8n3ywi1xpx1cbsqk2i8m5rkpykkkkr2dh"; depends=[AnnotationDbi BiocGenerics BiocInstaller biomaRt Biostrings BSgenome GenomicFeatures GenomicRanges graph IRanges limma multtest RBGL VennDiagram]; };
ChIPseeker = derive { name="ChIPseeker"; version="1.5.6"; sha256="0ppv51hd44h15mkw15samdq1awsh1kdfy5p87pj60nmvbl0qj39h"; depends=[AnnotationDbi BiocGenerics boot dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gplots gtools IRanges magrittr plotrix plyr RColorBrewer rtracklayer S4Vectors]; };
ChIPseeker = derive { name="ChIPseeker"; version="1.5.7"; sha256="013di1c8lam36pyn0bcbaynmwwd72gb1zkw6s7p2phvlm2krprv7"; depends=[AnnotationDbi BiocGenerics boot dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gplots gridBase gtools IRanges magrittr plotrix plyr RColorBrewer rtracklayer S4Vectors UpSetR]; };
ChIPseqR = derive { name="ChIPseqR"; version="1.23.2"; sha256="1k1vbck7kjyzzgm0hg8hxpq6zfg71rca76q3998fcnnlzsmgvcf4"; depends=[BiocGenerics Biostrings fBasics GenomicRanges HilbertVis IRanges S4Vectors ShortRead timsac]; };
ChIPsim = derive { name="ChIPsim"; version="1.23.1"; sha256="13kniwvwa49n1kc9114ljn1fmzaiyb2nh33if596llql60p7nd23"; depends=[Biostrings IRanges ShortRead XVector]; };
ChemmineOB = derive { name="ChemmineOB"; version="1.7.1"; sha256="04agfsdzccsvvvis6vy1gg83gfs4nrph950v6bbzgk15ki32rsjz"; depends=[BH BiocGenerics Rcpp zlibbioc]; };
@ -124,13 +124,13 @@ CoCiteStats = derive { name="CoCiteStats"; version="1.41.0"; sha256="0shp06qy8cv
CoGAPS = derive { name="CoGAPS"; version="2.3.2"; sha256="0jh5ij66x3isz67mj0jwypyshplk1l1p47n2hvwgq87xmjzv6c8p"; depends=[BH gplots RColorBrewer Rcpp]; };
CoRegNet = derive { name="CoRegNet"; version="1.5.0"; sha256="14yq1f005fcfmfp88h2fy05gdgbskjws11qbdh0ndx3sf93nzxm2"; depends=[arules igraph shiny]; };
CompGO = derive { name="CompGO"; version="1.5.0"; sha256="128ib7w0jxba0p32s796i864b73zjfxac56znd0v4wv4vxv3jiv6"; depends=[GenomicFeatures ggplot2 pathview pcaMethods RDAVIDWebService reshape2 Rgraphviz rtracklayer]; };
ComplexHeatmap = derive { name="ComplexHeatmap"; version="1.2.2"; sha256="0v1mj0n5gjdarwdrl9ir9gms0f3v0gplx4n34zvyszxivh4ph4jj"; depends=[circlize colorspace dendextend GetoptLong RColorBrewer]; };
ComplexHeatmap = derive { name="ComplexHeatmap"; version="1.2.5"; sha256="1016saqj8ykm8frwn4lsma1sp9zwlmyw9dd02abhi7bgqwgsd4p3"; depends=[circlize colorspace dendextend GetoptLong RColorBrewer]; };
ConsensusClusterPlus = derive { name="ConsensusClusterPlus"; version="1.23.0"; sha256="13iikfh234d2z4k487lb3shmnrfijygrf6gz3x481gba2psnbjyw"; depends=[Biobase cluster]; };
CopyNumber450k = derive { name="CopyNumber450k"; version="1.5.0"; sha256="0mjhmh4shgckv43zvg4yqr17jfi9p9xnc40fwy9fw9c4vjcfsvsj"; depends=[Biobase BiocGenerics DNAcopy minfi preprocessCore]; };
CopywriteR = derive { name="CopywriteR"; version="2.1.2"; sha256="0lja77qdfbsl9cc1nv4jbrjwiq8bb93ja6na8hqksrrm9g1qs4q4"; depends=[BiocParallel chipseq data_table DNAcopy futile_logger GenomeInfoDb GenomicAlignments GenomicRanges gtools IRanges matrixStats Rsamtools S4Vectors]; };
CopywriteR = derive { name="CopywriteR"; version="2.1.3"; sha256="0qhl3lbdf9fsm6hx45sk2nihikbzh08lbnwaz1as3wf5cx7zm08c"; depends=[BiocParallel chipseq data_table DNAcopy futile_logger GenomeInfoDb GenomicAlignments GenomicRanges gtools IRanges matrixStats Rsamtools S4Vectors]; };
CorMut = derive { name="CorMut"; version="1.11.0"; sha256="0s92bh3610frxbm0gqvlznay70dy7x61hvc0qgh6xmcyz0llx27g"; depends=[igraph seqinr]; };
Cormotif = derive { name="Cormotif"; version="1.15.0"; sha256="1v36ylwkxr6yqasckmmj2dkr7s72f39srhwvm93rs1rl7kw4dc4p"; depends=[affy limma]; };
CoverageView = derive { name="CoverageView"; version="1.5.1"; sha256="0qi8r6vw5c6kmlw12j81jmgn555wd51w80m80gm5n7hqnggpwkh4"; depends=[BiocGenerics GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors]; };
CoverageView = derive { name="CoverageView"; version="1.5.2"; sha256="1bxx35h9d7gwm5m16i4hkf54zghij95jfxxc46x83glccsirah2f"; depends=[BiocGenerics GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors]; };
DART = derive { name="DART"; version="1.17.1"; sha256="1z7lf4d9yjcyikq9j3348z5sxjqaly46c0ls7f9cl8nnqdpw7w42"; depends=[igraph]; };
DASiR = derive { name="DASiR"; version="1.9.0"; sha256="0b3b7kmhsd6bb1s57c89h495j1ax6779wfca112fq6ba3z4dih3n"; depends=[Biostrings GenomicRanges IRanges XML]; };
DAVIDQuery = derive { name="DAVIDQuery"; version="1.29.0"; sha256="0gvm6qjx8y61nbnbz66md74pfc4awj4900pjr8q1m5sip5yzbxj2"; depends=[RCurl]; };
@ -141,17 +141,18 @@ DEGraph = derive { name="DEGraph"; version="1.21.0"; sha256="17f04qngcx8y4glr5wi
DEGreport = derive { name="DEGreport"; version="1.4.0"; sha256="06l803iy18kkv05b4h46vmzws20c0735m6csfkn2vp3bik8xh4lp"; depends=[coda edgeR ggplot2 Nozzle_R1 plyr quantreg]; };
DEGseq = derive { name="DEGseq"; version="1.23.0"; sha256="0993f140wwv9z9l53f9g74x7l28bflxq7wdcbilfz7ijhh7isr7p"; depends=[qvalue samr]; };
DESeq = derive { name="DESeq"; version="1.21.0"; sha256="13f6phdf9g325dlpn38l7zrq3mzldhldil134acxi9p3l50bx23y"; depends=[Biobase BiocGenerics genefilter geneplotter lattice locfit MASS RColorBrewer]; };
DESeq2 = derive { name="DESeq2"; version="1.9.21"; sha256="0ywhakri35cz37zlwv760zgmk1z9ldivl0i24mawavccc0hcvrhk"; depends=[Biobase BiocGenerics BiocParallel genefilter geneplotter GenomicRanges ggplot2 Hmisc IRanges locfit Rcpp RcppArmadillo S4Vectors SummarizedExperiment]; };
DESeq2 = derive { name="DESeq2"; version="1.9.26"; sha256="0b7w0csg7q5nqbrmc83rviiwhahq88zlqmxwlkz5g01w9zzkgc80"; depends=[Biobase BiocGenerics BiocParallel genefilter geneplotter GenomicRanges ggplot2 Hmisc IRanges locfit Rcpp RcppArmadillo S4Vectors SummarizedExperiment]; };
DEXSeq = derive { name="DEXSeq"; version="1.15.9"; sha256="0ml4ibzhw38w0mfp0vdbbkisz40rw65yyd71q3ppj7jg4r4ch39a"; depends=[Biobase BiocGenerics BiocParallel biomaRt DESeq2 genefilter geneplotter GenomicRanges hwriter IRanges RColorBrewer Rsamtools statmod stringr]; };
DFP = derive { name="DFP"; version="1.27.0"; sha256="0xcipbhfzvrpbm6dh2y3lbvfbwpn4wly32sssfm702zik5wm9dy1"; depends=[Biobase]; };
DMRcaller = derive { name="DMRcaller"; version="1.1.1"; sha256="1g7q7cwivvb0m2y4fixvbxp51zfag1jv66bdlai3gawr94pcx56y"; depends=[GenomicRanges IRanges Rcpp RcppRoll S4Vectors]; };
DMRcate = derive { name="DMRcate"; version="1.5.0"; sha256="12q6if9lljia37zwhcc9fpcp9vhkp1qhzchpypwwyn2j4344bmp3"; depends=[limma minfi]; };
DMRcate = derive { name="DMRcate"; version="1.5.61"; sha256="0ss8zk2b1y83q49pv9fdm2rqw5hlnd189knfg1y8y0psfjhc9knp"; depends=[limma minfi]; };
DMRforPairs = derive { name="DMRforPairs"; version="1.5.0"; sha256="0d14qgx07xq7wa687a2znpfw0zcg8ccvxjawkjdbi6ayjwpb6zd7"; depends=[GenomicRanges Gviz R2HTML]; };
DNAcopy = derive { name="DNAcopy"; version="1.43.0"; sha256="1v1i4bfkblimdmazv29csqr46jaiv8lncihgywvq5wfn8ccr7xl9"; depends=[]; };
DOQTL = derive { name="DOQTL"; version="1.3.0"; sha256="0g3nyamqdhjg8105kcq6nsgjgqzcxkp04194j82v1xb31baj53bg"; depends=[annotate annotationTools Biobase BiocGenerics biomaRt corpcor GenomicRanges hwriter IRanges mclust QTLRel Rsamtools RUnit S4Vectors XML]; };
DOSE = derive { name="DOSE"; version="2.7.9"; sha256="0l0rkd7siz251pxgmfv4ijq1l68w3lkjlc83zmhf4ddjf3db07ig"; depends=[AnnotationDbi ggplot2 GOSemSim igraph plyr qvalue reshape2 scales]; };
DSS = derive { name="DSS"; version="2.7.2"; sha256="01czzgkx6rqpps93vfn8dg2n2hm2nkd887mc955z67845jkrgi2j"; depends=[Biobase bsseq]; };
DOSE = derive { name="DOSE"; version="2.7.10"; sha256="093gyplk5ylwndynlcvm8s44ra8b6i6xrkqswc7zprndkawc4bgp"; depends=[AnnotationDbi ggplot2 GOSemSim igraph plyr qvalue reshape2 scales]; };
DSS = derive { name="DSS"; version="2.8.1"; sha256="0nhrq05b5rsfdcxc96pdsppnfwz106k7xdxccgr0xjypbhm01hsk"; depends=[Biobase bsseq]; };
DTA = derive { name="DTA"; version="2.15.0"; sha256="0amibwj5mnm2plkf3ys8sgy4lpwr60fnvika0psdrahgb4blmkzp"; depends=[LSD scatterplot3d]; };
DeMAND = derive { name="DeMAND"; version="0.99.9"; sha256="013zwa4flbsf9rwlnbzhg1sgfqwvrr01v9bhgpk73kx312zg30sg"; depends=[KernSmooth]; };
DeconRNASeq = derive { name="DeconRNASeq"; version="1.11.0"; sha256="0665chwpbs2pw753nb2x65cs9r9ghb5123bsrzrv6pz2p3ni8yz7"; depends=[ggplot2 limSolve pcaMethods]; };
DiffBind = derive { name="DiffBind"; version="1.15.3"; sha256="1akx65vi8razwpfxnvilh4x1vb8qbsfr2q8lygsb3imfrrb83q44"; depends=[amap edgeR GenomicAlignments GenomicRanges gplots IRanges lattice limma locfit RColorBrewer Rsamtools SummarizedExperiment systemPipeR zlibbioc]; };
DirichletMultinomial = derive { name="DirichletMultinomial"; version="1.11.2"; sha256="01wmvs7alq7gy1nmb5gdbglfs51qdhwysbmmjvh7yyhb8dqbvrj4"; depends=[IRanges S4Vectors]; };
@ -159,8 +160,8 @@ DriverNet = derive { name="DriverNet"; version="1.9.0"; sha256="0visiafw9m7i0yy7
DrugVsDisease = derive { name="DrugVsDisease"; version="2.9.0"; sha256="1wmw1r0x7kkmp47743aq0pp71wamnf5gsk6bhz6rdvswzb12iyqk"; depends=[affy annotate ArrayExpress BiocGenerics biomaRt GEOquery limma qvalue RUnit xtable]; };
DupChecker = derive { name="DupChecker"; version="1.7.0"; sha256="02wwwnx3w8rxiassd62xr295paw8py9pqsk1396qb5k773l6bfxv"; depends=[R_utils RCurl]; };
DynDoc = derive { name="DynDoc"; version="1.47.0"; sha256="0gpmhqav4dx8p86pkh18fpmlki60zqaz00m2zhziiawigbrz41ph"; depends=[]; };
EBImage = derive { name="EBImage"; version="4.11.5"; sha256="15npg7r76avlxq036yis85b91bgl10y4wjjcdnrcn39dbvb50zav"; depends=[abind BiocGenerics fftwtools jpeg locfit png tiff]; };
EBSeq = derive { name="EBSeq"; version="1.9.2"; sha256="0n3y9ikamcfm786fvqp5b2b4g2fx8hvnicsx1sh4rvrpyab9f5jm"; depends=[blockmodeling gplots]; };
EBImage = derive { name="EBImage"; version="4.11.7"; sha256="1zddydckv3zy8wf0wh34g5yg8s1p255h66ym6lnw3l5id7v32wz8"; depends=[abind BiocGenerics fftwtools jpeg locfit png tiff]; };
EBSeq = derive { name="EBSeq"; version="1.9.3"; sha256="1xqh6zjip9y0s34hxvvxvvbvadmlv84s02vvq6s63gmaf3ra51b3"; depends=[blockmodeling gplots]; };
EBSeqHMM = derive { name="EBSeqHMM"; version="1.3.1"; sha256="0lyf363f1wfgacrj5cyq8n3f3ssl5q400mn2q94cpai6k0qmvgs1"; depends=[EBSeq]; };
EBarrays = derive { name="EBarrays"; version="2.33.0"; sha256="1zvfqf49chiks5vmj5ki89pvy14bm1cman47n3ybba1gg8z8mw94"; depends=[Biobase cluster lattice]; };
EBcoexpress = derive { name="EBcoexpress"; version="1.13.0"; sha256="0fl0a7xasqcwvjlgf3h51akyhwpras2865m2idz1nmacm42q1w79"; depends=[EBarrays mclust minqa]; };
@ -168,12 +169,12 @@ EDASeq = derive { name="EDASeq"; version="2.3.2"; sha256="0l1mmpy71pqqmqnx4xxn1v
EDDA = derive { name="EDDA"; version="1.7.0"; sha256="0dyyhnc9v232njqnrcaq78g2m1qws30qcf6bsswq2di235ymk2g0"; depends=[baySeq DESeq edgeR Rcpp ROCR snow]; };
ELBOW = derive { name="ELBOW"; version="1.5.0"; sha256="0lnc5hw2x4p9yd561w9dwplf7q2slcaghxsh5796bmyxjxhxanpy"; depends=[]; };
ELMER = derive { name="ELMER"; version="1.00.0"; sha256="1kb7rixq02cc0cwm52acji69p89jq07zsagg7a8qva6gshs94k86"; depends=[GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra IRanges minfi reshape S4Vectors]; };
EMDomics = derive { name="EMDomics"; version="1.1.0"; sha256="1i2dy2vqig0lkd13xy4yfwq58zyjiqavpmcvg6pvkh2l48ap1jds"; depends=[BiocParallel emdist ggplot2 matrixStats]; };
EMDomics = derive { name="EMDomics"; version="1.1.1"; sha256="1a74f1ip4i8a5msdwnas5wbqhzkww1j2wr2qp0qnxcrn01mw93pg"; depends=[BiocParallel emdist ggplot2 matrixStats]; };
ENCODExplorer = derive { name="ENCODExplorer"; version="1.1.3"; sha256="054cm1ldas26gv4xn16w3i25kykwnikj4s83g7sxxdij93m5rmlb"; depends=[jsonlite RSQLite]; };
ENVISIONQuery = derive { name="ENVISIONQuery"; version="1.17.0"; sha256="1dnlw62hwysij63yc856c2sncgfwdq0rpmcds6i6wigdcfd21w8q"; depends=[rJava XML]; };
ENmix = derive { name="ENmix"; version="1.1.6"; sha256="069dniqyg0pljbwnl24bv5kfdh5v2j9vbvyxc127ag1isggh9m7b"; depends=[Biobase doParallel foreach geneplotter impute MASS minfi preprocessCore sva wateRmelon]; };
ENmix = derive { name="ENmix"; version="1.1.7"; sha256="0p5ywjnm0xknr6k7bnkhcn69870f5wwlq70yfqiah7syqmyim67d"; depends=[Biobase doParallel foreach geneplotter impute MASS minfi preprocessCore sva wateRmelon]; };
EasyqpcR = derive { name="EasyqpcR"; version="1.11.1"; sha256="0s2jyg6b14wbyl0c1n89c7bi7p88g7s1rz8d830p9hh2x75ly6zj"; depends=[gWidgetsRGtk2 matrixStats plotrix plyr]; };
EnrichmentBrowser = derive { name="EnrichmentBrowser"; version="1.3.0"; sha256="1a6w3drh5x20wvxpx1cb5q2h9k6jh65v9hh81924lcp4baplpx31"; depends=[Biobase graph KEGGgraph KEGGREST limma MASS mixtools neaGUI qvalue RColorBrewer Rgraphviz safe SPIA stringr]; };
EnrichmentBrowser = derive { name="EnrichmentBrowser"; version="1.99.6"; sha256="17xchpf0ddxihz6p0lm0nhhyrbaahcar1phl842b30ccv877ibrs"; depends=[AnnotationDbi Biobase biocGraph biomaRt ComplexHeatmap DESeq2 EDASeq edgeR geneplotter graph GSEABase hwriter KEGGgraph KEGGREST limma MASS mixtools neaGUI npGSEA PathNet pathview ReportingTools Rgraphviz S4Vectors safe SPIA stringr SummarizedExperiment topGO]; };
ExiMiR = derive { name="ExiMiR"; version="2.11.0"; sha256="1gmfrn3jq4pz5wmijywhxr0kx79534fhrfnqyhjmqq3s9sjn2cbh"; depends=[affy affyio Biobase limma preprocessCore]; };
ExpressionView = derive { name="ExpressionView"; version="1.21.0"; sha256="026w9f119j26c1078nwg4rhfc54wlb3i56iy8bi0cjpvbm4p698f"; depends=[AnnotationDbi bitops caTools eisa isa2]; };
FEM = derive { name="FEM"; version="2.3.0"; sha256="112mmah33ar36cpqjwanrfyhdwjfympnvmxwirxbbnk0nfp9cvpr"; depends=[AnnotationDbi corrplot igraph impute limma marray Matrix]; };
@ -182,12 +183,12 @@ FISHalyseR = derive { name="FISHalyseR"; version="1.3.0"; sha256="0xnmww7ldyxghq
FRGEpistasis = derive { name="FRGEpistasis"; version="1.5.0"; sha256="1vvcphgirvghzjvic5yq6nl229ryc0y4kp5qd25kgspbcgblg01q"; depends=[fda MASS]; };
FlowRepositoryR = derive { name="FlowRepositoryR"; version="1.1.1"; sha256="1xxljbdbvxg1dbm82r86frw2bskmfrl6rv98xz0z4jfc0w4ag3pd"; depends=[RCurl XML]; };
FlowSOM = derive { name="FlowSOM"; version="1.1.0"; sha256="0k5pw46dbhm6nssr5szj251v3479xgky2iipihrdvp5lr5lhxilq"; depends=[BiocGenerics ConsensusClusterPlus flowCore igraph tsne]; };
FourCSeq = derive { name="FourCSeq"; version="1.3.4"; sha256="1csxfr23b3g1k54h4ksnhg7c7d6aw28v32lrrqyq7x7xls9cx2lg"; depends=[Biobase Biostrings DESeq2 fda GenomicAlignments GenomicRanges ggbio ggplot2 gtools LSD Matrix reshape2 Rsamtools rtracklayer SummarizedExperiment]; };
FourCSeq = derive { name="FourCSeq"; version="1.3.5"; sha256="1mjvgi1cbfi5brl7l0v8026hjjksh81kpslm6w6i6b1llcn1sf65"; depends=[Biobase Biostrings DESeq2 fda GenomicAlignments GenomicRanges ggbio ggplot2 gtools LSD Matrix reshape2 Rsamtools rtracklayer SummarizedExperiment]; };
FunciSNP = derive { name="FunciSNP"; version="1.11.0"; sha256="19kl14yzqr59ngrd5ygr858zbvx23rihlr4vw5bfdy9cgwlvlzab"; depends=[AnnotationDbi ChIPpeakAnno GenomicRanges ggplot2 IRanges plyr reshape Rsamtools rtracklayer scales snpStats VariantAnnotation]; };
GENE_E = derive { name="GENE.E"; version="1.9.0"; sha256="10c9mw9f619z2ai43qvagj7p1lsqpv90z8vzsyyxym614lvlqfzm"; depends=[RCurl rhdf5]; };
GENESIS = derive { name="GENESIS"; version="1.1.0"; sha256="01d3yc5rc4y22znr7zf980m458qvnmjxpml353k7bkwyz6xyn0fj"; depends=[GWASTools]; };
GEOmetadb = derive { name="GEOmetadb"; version="1.29.0"; sha256="1s9x3dbh61xisk5hwzqv3991savygdcwv5cww447w4bfgwffzplg"; depends=[GEOquery RSQLite]; };
GEOquery = derive { name="GEOquery"; version="2.35.4"; sha256="1ny592c1s36a1hkgaqqyss65c190bw5612l23qc9y9qhf4sarq38"; depends=[Biobase RCurl XML]; };
GEOquery = derive { name="GEOquery"; version="2.35.5"; sha256="0c1jyvl5sm0yjlk4ji8qjwxm4rqakmjz04aq6m8biyf04cdd2crk"; depends=[Biobase RCurl XML]; };
GEOsubmission = derive { name="GEOsubmission"; version="1.21.0"; sha256="1rr8k4myw7jibibclphj63hp4byk3v0cg37vnyc5b0iacdp8s9gn"; depends=[affy Biobase]; };
GEWIST = derive { name="GEWIST"; version="1.13.0"; sha256="1mlzyjggv0rh9xk9pifshhdri3vapvzk2h47g75wx57yfapamcwn"; depends=[car]; };
GGBase = derive { name="GGBase"; version="3.31.2"; sha256="0xbkj7dr7xaq3pj4jph5ii78c4ax5b0p6jqmvkv2hr3j70qk3mh2"; depends=[AnnotationDbi Biobase BiocGenerics digest genefilter GenomicRanges IRanges limma Matrix S4Vectors snpStats SummarizedExperiment]; };
@ -201,14 +202,14 @@ GOexpress = derive { name="GOexpress"; version="1.3.2"; sha256="151hqhyjaq3ggigi
GOstats = derive { name="GOstats"; version="2.35.1"; sha256="1almz6gc2xm3njz8pjvynpnniz7xdd8z5293cfvx91v11lz70v7f"; depends=[annotate AnnotationDbi AnnotationForge Biobase Category graph RBGL]; };
GOsummaries = derive { name="GOsummaries"; version="2.3.0"; sha256="09c4grz9ljwrz37yv9k6gna9zxk708vxfz2190xz7za0mrql1k3k"; depends=[ggplot2 gProfileR gtable limma plyr Rcpp reshape2]; };
GRENITS = derive { name="GRENITS"; version="1.21.0"; sha256="1lm0074dw0248vyj9wl99if489dx38ia8wscx61842jyi4qz7r2q"; depends=[ggplot2 Rcpp RcppArmadillo reshape2]; };
GSAR = derive { name="GSAR"; version="1.3.2"; sha256="0fqv6lwi94ibwjjv6g0qmc8plc0ghszvjpd73m88080jiaw44yfl"; depends=[igraph]; };
GSAR = derive { name="GSAR"; version="1.3.4"; sha256="1hgakyl4ply01m77ffy2vjflwzn5iqnfbsp4a4smi762innm5f3z"; depends=[igraph]; };
GSCA = derive { name="GSCA"; version="1.7.0"; sha256="1hv9r59fx1hbjnga26shb8crxji1bzmzjmwfbk1wrlm8dsikjnyg"; depends=[ggplot2 gplots RColorBrewer reshape2 rhdf5 shiny sp]; };
GSEABase = derive { name="GSEABase"; version="1.31.3"; sha256="1jq3s3pha624gns7d7yf8qqgzq0fm3qgjrkwdkxgbpc7b09baiz0"; depends=[annotate AnnotationDbi Biobase BiocGenerics graph XML]; };
GSEAlm = derive { name="GSEAlm"; version="1.29.0"; sha256="13ixp6vq9g9ag5rndc40gw64vny70zcj6lll7r7vz06p5i9b6kyk"; depends=[Biobase]; };
GSRI = derive { name="GSRI"; version="2.17.0"; sha256="158dipqi9mh79d42pv5qsa1gwxz660kl474rdnkd59rnxh7ziyf3"; depends=[Biobase fdrtool genefilter GSEABase les]; };
GSReg = derive { name="GSReg"; version="1.3.0"; sha256="07s60j68i1r64y8x8r1r9s6w020n41137cf2aj9hrsw6gn4ajh15"; depends=[]; };
GSVA = derive { name="GSVA"; version="1.17.0"; sha256="0rk1srk95qia5ap69c2lysgv7r8qh50f50v9b569d2v2vjb0hpq5"; depends=[Biobase BiocGenerics GSEABase]; };
GWASTools = derive { name="GWASTools"; version="1.15.12"; sha256="04k5grfbrcpwnxxpirzb7x9488q8sq19lg00yn4mhpr7y1znrmpc"; depends=[Biobase DBI DNAcopy gdsfmt GWASExactHW lmtest logistf ncdf quantsmooth RSQLite sandwich survival]; };
GWASTools = derive { name="GWASTools"; version="1.15.14"; sha256="1ir5czbs3z9myq8659xc15i61bk0yifwcdycbgzmfd9frf9mw8ji"; depends=[Biobase DBI DNAcopy gdsfmt GWASExactHW lmtest logistf ncdf quantsmooth RSQLite sandwich survival]; };
GeneAnswers = derive { name="GeneAnswers"; version="2.11.1"; sha256="15rf8syxhj3332d7f4jkvyby05r3iia7p1ryz1zv629waz6mr4nh"; depends=[annotate Biobase downloader Heatplus igraph MASS RBGL RColorBrewer RCurl RSQLite XML]; };
GeneExpressionSignature = derive { name="GeneExpressionSignature"; version="1.15.0"; sha256="0wni584412af8a2wzk5r8nf63grw86d6fk74cmwksirw2734mmqs"; depends=[Biobase PGSEA]; };
GeneGA = derive { name="GeneGA"; version="1.19.0"; sha256="0irfr4q55rda8acchgcqsksh6ija87fryj822nb3d4zklv9raqfv"; depends=[hash seqinr]; };
@ -222,23 +223,23 @@ GeneticsDesign = derive { name="GeneticsDesign"; version="1.37.0"; sha256="08awf
GeneticsPed = derive { name="GeneticsPed"; version="1.31.0"; sha256="17fs4gvirji3qp9ik480jpz6qrbq209sjhn57ipkaafvx7rw5j4i"; depends=[gdata genetics MASS]; };
GenoView = derive { name="GenoView"; version="1.3.0"; sha256="09k9xjmx3qmsfr3a4vrfgs73r0xsymf5m4gl0zjjk4cnfk7bs41v"; depends=[biovizBase GenomicRanges ggbio ggplot2 gridExtra]; };
GenomeGraphs = derive { name="GenomeGraphs"; version="1.29.0"; sha256="0kl2gapg7hnl4zfsamb3vwmj7z0vag7vd8viwh0pwqj0pd45dswa"; depends=[biomaRt]; };
GenomeInfoDb = derive { name="GenomeInfoDb"; version="1.5.8"; sha256="0kdz1mkn3ljwxcz6v0np7gbb7b7sqxfj80sxrah3bnck2bzg1yra"; depends=[BiocGenerics IRanges S4Vectors]; };
GenomicAlignments = derive { name="GenomicAlignments"; version="1.5.11"; sha256="1w4wmxcyj0ja9nkn35n5qhhax0b7sh4pjxk2hib71323y80mxlld"; depends=[BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors SummarizedExperiment]; };
GenomeInfoDb = derive { name="GenomeInfoDb"; version="1.5.9"; sha256="1mnskpj4qb6fyg7a6qkzs6cmxzn0bjff0zzgnp17bm94vx0334zh"; depends=[BiocGenerics IRanges S4Vectors]; };
GenomicAlignments = derive { name="GenomicAlignments"; version="1.5.12"; sha256="0p1vnkh5h8w69is254zkzpj5y2a9c2yc2s7lvqhkf861x6fgkz1l"; depends=[BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors SummarizedExperiment]; };
GenomicFeatures = derive { name="GenomicFeatures"; version="1.21.13"; sha256="1swk94rqpvfysr3x1r61ypq9vlw1ryc0iw0x6dazfjjchaln0h07"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings DBI GenomeInfoDb GenomicRanges IRanges RCurl RSQLite rtracklayer S4Vectors]; };
GenomicFiles = derive { name="GenomicFiles"; version="1.5.4"; sha256="13lglgxkqsxgi453dk56ry7amnv6lyddy74fnhhsqinj5ip9k3vw"; depends=[BiocGenerics BiocParallel GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; };
GenomicInteractions = derive { name="GenomicInteractions"; version="1.3.4"; sha256="1dh9l0abwfc9dkznvpnzsxlggifvh8zfcmb22mc36lnkq42r033d"; depends=[BiocGenerics data_table dplyr GenomeInfoDb GenomicRanges ggplot2 gridExtra igraph IRanges plotrix Rsamtools rtracklayer S4Vectors stringr]; };
GenomicRanges = derive { name="GenomicRanges"; version="1.21.16"; sha256="11s14ikk2pj3hycanyjv6s1pild3987gfvf4vnzm6a6ilmqsyqzy"; depends=[BiocGenerics GenomeInfoDb IRanges S4Vectors XVector]; };
GenomicInteractions = derive { name="GenomicInteractions"; version="1.3.6"; sha256="0003hd22c3nfdb5h84pvd754gcpj3b6flzg8nhf7d0s99nzddr6a"; depends=[BiocGenerics data_table dplyr GenomeInfoDb GenomicRanges ggplot2 gridExtra Gviz igraph IRanges Rsamtools rtracklayer S4Vectors stringr]; };
GenomicRanges = derive { name="GenomicRanges"; version="1.21.17"; sha256="1hp2knf1qnph62480hzmn68lxp193x4zv3b0yx2a7khj4sgy7566"; depends=[BiocGenerics GenomeInfoDb IRanges S4Vectors XVector]; };
GenomicTuples = derive { name="GenomicTuples"; version="1.3.1"; sha256="0i91qs1c84lyh0irhgnbnnvag0j3f48gfxxndk5x0yjf9kpa0hca"; depends=[Biobase BiocGenerics GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; };
Genominator = derive { name="Genominator"; version="1.23.0"; sha256="03pacbd3d5q7ykrflg258zcf8yfzm8kc976aw3d38q7agkia69h2"; depends=[BiocGenerics DBI GenomeGraphs IRanges RSQLite]; };
GlobalAncova = derive { name="GlobalAncova"; version="3.37.0"; sha256="1j35r39plsxlkla2bv7wvg0if5gs2mfy71g6zb65g6ml5cqws45r"; depends=[annotate AnnotationDbi corpcor globaltest]; };
GoogleGenomics = derive { name="GoogleGenomics"; version="1.1.1"; sha256="06mcg36x41k9s9ick6y3vrg5r4fnkz5qb77a7dh7kk2skinvzips"; depends=[Biostrings GenomeInfoDb GenomicAlignments GenomicRanges httr IRanges rjson Rsamtools S4Vectors VariantAnnotation]; };
GoogleGenomics = derive { name="GoogleGenomics"; version="1.1.3"; sha256="1y5jkxhrfi5gkckfmilqsshv5l5ql25iwpmqbr5slch1h4myskbl"; depends=[Biostrings GenomeInfoDb GenomicAlignments GenomicRanges httr IRanges rjson Rsamtools S4Vectors VariantAnnotation]; };
GraphAT = derive { name="GraphAT"; version="1.41.0"; sha256="1mjd54zy4l7ivy347zn5rv6gn65sjhxn2cxm417fm83hm542327l"; depends=[graph MCMCpack]; };
GraphAlignment = derive { name="GraphAlignment"; version="1.33.0"; sha256="14zxbw8cj12wr6c2a0a6mfskr9sqf6cdfyz0ccbzy91d1lnrxzdf"; depends=[]; };
GraphPAC = derive { name="GraphPAC"; version="1.11.0"; sha256="1p0rkc1qz0yf0lxyjfvrpd7nqky855kmhb1pdwxg3ckifnypw5mc"; depends=[igraph iPAC RMallow TSP]; };
GreyListChIP = derive { name="GreyListChIP"; version="1.1.1"; sha256="0kbl9m37aiyv6yrqg4z352k7dpdpxm7yywymjfa9gdd0rv1cy401"; depends=[BSgenome GenomeInfoDb GenomicAlignments GenomicRanges MASS Rsamtools rtracklayer]; };
Gviz = derive { name="Gviz"; version="1.13.3"; sha256="0qbad4r0k7j1z4gg785iv57azp9ljlxv5jngnk9kfif05rd3k7v3"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings biovizBase BSgenome digest GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges lattice latticeExtra matrixStats RColorBrewer Rsamtools rtracklayer S4Vectors XVector]; };
HCsnip = derive { name="HCsnip"; version="1.9.0"; sha256="14f881v776xn8lw4lvjc26s72laxs9zph902875f76ykbzygayd9"; depends=[Biobase clusterRepro coin fpc impute randomForestSRC sigaR sm survival]; };
HDTD = derive { name="HDTD"; version="1.3.2"; sha256="19kzd1sjl0riwisdbrsy9j2pd39lpxwmizrnnj65hrfv6dwaqsgq"; depends=[]; };
HDTD = derive { name="HDTD"; version="1.3.3"; sha256="0b9z2bkfislxn9w5bjcd5jcpby2yq5bhn6zxvylngjwqz98v30hl"; depends=[]; };
HELP = derive { name="HELP"; version="1.27.0"; sha256="1n2fj316ha2l941biyr9d56pry6n39drwa820rgyrwd116rzx79d"; depends=[Biobase]; };
HEM = derive { name="HEM"; version="1.41.0"; sha256="0qi6q305p0vdhyah3860dpd3z0lyyn6wn5x0m3mj3p739pk288ik"; depends=[Biobase]; };
HIBAG = derive { name="HIBAG"; version="1.5.0"; sha256="0rrpz4brij408szfmzv7gpk0hrhikjyx061gkamb02ry1my722j1"; depends=[]; };
@ -250,22 +251,23 @@ HTqPCR = derive { name="HTqPCR"; version="1.23.0"; sha256="0zp7jbnh5zbrqaq84q114
Harshlight = derive { name="Harshlight"; version="1.41.0"; sha256="12wpfg785dfn5gwp014dfzk9x8zqvr9qrrs0pq32by576knida5z"; depends=[affy altcdfenvs Biobase]; };
Heatplus = derive { name="Heatplus"; version="2.15.1"; sha256="1jcrajxvll0hhrsq8qvvyc1sj1nd3dm06n8q25qi9nacnfi865y7"; depends=[]; };
HiTC = derive { name="HiTC"; version="1.13.2"; sha256="1bkd680n81cd7sdji6gjjljxhlbsrdgn5hwpmi37i83hnryfgf5x"; depends=[Biostrings GenomeInfoDb GenomicRanges IRanges Matrix RColorBrewer rtracklayer]; };
HilbertCurve = derive { name="HilbertCurve"; version="0.99.1"; sha256="0nws4y2nc726z6igj3fdkrpv9l4i694g17nz3z1r006ss78gzzf2"; depends=[GenomicRanges HilbertVis IRanges png]; };
HilbertVis = derive { name="HilbertVis"; version="1.27.0"; sha256="1qcyzn86v0xhb9zc1vcia1n53i33sgncbb7lpink5llmjpalacq6"; depends=[lattice]; };
HilbertVisGUI = derive { name="HilbertVisGUI"; version="1.27.0"; sha256="03jxn398xv97mmvbpl0qymmydhm4i4c36qnw4s22ch7wy3h9x6h8"; depends=[HilbertVis]; };
HybridMTest = derive { name="HybridMTest"; version="1.13.0"; sha256="0r4j8yllxzwn5r2rvpkqx6w23836lmly8wlshib6p917ky0djw4s"; depends=[Biobase fdrtool MASS survival]; };
IMPCdata = derive { name="IMPCdata"; version="1.3.0"; sha256="003qvf47bcfcwxkw7zpzdvpnw7xhd2y12n9by2b1ns5i5jka754b"; depends=[rjson]; };
INPower = derive { name="INPower"; version="1.5.0"; sha256="0msz24bixp7b5a83n40675xq8fglrhbg8972a93x2k8jgb5gdh38"; depends=[mvtnorm]; };
INSPEcT = derive { name="INSPEcT"; version="0.99.8"; sha256="0pzh0xkh4py6rwnjqz4wqfnk2h08dp5q9gc4cgxls6gl3574i9ny"; depends=[Biobase BiocParallel deSolve GenomicFeatures GenomicRanges IRanges preprocessCore pROC rootSolve]; };
IONiseR = derive { name="IONiseR"; version="0.99.6"; sha256="1fzp7ncznqw7pmb4sh1qphrk0ham1158q71kiylggbm88wlisky3"; depends=[BiocGenerics Biostrings data_table dplyr ggplot2 magrittr rhdf5 ShortRead tidyr XVector]; };
IONiseR = derive { name="IONiseR"; version="0.99.7"; sha256="0b4lxdhajd4mhdnfa8c3zm8n5s398arrxjig2bv6il933lhxi6ps"; depends=[BiocGenerics Biostrings data_table dplyr ggplot2 magrittr rhdf5 ShortRead tidyr XVector]; };
IPPD = derive { name="IPPD"; version="1.17.0"; sha256="0afhz5ishr1my9gnksa4dl92lfnb2fnvdpsh3n7kj4j2s8xx0crc"; depends=[bitops digest MASS Matrix XML]; };
IRanges = derive { name="IRanges"; version="2.3.14"; sha256="0pg6zbdhhpk7h64nma9zrdjxvfk2nwad9b9x8y1qnkki8917a1xd"; depends=[BiocGenerics S4Vectors]; };
IRanges = derive { name="IRanges"; version="2.3.15"; sha256="0pvhvhsvqglym4ncg2aa0fbmrw32nj0givpippv43p9cywhglklw"; depends=[BiocGenerics S4Vectors]; };
ITALICS = derive { name="ITALICS"; version="2.29.0"; sha256="16l0wq7bxi3nz8f5hggnzddhg07vrcca480ygvmi03cxajxbjr9h"; depends=[affxparser DBI GLAD oligo oligoClasses]; };
IVAS = derive { name="IVAS"; version="1.1.0"; sha256="15jnmi40bsnyf5yw86gvqppv0g8250lsi74gsjzhm7gijhlxfnrm"; depends=[AnnotationDbi BiocGenerics doParallel foreach GenomeInfoDb GenomicFeatures GenomicRanges IRanges lme4 Matrix S4Vectors]; };
Icens = derive { name="Icens"; version="1.41.0"; sha256="1vi2hnzs8z5prggswa6wzr2y53jczkgg09f4vw0pjzkzi7p8bphy"; depends=[survival]; };
IdMappingAnalysis = derive { name="IdMappingAnalysis"; version="1.13.0"; sha256="1kwalcvb7cxkg89kz5hpk0cvsfzxz5g2cbiflrs2dyaxx96pm5gm"; depends=[Biobase boot mclust R_oo rChoiceDialogs RColorBrewer]; };
IdMappingRetrieval = derive { name="IdMappingRetrieval"; version="1.17.0"; sha256="0fclrkv53q9aq3xw95k25rw52sjzy40r37kajnrk0kc41cyzf2vv"; depends=[AffyCompatible biomaRt DAVIDQuery ENVISIONQuery R_methodsS3 R_oo rChoiceDialogs RCurl XML]; };
IdeoViz = derive { name="IdeoViz"; version="1.3.0"; sha256="1ynqg2a0jq23mlqzgf7k05jc2nkby8hkbc6h0p76ms33fwqj2qxz"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges RColorBrewer rtracklayer]; };
InPAS = derive { name="InPAS"; version="1.1.3"; sha256="1fyhrf1n7hb34l742d3jrjyyznhjvf6z8bdmjawsqr10dvk1j2mv"; depends=[AnnotationDbi BiocParallel BSgenome cleanUpdTSeq GenomeInfoDb GenomicFeatures GenomicRanges Gviz IRanges limma S4Vectors seqinr]; };
InPAS = derive { name="InPAS"; version="1.1.5"; sha256="1s9jx90r7g9v9ipnnld2kdrbhyjl0vdwbgism6ab2hbpdxc33w7k"; depends=[AnnotationDbi Biobase BiocParallel BSgenome cleanUpdTSeq depmixS4 GenomeInfoDb GenomicFeatures GenomicRanges Gviz IRanges limma preprocessCore S4Vectors seqinr]; };
IsoGeneGUI = derive { name="IsoGeneGUI"; version="2.5.0"; sha256="05k6qdnsr2aywdmhdlimx5axrk07mf14rvia10afhf56380sdf3s"; depends=[Biobase ff geneplotter goric Iso IsoGene jpeg multtest ORCME ORIClust orQA RColorBrewer Rcpp relimp tkrplot xlsx]; };
KCsmart = derive { name="KCsmart"; version="2.27.0"; sha256="1igsmg1l39yladz4dlc9j01nxkwfaciy575d7k6764jhrs6pv39m"; depends=[BiocGenerics KernSmooth multtest siggenes]; };
KEGGREST = derive { name="KEGGREST"; version="1.9.0"; sha256="0ms60slsf7lpw0yidpy47hyxi7cm9r0gyb0q6ajxv52vn9diz29v"; depends=[Biostrings httr png]; };
@ -277,6 +279,7 @@ LMGene = derive { name="LMGene"; version="2.25.0"; sha256="17djx1fkjxpmmp56vphcb
LPE = derive { name="LPE"; version="1.43.0"; sha256="13z3h3mabbwhb5p40a7hil0aq10mya1zqgb8qj2qwnc50sbmgjx2"; depends=[]; };
LPEadj = derive { name="LPEadj"; version="1.29.0"; sha256="1734ihzvid5bz2wyh7yskk7agd82xmw7dibzb7aivhcfyxs8g8p4"; depends=[LPE]; };
LVSmiRNA = derive { name="LVSmiRNA"; version="1.19.0"; sha256="1z74y8zbg5amsmslb309gi630v8qa1qqgj37214bv5g9ab8xajmj"; depends=[affy Biobase BiocGenerics limma MASS quantreg SparseM vsn zlibbioc]; };
LedPred = derive { name="LedPred"; version="1.0.0"; sha256="1wglgnl5y61g4jcqfgnf3gqvmfpdvcb6h43n44cv46icybdk0bzs"; depends=[akima e1071 GenomicRanges irr jsonlite plot3D plyr RCurl ROCR testthat]; };
LiquidAssociation = derive { name="LiquidAssociation"; version="1.23.0"; sha256="178gx8n0ga1ppjk368xacidms1rc2kn301fmdc8rwbcknwvxrwck"; depends=[Biobase geepack]; };
LowMACA = derive { name="LowMACA"; version="1.1.0"; sha256="0i0pka0jf1yq7vjw1kb9sd2p21gpy4pw855ap815k02i0n7jyny4"; depends=[Biostrings cgdsr data_table motifStack RColorBrewer reshape2 stringr]; };
M3D = derive { name="M3D"; version="1.3.5"; sha256="1pjfl0kdhzw9l59qzgxjkf60w0rjdswm8wc12cyk39190hnalh49"; depends=[BiSeq GenomicRanges IRanges]; };
@ -291,7 +294,7 @@ MEDME = derive { name="MEDME"; version="1.29.0"; sha256="1fpi4ri134ii28nfiq2p875
MEIGOR = derive { name="MEIGOR"; version="1.3.0"; sha256="1kif7m78w0w0qv4fqfby3rknqk56zk83dds3cm4pgv2cii61i9jy"; depends=[CNORode deSolve Rsolnp snowfall]; };
MGFM = derive { name="MGFM"; version="1.3.0"; sha256="1h2bi2cchfxl0z31pgj6q6pb1jnmqvjy7jv2khp80h7sdr65356i"; depends=[annotate AnnotationDbi]; };
MIMOSA = derive { name="MIMOSA"; version="1.7.1"; sha256="1gzm90ii18vvpfd2nnl34mcvbvi49ck4hd7c5yziac8m3gx2f9f2"; depends=[Biobase coda data_table Formula ggplot2 Kmisc MASS MCMCpack modeest plyr pracma Rcpp RcppArmadillo reshape scales testthat]; };
MLInterfaces = derive { name="MLInterfaces"; version="1.49.3"; sha256="1c7l9xwyx72hmv4rs24xm4bzj3lzaaj0ax71yw1p008rkgj8ifxz"; depends=[annotate Biobase BiocGenerics cluster fpc gdata genefilter ggvis htmltools MASS pls rda rpart sfsmisc shiny]; };
MLInterfaces = derive { name="MLInterfaces"; version="1.49.6"; sha256="1lm6sdw2svwqgnkxzy1sdl7y3mpdp42b94asn5fjxdsmmyy6im7d"; depends=[annotate Biobase BiocGenerics cluster fpc gbm gdata genefilter ggvis MASS pls RColorBrewer rda rgl rpart sfsmisc shiny]; };
MLP = derive { name="MLP"; version="1.17.0"; sha256="1wb6bzxn1paba2fxh62ldsfr4kr0nq2sy21v0pp0qwhfxndyzpdn"; depends=[affy AnnotationDbi gdata gmodels gplots gtools plotrix]; };
MLSeq = derive { name="MLSeq"; version="1.7.0"; sha256="0vc5rz4l574hmzwn3q7c4giib0lzs720j0j3alvarb3lmfzx9mhq"; depends=[Biobase caret DESeq2 edgeR limma randomForest]; };
MMDiff = derive { name="MMDiff"; version="1.9.0"; sha256="0xvnv024cv540m0jv9lrb4s5rvc0mq4gwp6wvdgpnsnqnwi9j556"; depends=[Biobase DiffBind GenomicRanges GMD IRanges Rsamtools]; };
@ -299,7 +302,7 @@ MPFE = derive { name="MPFE"; version="1.5.0"; sha256="123a6qg761j46bs1ckd6yyr2ig
MSGFgui = derive { name="MSGFgui"; version="1.3.0"; sha256="0r7izs3wpd7l9agrm3mrr3kmm00s9fzljsjxhk4pzxkjg1ran4hp"; depends=[MSGFplus mzID mzR shiny shinyFiles xlsx]; };
MSGFplus = derive { name="MSGFplus"; version="1.3.0"; sha256="0q75mygrd56kr9hrrxlmckkgvhcrgvpgvbjdxjmz6jaqp5wfbkf5"; depends=[mzID]; };
MSnID = derive { name="MSnID"; version="1.3.1"; sha256="0a0r2ikyb0spm110xzn3zzhl8g6xsvmh781d65f10l1iqnd2cqza"; depends=[Biobase data_table doParallel foreach iterators MSnbase mzID ProtGenerics R_cache Rcpp reshape2]; };
MSnbase = derive { name="MSnbase"; version="1.17.11"; sha256="1yrzmanv87rpahpqg40vqx23baahq41w3j7zag8chygr2xhxkjxy"; depends=[affy Biobase BiocGenerics BiocParallel digest ggplot2 impute IRanges lattice MALDIquant mzID mzR pcaMethods plyr preprocessCore ProtGenerics Rcpp reshape2 S4Vectors vsn]; };
MSnbase = derive { name="MSnbase"; version="1.17.12"; sha256="1yfkiphcn88dhjsj680jjj671jw1gxixhrg60sd8ri7j7b4z67as"; depends=[affy Biobase BiocGenerics BiocParallel digest ggplot2 impute IRanges lattice MALDIquant mzID mzR pcaMethods plyr preprocessCore ProtGenerics Rcpp reshape2 S4Vectors vsn]; };
MSstats = derive { name="MSstats"; version="2.7.0"; sha256="0zhv2c769biv6avb4csi7alabk76bfn0ykzwp0lc6ymzggbj9pil"; depends=[ggplot2 gplots limma lme4 marray MSnbase preprocessCore Rcpp reshape]; };
MVCClass = derive { name="MVCClass"; version="1.43.0"; sha256="1mbhfkvdkxw9xd76dd2pxk947w9wahwdsk9x1wcryrmwcdvaqqcz"; depends=[]; };
MantelCorr = derive { name="MantelCorr"; version="1.39.0"; sha256="0l255m63q9idv56svs5m5bc4izwqnm3jy2z3kka7sw4xcx13l39g"; depends=[]; };
@ -339,18 +342,19 @@ NetSAM = derive { name="NetSAM"; version="1.9.0"; sha256="1bdch37kk1clb8cyffrlcr
NormqPCR = derive { name="NormqPCR"; version="1.15.0"; sha256="0nfjnx5id04nbkda9v66418yzpp88mq2ijsfn8jyg0sfika405nl"; depends=[Biobase qpcR RColorBrewer ReadqPCR]; };
NuPoP = derive { name="NuPoP"; version="1.19.0"; sha256="1dpqmhbwr1l95vgjxlw3xayjxksa909xj05jbf4x3gafnlkkdvbk"; depends=[]; };
OCplus = derive { name="OCplus"; version="1.43.0"; sha256="1x7yqb6hkbglvr0kkq5s7caxambdvzc0f38gahq68wfsfwln7b49"; depends=[akima multtest]; };
OGSA = derive { name="OGSA"; version="0.99.7"; sha256="03iqpsp1864605yjc7ji064dkiia8y7m66jyi1mskha7hk5mqk5x"; depends=[Biobase gplots limma]; };
OLIN = derive { name="OLIN"; version="1.47.0"; sha256="19wjz96104rn88pdflixb790qhj24ff4s3hc09ldcii1pfzm0sdw"; depends=[limma locfit marray]; };
OLINgui = derive { name="OLINgui"; version="1.43.0"; sha256="0714bzbsmd7bsdm5zk05g83yy48z3rlazpv17xbn38ljpykawzjb"; depends=[marray OLIN tkWidgets widgetTools]; };
OSAT = derive { name="OSAT"; version="1.17.0"; sha256="1ky9xb5ls3xnzinsrxrgggb4r0fmm1q33vxb3ajav7nygyxijq0d"; depends=[]; };
OTUbase = derive { name="OTUbase"; version="1.19.0"; sha256="0xmp446v57z875lmjkg47f9hx961af9nda658v8qlbjxf1wjw9zb"; depends=[Biobase Biostrings IRanges S4Vectors ShortRead vegan]; };
OmicCircos = derive { name="OmicCircos"; version="1.7.0"; sha256="1xil5043hgpypaww1a1wvcxw9im9jmzgdp83p3z71giqiq36dvh4"; depends=[GenomicRanges]; };
OmicsMarkeR = derive { name="OmicsMarkeR"; version="1.1.0"; sha256="1fw6zfp5jrkvxjb6j48q3n1fqkm1qmmjjvmr70v93hi5jg0an8gy"; depends=[assertive caret caTools data_table DiscriMiner e1071 foreach gbm glmnet pamr permute plyr randomForest]; };
OmicsMarkeR = derive { name="OmicsMarkeR"; version="1.1.2"; sha256="09mdsvcp7n5qh845lpa1zsjk7jmbi0ni0601jlr1jija0hmkv1zx"; depends=[assertive assertive_base caret caTools data_table DiscriMiner e1071 foreach gbm glmnet pamr permute plyr randomForest]; };
OncoSimulR = derive { name="OncoSimulR"; version="1.99.5"; sha256="0pjn2kirf1b72fvqxjawxcbrsn42brhz09kjnywm611kap329dq2"; depends=[data_table graph gtools igraph Rcpp Rgraphviz]; };
OperaMate = derive { name="OperaMate"; version="0.99.6"; sha256="0xh57d82rmfcs1a6gj0qcjf585drhzns5k69bwxb7x1xw63wp4kp"; depends=[ggplot2 MASS pheatmap RDAVIDWebService]; };
OrderedList = derive { name="OrderedList"; version="1.41.0"; sha256="1cw8y5f5h15z0qwg8n4dq7g3ixx2wa332rdsb4w2qqmcqlz79bfp"; depends=[Biobase twilight]; };
OrganismDbi = derive { name="OrganismDbi"; version="1.11.42"; sha256="0y0v5ngall7iyvx2bqhfkxdnw9alkyab5f6qgpq8dpvr6pvyamyl"; depends=[AnnotationDbi Biobase BiocGenerics BiocInstaller GenomicFeatures GenomicRanges graph IRanges RBGL RSQLite S4Vectors]; };
OutlierD = derive { name="OutlierD"; version="1.33.0"; sha256="0bljxmrnlqcngzzv6yxjsim7gd4icyi384vimn5gs869mq9gyrj3"; depends=[Biobase quantreg]; };
PAA = derive { name="PAA"; version="1.3.2"; sha256="1p9900wiy5mmcmwb4l5n8kvsjs3ay6k0k551mpjbwijhk2si7wja"; depends=[e1071 limma MASS mRMRe randomForest Rcpp ROCR sva]; };
PAA = derive { name="PAA"; version="1.3.3"; sha256="1v5gw9f2glzsz05kqyvvhwzfdfj4ypwbfgy5q16lr1y64slabzq2"; depends=[e1071 limma MASS mRMRe randomForest Rcpp ROCR sva]; };
PADOG = derive { name="PADOG"; version="1.11.0"; sha256="0x84k32fmd1zrwjc4f71mq4jslh9bxr4gjbl48k1f5kl5j6hlxj3"; depends=[AnnotationDbi Biobase doRNG foreach GSA limma nlme]; };
PANR = derive { name="PANR"; version="1.15.0"; sha256="0nc2a10z7i16dz41yhz3zw9h51myxzxbxd1vpc2d8gczks07n6ch"; depends=[igraph MASS pvclust RedeR]; };
PAPi = derive { name="PAPi"; version="1.9.0"; sha256="1553fxm3ma3p5j10acyk5m2wx4dafp346x0pyxj9aah856h4zkw5"; depends=[KEGGREST svDialogs]; };
@ -378,7 +382,7 @@ ProCoNA = derive { name="ProCoNA"; version="1.7.0"; sha256="1x2wmlhlizd09v4d7q98
ProtGenerics = derive { name="ProtGenerics"; version="1.1.0"; sha256="1l77j3zl78v86jbxpwnyc0a5q66yds79nirlcvan789hxbggr0i4"; depends=[BiocGenerics]; };
Pviz = derive { name="Pviz"; version="1.3.0"; sha256="0pvmpxw4dpxxs9lrn9nn44rn36r3l09rwlkh5ph054h56nm80xs1"; depends=[Biostrings biovizBase data_table GenomicRanges Gviz IRanges]; };
QDNAseq = derive { name="QDNAseq"; version="1.5.1"; sha256="1gykm8r410s9aw75km0f8wnhd0p8gqirszp70g5x97n83r4k6rnq"; depends=[Biobase CGHbase CGHcall DNAcopy matrixStats R_utils Rsamtools]; };
QUALIFIER = derive { name="QUALIFIER"; version="1.13.0"; sha256="0vk3xx0dmxadxk1wmcnf9cxv7rr4z8624npkmdbqlzb6mxix7p6d"; depends=[Biobase data_table flowCore flowViz flowWorkspace hwriter lattice latticeExtra MASS ncdfFlow reshape XML]; };
QUALIFIER = derive { name="QUALIFIER"; version="1.13.1"; sha256="0b25cgjafs3k2kwbmbla713gxy9xbjclsx6k4pxydz5flz8w8grg"; depends=[Biobase data_table flowCore flowViz flowWorkspace hwriter lattice latticeExtra MASS ncdfFlow reshape XML]; };
QuartPAC = derive { name="QuartPAC"; version="1.1.0"; sha256="0w92hggwihp2nia9dzg8yjbfsyrcgwq4kpxh96jb8kkmq6kl2l8p"; depends=[data_table GraphPAC iPAC SpacePAC]; };
QuasR = derive { name="QuasR"; version="1.9.9"; sha256="13md1pq0bg9xdlhvwsys3f7ibqll80viica03h2l4cnhgw26zj52"; depends=[Biobase BiocGenerics BiocInstaller BiocParallel Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rbowtie Rsamtools rtracklayer S4Vectors ShortRead zlibbioc]; };
R3CPET = derive { name="R3CPET"; version="1.1.0"; sha256="0vwyrqsihnabzqh5r329v3f5zcg2ik51aakvscpp482z0dm2naqh"; depends=[clues clValid data_table DAVIDQuery GenomicRanges ggbio ggplot2 Hmisc igraph IRanges pheatmap Rcpp reshape2 S4Vectors]; };
@ -386,8 +390,8 @@ R453Plus1Toolbox = derive { name="R453Plus1Toolbox"; version="1.19.1"; sha256="0
RBGL = derive { name="RBGL"; version="1.45.1"; sha256="0y90pvl3i8pyzxwssciygcd1c1lb8a0rqhpiqgif56075amm71rl"; depends=[graph]; };
RBM = derive { name="RBM"; version="1.1.0"; sha256="03q7prkrj8y3k8jrnnbjrkmlyv72cxfa8l042df4wajhcbpa4g4l"; depends=[limma marray]; };
RBioinf = derive { name="RBioinf"; version="1.29.0"; sha256="1cyd18lz3h9b20g6s9azzv9rv9bachh3qsczz84y8lj4kay3qssx"; depends=[graph]; };
RCASPAR = derive { name="RCASPAR"; version="1.15.1"; sha256="125vrkz5gicizf0acpv0f0ijiky5my7rpfyim25vihcsz5fkb0w1"; depends=[]; };
RCyjs = derive { name="RCyjs"; version="1.1.12"; sha256="1gv31yj0ms7llsg2rca96rh77h1qw3hkjbiskzc3zmpycx5m9m8b"; depends=[BiocGenerics BrowserViz graph httpuv igraph jsonlite Rcpp]; };
RCASPAR = derive { name="RCASPAR"; version="1.15.2"; sha256="151mil4v8iz5lrn7827imvvnjh171qdgjg927fic3fwyfx0kkyqs"; depends=[]; };
RCyjs = derive { name="RCyjs"; version="1.1.18"; sha256="0d6zh2ryy9583i2cxahi4gl5ldp1r0yyyz8mjzklp47rkm2cxmkx"; depends=[BiocGenerics BrowserViz graph httpuv igraph jsonlite Rcpp]; };
RCytoscape = derive { name="RCytoscape"; version="1.19.0"; sha256="0yfmlksi7sz0p9nbgjz2cpqwbwyzzxij3zaqmkp3wqfdk89mxgi7"; depends=[BiocGenerics graph]; };
RDAVIDWebService = derive { name="RDAVIDWebService"; version="1.7.0"; sha256="07hnj7flfacg9j8c6155nw23zjxcb1v4wj4rkfi8xz5clp80v6xh"; depends=[Category ggplot2 GOstats graph RBGL rJava]; };
RDRToolbox = derive { name="RDRToolbox"; version="1.19.0"; sha256="186cj6xri4prv7y9jvspyql8mkqy3aqs2kd6m5fliqicqbfia2z8"; depends=[MASS rgl]; };
@ -399,7 +403,7 @@ RLMM = derive { name="RLMM"; version="1.31.0"; sha256="01plzmxz5dzvvxzx4wxsqhhyp
RMassBank = derive { name="RMassBank"; version="1.11.0"; sha256="1df5kfm4gb5kz1z5sq38wddi4njq3y8nzy7fr2dxk1z2j4b1977z"; depends=[mzR rcdk Rcpp RCurl rjson XML yaml]; };
RNASeqPower = derive { name="RNASeqPower"; version="1.9.0"; sha256="0nn5wq81cm81wjwc43ky597fyq1l4ya36k64bp6k80ri94qx2vzg"; depends=[]; };
RNAinteract = derive { name="RNAinteract"; version="1.17.0"; sha256="03rz6xyy9f48ns0r9xcxrghikxlna8cx62rwswq2i1xkh7c5lfiy"; depends=[abind Biobase cellHTS2 geneplotter gplots hwriter ICS ICSNP lattice latticeExtra limma locfit RColorBrewer splots]; };
RNAither = derive { name="RNAither"; version="2.17.0"; sha256="028qf3sj2cms9h6wh4bynxaky8mvlr0axci8yw9bjp4bdlrjland"; depends=[biomaRt car geneplotter limma prada RankProd splots topGO]; };
RNAither = derive { name="RNAither"; version="2.17.2"; sha256="01h9l5inafhzpych76rpkrml442ld6jaxrd31ambspn9hsv8js6z"; depends=[biomaRt car geneplotter limma prada RankProd splots topGO]; };
RNAprobR = derive { name="RNAprobR"; version="1.1.1"; sha256="1n0ra0jb6y01nbdx9qbmkh5w4zy381nzkwcawvdg2bfzva1734mp"; depends=[BiocGenerics Biostrings GenomicFeatures GenomicRanges plyr Rsamtools rtracklayer]; };
ROC = derive { name="ROC"; version="1.45.0"; sha256="1vcv5q7ylr2b1fb4vmrc8j4j7s3v5szzpkwblnfkcp2y8d03i9a1"; depends=[]; };
ROntoTools = derive { name="ROntoTools"; version="1.9.0"; sha256="07l9j4d26hn8d5ma3z19ipy4rrw29k66zb2ib8n3ba24pjm0h8w3"; depends=[boot graph KEGGgraph KEGGREST Rgraphviz]; };
@ -416,7 +420,7 @@ RUVnormalize = derive { name="RUVnormalize"; version="1.3.0"; sha256="1fqk68rpzn
RWebServices = derive { name="RWebServices"; version="1.33.1"; sha256="1bxp4zj7r1lrxb7r7l32h6b8hdxb1ryf7dxxj0qhwimh7pmxln31"; depends=[RCurl SJava TypeInfo]; };
RamiGO = derive { name="RamiGO"; version="1.15.0"; sha256="1q9f2ii5b1xway407gzfpzz6vm6an8p13vmgkw7vb9rldxn85hab"; depends=[graph gsubfn igraph png RCurl RCytoscape]; };
RankProd = derive { name="RankProd"; version="2.41.0"; sha256="05r8mrgnpfkd7yhcch7nrn9jbapfhvi67h0z9a9nlxlp44mz0qq7"; depends=[]; };
RareVariantVis = derive { name="RareVariantVis"; version="1.0.0"; sha256="09hww69169c225dmi3rmjhv5j2bxq1c773s1q7048rysgv0har5y"; depends=[BiocGenerics GenomeInfoDb GenomicRanges googleVis IRanges S4Vectors SummarizedExperiment VariantAnnotation]; };
RareVariantVis = derive { name="RareVariantVis"; version="1.0.3"; sha256="1wc2rb80xvwbnsc93fl04cf6y74qpwhhi4172whxb6affq2682cq"; depends=[BiocGenerics GenomeInfoDb GenomicRanges googleVis IRanges S4Vectors VariantAnnotation]; };
Rariant = derive { name="Rariant"; version="1.5.0"; sha256="1xwy2xrdk1m1mscnql8cp3az1jx639a9w4mb8bz7jf62z4z4npsi"; depends=[dplyr exomeCopy GenomeInfoDb GenomicRanges ggbio ggplot2 IRanges reshape2 Rsamtools S4Vectors shiny SomaticSignatures VariantAnnotation VGAM]; };
RbcBook1 = derive { name="RbcBook1"; version="1.37.0"; sha256="03q82zjd725w585rgdn9mbx7ddsv1kdxylsndh26csz573j2myhh"; depends=[Biobase graph rpart]; };
Rbowtie = derive { name="Rbowtie"; version="1.9.0"; sha256="02wc0pzw9vm1mc7y84ic79jjdi1mh77v8h4gk2pl117pdkgg7nl7"; depends=[]; };
@ -436,27 +440,27 @@ ReportingTools = derive { name="ReportingTools"; version="2.9.1"; sha256="05p005
Rgraphviz = derive { name="Rgraphviz"; version="2.13.0"; sha256="08apr3v2h5jwah96c2596ggz7xaz41k5zywcqsjm6g8xhd3hs522"; depends=[graph]; };
Rhtslib = derive { name="Rhtslib"; version="1.1.8"; sha256="1n6mimlkyaxcfwfr4hclmch3h14qaffakkd899p9fwlf1d60j9xw"; depends=[zlibbioc]; };
Ringo = derive { name="Ringo"; version="1.33.0"; sha256="12qh3aayy317pzb137ds9vqrrwn93c4l4fdcl6yyp8p4fqpki03j"; depends=[Biobase BiocGenerics genefilter lattice limma Matrix RColorBrewer vsn]; };
Risa = derive { name="Risa"; version="1.11.0"; sha256="1rgyh3yv4ii0xw6ycm0g9b0y6c9nqdq4k8lidmifk0gx835lw7vf"; depends=[affy Biobase biocViews Rcpp xcms]; };
Risa = derive { name="Risa"; version="1.11.1"; sha256="1bx7n7fjsaig5zq6xgwva2fvy0dlg9f1niwl9m6bi1h04spybp2c"; depends=[affy Biobase biocViews Rcpp xcms]; };
Rmagpie = derive { name="Rmagpie"; version="1.25.0"; sha256="13mb9aaqmwx1ad4mk0fhxqfql8pjpyaiibip7jawiyji7ghp9iw7"; depends=[Biobase e1071 kernlab pamr]; };
RmiR = derive { name="RmiR"; version="1.25.0"; sha256="1xc19w8la239ia793qpnpx2h0aavwhidrjf4i87jry2j29npjfzz"; depends=[DBI RSVGTipsDevice]; };
RnBeads = derive { name="RnBeads"; version="1.1.3"; sha256="1yd5gmi2vvkqrv384ndsn7qgp8rzjj6d0i4zsgr33avxnah757m2"; depends=[BiocGenerics cluster ff fields GenomicRanges ggplot2 gplots gridExtra illuminaio IRanges limma MASS matrixStats methylumi plyr RColorBrewer]; };
RnBeads = derive { name="RnBeads"; version="1.1.4"; sha256="1v4cgfrarybansrxk2r77g79xkwhkh28qaffk93mfwf163rq3391"; depends=[BiocGenerics cluster ff fields GenomicRanges ggplot2 gplots gridExtra illuminaio IRanges limma MASS matrixStats methylumi plyr RColorBrewer]; };
RnaSeqSampleSize = derive { name="RnaSeqSampleSize"; version="1.1.0"; sha256="0q2w1yd5p9k3pls6ki8yci3r2v4rxi3iy4zk5mafmr7ip0q1rwpp"; depends=[biomaRt edgeR heatmap3 KEGGREST matlab Rcpp]; };
Rnits = derive { name="Rnits"; version="1.3.0"; sha256="0hxll8hlv5nc6vijznhzmvbjh1hxmfy9shm2g8al291yi0gfdmk3"; depends=[affy Biobase boot ggplot2 impute limma qvalue reshape2]; };
Roleswitch = derive { name="Roleswitch"; version="1.7.0"; sha256="01b21yyg0d2v10abcbw08zhswh9nb7wj7s3x5kcaaas7671f06ha"; depends=[Biobase biomaRt Biostrings DBI microRNA plotrix pracma reshape]; };
Rolexa = derive { name="Rolexa"; version="1.25.0"; sha256="1qrf7byimw9s5jp15zmwqk95x34r3yx2npr46gwf1zih06n7kc05"; depends=[Biostrings IRanges mclust ShortRead]; };
RpsiXML = derive { name="RpsiXML"; version="2.11.0"; sha256="0rvma7vynfh5sjhqnbpagilq54dh0wrvvb3jzykwmrak0dbyk7zh"; depends=[annotate AnnotationDbi Biobase graph hypergraph RBGL XML]; };
Rqc = derive { name="Rqc"; version="1.3.1"; sha256="02kc0ki021m4hxhzlmxfrb9p7p2ibdqan5hr9h67vd2dcnp9yaij"; depends=[BiocGenerics BiocParallel BiocStyle Biostrings ggplot2 IRanges knitr markdown plyr reshape2 S4Vectors ShortRead]; };
Rsamtools = derive { name="Rsamtools"; version="1.21.13"; sha256="0fv0a5f1jb8mj3b2qn6bf9vzzpvn8fgrlhxz492rd3ndvvgnabxc"; depends=[BiocGenerics BiocParallel Biostrings bitops GenomeInfoDb GenomicRanges IRanges S4Vectors XVector zlibbioc]; };
Rsamtools = derive { name="Rsamtools"; version="1.21.14"; sha256="1s2xwz0njbml9x0yw08kk8ykbr5zgzfy5glhzkdhcdfdz7m19ma9"; depends=[BiocGenerics BiocParallel Biostrings bitops GenomeInfoDb GenomicRanges IRanges S4Vectors XVector zlibbioc]; };
Rsubread = derive { name="Rsubread"; version="1.19.2"; sha256="1xcj13mzw7a8q93kimr61kcl2xvr0mdzvrrqi4j3psbcyf5zn86k"; depends=[]; };
Rtreemix = derive { name="Rtreemix"; version="1.31.0"; sha256="1z08y8qhc3sv4pwvji4pks46hxpcpwb9yx8y0927bc96a8mqgax4"; depends=[Biobase graph Hmisc]; };
S4Vectors = derive { name="S4Vectors"; version="0.7.10"; sha256="15hyi728raya0x0fl0pp58kk6w4chvx7xv2f7kmp1432pkgvif9p"; depends=[BiocGenerics]; };
SAGx = derive { name="SAGx"; version="1.43.0"; sha256="111pgl7rzmscgadkbivwa736gpyw1z7zkcj648zq3jhqix569dvd"; depends=[Biobase multtest]; };
SANTA = derive { name="SANTA"; version="2.5.2"; sha256="0y49ly3ll8qhbnd5yv5nfzc0bq2xcp2nwdg26338qmif4xklzs43"; depends=[igraph Matrix snow]; };
SANTA = derive { name="SANTA"; version="2.6.0"; sha256="0zx9azk7j82bzq424rf42nsaw05qyfgzdsy38h6r352mfbmip2dl"; depends=[igraph Matrix snow]; };
SBMLR = derive { name="SBMLR"; version="1.65.0"; sha256="1nmw5c32ka6l12cid54mc4diahjhmyg6fngsd646v70rbzgffn7q"; depends=[deSolve XML]; };
SCAN_UPC = derive { name="SCAN.UPC"; version="2.11.0"; sha256="1gwjd78qfaqv6xh4ys6rr29b82wc8qxk7ysfjcl06j6n0qk1v4s6"; depends=[affy affyio Biobase Biostrings foreach GEOquery IRanges MASS oligo sva]; };
SELEX = derive { name="SELEX"; version="1.1.0"; sha256="13v2aqphpblwslbnm9yk9lfg31vrc3lz9ds4m8j7584iszmlgnar"; depends=[Biostrings rJava]; };
SEPA = derive { name="SEPA"; version="0.99.0"; sha256="1mc44amd39x1dvl0kamhbsn2cplg7h5j5v5y2lv1gminfl4xs0sw"; depends=[ggplot2 reshape2 segmented shiny topGO]; };
SGSeq = derive { name="SGSeq"; version="1.3.12"; sha256="19i39vv0ds79hgjjkp37j49apr1jr5n93zc2dmn1llglyp9qqwyl"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges igraph IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; };
SGSeq = derive { name="SGSeq"; version="1.3.14"; sha256="0m4dsjyww001bqm3ra01jajl0ys9kx605kjb3fjl4dk6adfkn8h8"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges igraph IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; };
SIM = derive { name="SIM"; version="1.39.0"; sha256="1r08h5hkciycv4lh998vm742flim07plysgjvrq9dp4c5q4qrzr5"; depends=[globaltest quantreg quantsmooth]; };
SIMAT = derive { name="SIMAT"; version="1.1.5"; sha256="074r9fyrgkay1xr0i3ps1sn7n24y26w595nssy7bryrvhhd8izbr"; depends=[ggplot2 mzR Rcpp reshape2]; };
SJava = derive { name="SJava"; version="0.95.1"; sha256="1cl0qybi71srf1ggawxdy128kz8crn8if4yi8c2m6w9ppah9m763"; depends=[]; };
@ -464,7 +468,7 @@ SLGI = derive { name="SLGI"; version="1.29.0"; sha256="0jhi3nmgnqf8qix90kpz8gqib
SLqPCR = derive { name="SLqPCR"; version="1.35.0"; sha256="1p35xgwf3i8ksznz1gi3bddj0816hdljamcb7smdrq0md5fqmpzb"; depends=[]; };
SMAP = derive { name="SMAP"; version="1.33.0"; sha256="0znl289fclws2vnqgpjnrl8b0s5q4cna3ps3il5783vr64ir88cg"; depends=[]; };
SNAGEE = derive { name="SNAGEE"; version="1.9.0"; sha256="0sn5b8ah9idbz63y1rjx8brz3h58zvh2sk59l4i48nvrm38g169r"; depends=[]; };
SNPRelate = derive { name="SNPRelate"; version="1.3.5"; sha256="0xr839g6a2m5p7fd2dzaz0c263b2cfdpakq5ydk0k1c3xppzly9y"; depends=[gdsfmt]; };
SNPRelate = derive { name="SNPRelate"; version="1.3.7"; sha256="04bgql78gwrprj445hkrmrl94ba2dxih48xgbyxhp4ifx5v97cyi"; depends=[gdsfmt]; };
SNPchip = derive { name="SNPchip"; version="2.15.2"; sha256="1px5ifdsly1z8iwd22vj2xb4pk5jhsa3h2z31scw37b0v4daks50"; depends=[Biobase foreach GenomeInfoDb GenomicRanges IRanges lattice oligoClasses SummarizedExperiment]; };
SPEM = derive { name="SPEM"; version="1.9.0"; sha256="09klaxlz1ff77jhjsr95g3s4b5m285zf3fl9w4mv5pc8r1viqplf"; depends=[Biobase Rsolnp]; };
SPIA = derive { name="SPIA"; version="2.21.0"; sha256="0v8m9wfl2kqzzl3k0v7lr7g33ymdnmqi9r2fqyb42mggpq5pwxlm"; depends=[KEGGgraph]; };
@ -478,7 +482,7 @@ SVM2CRM = derive { name="SVM2CRM"; version="1.1.0"; sha256="0k3mg9b8i406ssvkzacz
SamSPECTRAL = derive { name="SamSPECTRAL"; version="1.23.4"; sha256="0fqnqffw6q5sja3jkw6ddrachs075s5s7rnpg9fli9lgax5r4rbp"; depends=[]; };
ScISI = derive { name="ScISI"; version="1.41.0"; sha256="05snqj8qphcmnkrmv42p6zs92dmi09sd06abn5ll5234my5d0vvn"; depends=[annotate AnnotationDbi apComplex RpsiXML]; };
SemDist = derive { name="SemDist"; version="1.3.0"; sha256="0dvnp3d2s7bc4jv2vm8jikyac2cd23hx7r480g2lkcaic99wbl0s"; depends=[annotate AnnotationDbi]; };
SeqArray = derive { name="SeqArray"; version="1.9.7"; sha256="0gpn5dispfd8scqhgxw8pfgrwkz479ly5q8431mifmbkq8zh34pd"; depends=[Biostrings gdsfmt GenomicRanges IRanges S4Vectors VariantAnnotation]; };
SeqArray = derive { name="SeqArray"; version="1.9.9"; sha256="0nlzwr6v1az5apm5lipzxdjdfswjyb8kfasjrg4ndddxwmmr2ads"; depends=[Biostrings gdsfmt GenomicRanges IRanges S4Vectors VariantAnnotation]; };
SeqGSEA = derive { name="SeqGSEA"; version="1.9.0"; sha256="0znabm84qgzf9m4dk64jppn3s5vzz1sjvrdlr7s6jls8jwi8kqqi"; depends=[Biobase biomaRt DESeq doParallel]; };
SeqVarTools = derive { name="SeqVarTools"; version="1.7.1"; sha256="04xfph2iphpmlqws5xmibq1jdkclbal2nrf18w7sblqcv67cff7x"; depends=[gdsfmt GenomicRanges GWASExactHW IRanges S4Vectors SeqArray VariantAnnotation]; };
ShortRead = derive { name="ShortRead"; version="1.27.5"; sha256="0r9gmbg9fd3n6v8c0l1mjkk9x1v6qrisamm5a1nasqbg3wmhmz5k"; depends=[Biobase BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges hwriter IRanges lattice latticeExtra Rsamtools S4Vectors XVector zlibbioc]; };
@ -486,7 +490,7 @@ SigCheck = derive { name="SigCheck"; version="2.1.0"; sha256="012n75gmsifvymbk20
SigFuge = derive { name="SigFuge"; version="1.7.0"; sha256="1b966n3rl4xs3q1vjgkxxfravqr02rdgwyzvr469y757qdqi1day"; depends=[GenomicRanges ggplot2 matlab reshape sigclust]; };
SimBindProfiles = derive { name="SimBindProfiles"; version="1.7.0"; sha256="04m7h5zil05sg9yfgjjzm1p65302fp50vxf8y1jafp1nwqialxwh"; depends=[Biobase limma mclust Ringo]; };
SomatiCA = derive { name="SomatiCA"; version="1.13.0"; sha256="06b3mz199qm2ynal8iq4kp8rv40wbc5zipzwm22nccf97krxl9a4"; depends=[DNAcopy doParallel foreach GenomicRanges IRanges lars rebmix sn]; };
SomaticSignatures = derive { name="SomaticSignatures"; version="2.5.4"; sha256="1kr4z1b9b5a8gb1m9vfk9bxhinh5ccba2mrwnq3cqhb7c3slbjs3"; depends=[Biobase Biostrings GenomeInfoDb GenomicRanges ggbio ggplot2 IRanges NMF pcaMethods proxy reshape2 S4Vectors VariantAnnotation]; };
SomaticSignatures = derive { name="SomaticSignatures"; version="2.5.5"; sha256="17a74vmnxrznq7y6fafrwlc6kdrs2qf56ikgacsmp6rm7cx7fi36"; depends=[Biobase Biostrings GenomeInfoDb GenomicRanges ggbio ggplot2 IRanges NMF pcaMethods proxy reshape2 S4Vectors VariantAnnotation]; };
SpacePAC = derive { name="SpacePAC"; version="1.7.0"; sha256="1ay5hlbm2x9g5mjrq5qksgrrr84vwfk49g9qb2sc9wyc46n5af6k"; depends=[iPAC]; };
SpeCond = derive { name="SpeCond"; version="1.23.0"; sha256="0nbbqazxql9mc5idvrcycrm9fkrnm2vi9zrad3awhc378ippdk8k"; depends=[Biobase fields hwriter mclust RColorBrewer]; };
SplicingGraphs = derive { name="SplicingGraphs"; version="1.9.1"; sha256="1s3kvaxrrvfndp4imavj0r9zw0rg37cn9xwxhi5zpfd7a784z1xk"; depends=[BiocGenerics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph igraph IRanges Rgraphviz Rsamtools S4Vectors]; };
@ -495,17 +499,18 @@ Streamer = derive { name="Streamer"; version="1.15.2"; sha256="0mah1sq797ihy82mv
SummarizedExperiment = derive { name="SummarizedExperiment"; version="0.3.2"; sha256="0k7dmly8g1qhpqx4qv376ixkwvx073ydc5xqi29s81mwp5fq08zi"; depends=[Biobase BiocGenerics GenomeInfoDb GenomicRanges IRanges S4Vectors]; };
Sushi = derive { name="Sushi"; version="1.6.1"; sha256="0g1fk0xrn584l49r73crj0bc5z2y6rdzyf54d221r7k119njp3dw"; depends=[biomaRt zoo]; };
SwimR = derive { name="SwimR"; version="1.7.0"; sha256="07kh24m9d1q3swj3srjybj6lq68s89750fbvlg449px4aq23yrq0"; depends=[gplots heatmap_plus R2HTML signal]; };
TCC = derive { name="TCC"; version="1.9.0"; sha256="1bihqfvrq3sjs38m2a60swxqcxmgabb1lmsnfrb669imiqc7ramj"; depends=[baySeq DESeq DESeq2 edgeR ROC samr]; };
TCC = derive { name="TCC"; version="1.9.2"; sha256="1srlaiavii6sr0d3fiqngp1rchdfxgnmsf7h29szyy34aajqygbw"; depends=[baySeq DESeq DESeq2 edgeR ROC samr]; };
TDARACNE = derive { name="TDARACNE"; version="1.19.0"; sha256="0nwg355n0qs781801pmmwfwp66sa2ci7g6gfdh4669067j4qbqhb"; depends=[Biobase GenKern Rgraphviz]; };
TEQC = derive { name="TEQC"; version="3.9.0"; sha256="0dkmh901jkf529jcshvr79jmkvw0824r4dxgp6l6vgv9j5c6nf25"; depends=[Biobase BiocGenerics hwriter IRanges Rsamtools]; };
TFBSTools = derive { name="TFBSTools"; version="1.7.0"; sha256="1c38n6xlm4cfrhh9qih0d8xh3d7r7w797fjcbmhsr2zhd7qssrqb"; depends=[BiocParallel Biostrings BSgenome caTools CNEr DirichletMultinomial GenomicRanges gtools IRanges RSQLite rtracklayer S4Vectors seqLogo TFMPvalue XVector]; };
TIN = derive { name="TIN"; version="1.1.0"; sha256="0npf3gwh2izvsa5j0zjy1gkm69nrxhcjlm2ha621fc1gz7lx1i2y"; depends=[aroma_affymetrix data_table impute squash stringr WGCNA]; };
TPP = derive { name="TPP"; version="1.1.0"; sha256="06xm73jx4f2pldi7yifvx7zh62zmigidnfd7klpp0jpfxx3xjw61"; depends=[Biobase doParallel foreach ggplot2 gridExtra nls2 openxlsx plyr reshape2 VennDiagram VGAM]; };
TPP = derive { name="TPP"; version="1.1.3"; sha256="152dpyn6ldw4b3ys0b1ylriq0l1hr9l0qjgfh19bvs2gflhbzyah"; depends=[Biobase doParallel foreach ggplot2 gridExtra nls2 openxlsx plyr reshape2 VennDiagram VGAM]; };
TRONCO = derive { name="TRONCO"; version="1.1.0"; sha256="18zmn1cxysar3a19n9i47r2gda5r5jvz0bk209wh6kqlhs001q9v"; depends=[graph lattice Rgraphviz]; };
TSCAN = derive { name="TSCAN"; version="1.5.0"; sha256="1hkmfn9svbgpvxpszfdxjc23qq8x60prsbrgv7z5n3na4sl7y5z5"; depends=[combinat fastICA ggplot2 gplots igraph mclust mgcv plyr shiny]; };
TSSi = derive { name="TSSi"; version="1.15.0"; sha256="0475zw1s34ayiz0v9i770rmha4rx9i3zzkjvyskgvsdpgsq9wl4j"; depends=[Biobase BiocGenerics Hmisc IRanges minqa plyr S4Vectors]; };
TargetScore = derive { name="TargetScore"; version="1.7.0"; sha256="0lkkxzi3fi0dxika09fkbakq54c2sjw4g4y9bafcy3f225fac8x8"; depends=[Matrix pracma]; };
TargetSearch = derive { name="TargetSearch"; version="1.25.0"; sha256="071p06gb1rn6sdhdpi7g05rflp6jgs0cdff13gj8hr5jykyw5ix7"; depends=[mzR]; };
TimerQuant = derive { name="TimerQuant"; version="0.99.3"; sha256="03qa5k4xc8pv677azdc0ar66p23jdyqyblckdnrqlwnscln0y77g"; depends=[deSolve dplyr ggplot2 gridExtra locfit shiny]; };
TitanCNA = derive { name="TitanCNA"; version="1.7.1"; sha256="0a64bqgyn18qdvgzmc6kqr6c16jlqyz0vah0fm2qwdjz3zmjd081"; depends=[foreach GenomeInfoDb IRanges Rsamtools]; };
ToPASeq = derive { name="ToPASeq"; version="1.3.0"; sha256="1m6mh30fpf9mmgg2wsv08qvizw0cpa6dz5abspgbw3q0vaskm2db"; depends=[Biobase clipper DESeq DESeq2 edgeR fields GenomicRanges graph graphite gRbase KEGGgraph limma locfit qpgraph R_utils RBGL Rcpp Rgraphviz TeachingDemos]; };
TransView = derive { name="TransView"; version="1.13.0"; sha256="14fanxl8lqam3492c5sbvhsjwbayrx7dcp5wpsbqrcvbssmfa3cx"; depends=[GenomicRanges gplots IRanges Rsamtools zlibbioc]; };
@ -514,8 +519,8 @@ TypeInfo = derive { name="TypeInfo"; version="1.35.0"; sha256="0rxwfaqg8sg70hiq8
UNDO = derive { name="UNDO"; version="1.11.0"; sha256="173cdpp0gipwplxdf7ynxqnv8fqfkbyx7xmr5cx396zi8gpq3am4"; depends=[Biobase BiocGenerics boot MASS nnls]; };
UniProt_ws = derive { name="UniProt.ws"; version="2.9.2"; sha256="0pby1c7y8fxkpdd2knbv8gbxs78ry1dz8q9zqw6bakp831v5kbgw"; depends=[AnnotationDbi BiocGenerics RCurl RSQLite]; };
VanillaICE = derive { name="VanillaICE"; version="1.31.3"; sha256="0niimjngjx8wq2fylzjdijb2za4w4ia53aqkdnjwjfl78rg2hwch"; depends=[Biobase BiocGenerics crlmm data_table foreach GenomeInfoDb GenomicRanges IRanges lattice matrixStats oligoClasses S4Vectors SummarizedExperiment]; };
VariantAnnotation = derive { name="VariantAnnotation"; version="1.15.19"; sha256="1hqpjwrnyl5hp8vwl68v2cnf868vjf7k0vckjczdcc66wp3g9r70"; depends=[AnnotationDbi Biobase BiocGenerics Biostrings BSgenome DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment XVector zlibbioc]; };
VariantFiltering = derive { name="VariantFiltering"; version="1.5.15"; sha256="1dawzsv358h3p5x7kcml17snpbypgwjl5b0aam2wrsb7qp80sqh7"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings BSgenome DBI GenomeInfoDb GenomicFeatures GenomicRanges graph Gviz IRanges RBGL Rsamtools RSQLite S4Vectors shiny VariantAnnotation XVector]; };
VariantAnnotation = derive { name="VariantAnnotation"; version="1.15.21"; sha256="0b5i9q2xnclkrziri6575irmm5y3r2g9x45dr5qnq91g9rxi4m7v"; depends=[AnnotationDbi Biobase BiocGenerics Biostrings BSgenome DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment XVector zlibbioc]; };
VariantFiltering = derive { name="VariantFiltering"; version="1.5.16"; sha256="1fvzhxvirzxcrqw3bm86f5id29s993gpmbwjar5maj86881l1c2f"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings BSgenome DBI GenomeInfoDb GenomicFeatures GenomicRanges graph Gviz IRanges RBGL Rsamtools RSQLite S4Vectors shiny VariantAnnotation XVector]; };
VariantTools = derive { name="VariantTools"; version="1.11.0"; sha256="1yyx9l6q3v4igm2ppnrsj9c7p4p0zpkqwjyf9d7b7rqvrk9yjyrv"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicFeatures GenomicRanges gmapR IRanges Matrix Rsamtools rtracklayer S4Vectors VariantAnnotation]; };
Vega = derive { name="Vega"; version="1.17.0"; sha256="1c39112czlw9hgh9gmkwxhhz9kwki48k8lsfmy3hkzxqpxx61h01"; depends=[]; };
VegaMC = derive { name="VegaMC"; version="3.7.0"; sha256="046wly5sn4vwk3h4bcick8q5dpjrfjq393rqjl8y4v24iqynlyqd"; depends=[Biobase biomaRt genoset]; };
@ -540,8 +545,8 @@ affyPara = derive { name="affyPara"; version="1.29.0"; sha256="06382vyfjrng72hhm
affyQCReport = derive { name="affyQCReport"; version="1.47.0"; sha256="09f3pbacsrjs5bv1bv3dz7jmd849rnix6pqlkszr507s6by5i47y"; depends=[affy affyPLM Biobase genefilter lattice RColorBrewer simpleaffy xtable]; };
affycomp = derive { name="affycomp"; version="1.45.0"; sha256="0wwgijr7h2hbv2l0w5p509f70yy873w8kahs7nnhrgl4kzbjiymc"; depends=[Biobase]; };
affycoretools = derive { name="affycoretools"; version="1.41.9"; sha256="16zdm1idmssg9jp86kkfc2h2dhjz2rl6qnrbybfbkiiklj2gagq7"; depends=[affy AnnotationDbi Biobase gcrma ggplot2 GOstats gplots hwriter lattice limma oligoClasses ReportingTools xtable]; };
affyio = derive { name="affyio"; version="1.37.0"; sha256="0p6wgrl8xag85y5vadfxdvvr430d7sa4wh2fw3ijyi3hr83sdr4z"; depends=[zlibbioc]; };
affylmGUI = derive { name="affylmGUI"; version="1.43.0"; sha256="04np48b2v04w77vhpacdx8790i8jb58rw7da76qvahiqja857vlq"; depends=[affy affyio affyPLM AnnotationDbi BiocInstaller gcrma limma R2HTML tkrplot xtable]; };
affyio = derive { name="affyio"; version="1.38.0"; sha256="0rdkbc01bgkvg4pmpv7nl8ggq3jy17ldll50xqi1yv8rx2z0m0vp"; depends=[zlibbioc]; };
affylmGUI = derive { name="affylmGUI"; version="1.43.2"; sha256="1mkg2addri3x8vchgcdy4wih1pzagbp0i54w3nh9kf64r89m35br"; depends=[affy affyio affyPLM AnnotationDbi BiocInstaller gcrma limma R2HTML tkrplot xtable]; };
affypdnn = derive { name="affypdnn"; version="1.43.0"; sha256="01myf9dxzgc2jgdswphinz7ap7bdaqnw0gcfk32sxbykr4g4zyiy"; depends=[affy]; };
agilp = derive { name="agilp"; version="3.1.0"; sha256="13jnq7v0qfyllbldx2abnia0rg40yxxgkq4i1whsy5qnk1fp0n77"; depends=[]; };
alsace = derive { name="alsace"; version="1.5.0"; sha256="17ah7dl02w6qysfbs92h4c3wxfb6f1m6vz6yl07s0zd86k12g4nm"; depends=[ALS ptw]; };
@ -549,7 +554,7 @@ altcdfenvs = derive { name="altcdfenvs"; version="2.31.0"; sha256="05gr6j1w1y289
ampliQueso = derive { name="ampliQueso"; version="1.7.0"; sha256="1bk0svxg7n6b610d5czkk1mgkrgdsjlghbj38g4hxxw3vciaxhkk"; depends=[DESeq doParallel edgeR foreach genefilter ggplot2 gplots knitr rgl rnaSeqMap samr statmod VariantAnnotation xtable]; };
annaffy = derive { name="annaffy"; version="1.41.1"; sha256="1rqp0lrhahkimnhifpipf2vw0lhprdx9slz3s4bwylvn0k5balcm"; depends=[AnnotationDbi Biobase]; };
annmap = derive { name="annmap"; version="1.11.0"; sha256="0s0ifbwra3zczw9h0nqcs88rb3h74ry1gap1bvqvcxqirdwq9nw4"; depends=[Biobase BiocGenerics DBI digest genefilter GenomicRanges IRanges lattice RMySQL Rsamtools]; };
annotate = derive { name="annotate"; version="1.47.0"; sha256="06nrzkl9g26rrnqvakwkn2yinvgka02a5iivhi9kgjk4g5plcmkw"; depends=[AnnotationDbi Biobase BiocGenerics DBI XML xtable]; };
annotate = derive { name="annotate"; version="1.47.4"; sha256="01imryfc18jg8hmxk82arkpvdxfh448fhiv5z0xmkbx03hrrin7b"; depends=[AnnotationDbi Biobase BiocGenerics DBI XML xtable]; };
annotationTools = derive { name="annotationTools"; version="1.43.0"; sha256="1dqs8f4p1ks03q0lfwm3hs116ahks39hk17knkqs492zcqr83qay"; depends=[Biobase]; };
anota = derive { name="anota"; version="1.17.0"; sha256="0grdmpdg03wqjs6rk558nvl8vvdi6my0jv06f3h364pk44hrijdn"; depends=[multtest qvalue]; };
antiProfiles = derive { name="antiProfiles"; version="1.9.1"; sha256="07gzl7wsvv3x7in7n1fwq4cm8bqhlrxwq6ra1k2556z9z8ad7y33"; depends=[locfit matrixStats]; };
@ -567,7 +572,7 @@ beadarraySNP = derive { name="beadarraySNP"; version="1.35.0"; sha256="0g6ba4iyn
betr = derive { name="betr"; version="1.25.0"; sha256="0jd7r069jlfp5fj51xw8k6jpxq5kb364xi9331l06hwijp3msrk6"; depends=[Biobase limma mvtnorm]; };
bgafun = derive { name="bgafun"; version="1.31.0"; sha256="18wk42h1i06j3swlsac9vnkc7riimk7qap59lygji1p3zvy1nkpx"; depends=[ade4 made4 seqinr]; };
bgx = derive { name="bgx"; version="1.35.0"; sha256="1cawfanrxq82b24ny050hv4p607k2zhfxllgl8j1j9qm9n4yk4yk"; depends=[affy Biobase gcrma]; };
bigmemoryExtras = derive { name="bigmemoryExtras"; version="1.13.2"; sha256="0qmrpm4bir0si5xd5v8ih6wnwfprwp4q9hcxbylf1721v9m9wpwv"; depends=[bigmemory Biobase]; };
bigmemoryExtras = derive { name="bigmemoryExtras"; version="1.13.3"; sha256="0jniyz1b11yk00azqxswfdipri84a28ni30kxpazb57d5m6s53h2"; depends=[bigmemory Biobase]; };
bioDist = derive { name="bioDist"; version="1.41.0"; sha256="14a18ky9x36fa8yx3kry23c0vfazxy0lg0j2zkdnr1irngc9wnw5"; depends=[Biobase KernSmooth]; };
bioassayR = derive { name="bioassayR"; version="1.7.7"; sha256="1pflygamq0l0pdps4ay3rl4f8c1njrb55lnl0p2z7mgpj6dbgvf8"; depends=[BiocGenerics DBI Matrix rjson RSQLite XML]; };
biocGraph = derive { name="biocGraph"; version="1.31.0"; sha256="069n4867pkygrsgfjp6arnnmcvlij03r1a2kbs9jgnpx4knck09i"; depends=[BiocGenerics geneplotter graph Rgraphviz]; };
@ -577,13 +582,13 @@ biomvRCNS = derive { name="biomvRCNS"; version="1.9.1"; sha256="0ni7ncip0vx1ipyr
biosvd = derive { name="biosvd"; version="2.5.0"; sha256="0xnc3vpbj5p14w2fwql8vpz9lyvivq3kjmwsr62abn418ampa941"; depends=[Biobase BiocGenerics NMF]; };
biovizBase = derive { name="biovizBase"; version="1.17.1"; sha256="0fffqm8z7x849rd0k7vhpbzwyrx5s0w75iz78627rglczjff6ddp"; depends=[AnnotationDbi BiocGenerics Biostrings dichromat GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Hmisc IRanges RColorBrewer Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; };
birta = derive { name="birta"; version="1.13.0"; sha256="01lrwg4naks85gcrlg3sk3pr328j40b1ji4m4bn3s74rqn6sb52h"; depends=[Biobase limma MASS]; };
birte = derive { name="birte"; version="1.3.0"; sha256="0azkl9x2hk826sdpw96ls868jf83yf1v79inyjg7xsilal2slqgf"; depends=[Biobase limma MASS nem Rcpp RcppArmadillo ridge]; };
birte = derive { name="birte"; version="1.4.0"; sha256="0fyz2chcgcp98lk6zj21lsixmkr06hd80dbg2j25a4rx2pv6qn5s"; depends=[Biobase limma MASS nem Rcpp RcppArmadillo ridge]; };
blima = derive { name="blima"; version="1.3.0"; sha256="1i7njg1lw76717irmfbpy9pmv8hy7nzyini2wm6625cafizp5xq8"; depends=[beadarray Biobase BiocGenerics]; };
bridge = derive { name="bridge"; version="1.33.0"; sha256="06iz67amv80az14s8yim25jfsgbxhxbfifbqazsc78ip9gd7lfyv"; depends=[rama]; };
bsseq = derive { name="bsseq"; version="1.5.4"; sha256="1hr9h4h099506id4xvh6xm9x40dv5hsiyz8rzj4dxxkq7095h9d1"; depends=[Biobase BiocGenerics data_table GenomeInfoDb GenomicRanges gtools IRanges locfit matrixStats S4Vectors scales SummarizedExperiment]; };
bumphunter = derive { name="bumphunter"; version="1.9.1"; sha256="0phq9dhrj8fa253a64vwfp75j85vp9142g5gmfy1g1n861xy8r26"; depends=[AnnotationDbi BiocGenerics doRNG foreach GenomeInfoDb GenomicFeatures GenomicRanges IRanges iterators limma locfit matrixStats S4Vectors]; };
caOmicsV = derive { name="caOmicsV"; version="0.99.2"; sha256="0y96f64m0liv53vbby866v1ga5nml1506pp6ff4ax7dbg0niiwwn"; depends=[bc3net igraph]; };
canceR = derive { name="canceR"; version="1.1.2"; sha256="07wikalgmf3vw2dzmri1ia80hfman53mynsk40y549qn8hjija1k"; depends=[Biobase cgdsr circlize Formula geNetClassifier GSEABase GSEAlm phenoTest plyr rpart RUnit survival tcltk2 tkrplot]; };
canceR = derive { name="canceR"; version="1.1.3"; sha256="1cagv58133w80acjzlyvx2752ap4dhkpvsfr34306gwbvs4gin3j"; depends=[Biobase cgdsr circlize Formula geNetClassifier GSEABase GSEAlm phenoTest plyr rpart RUnit survival tcltk2 tkrplot]; };
cancerclass = derive { name="cancerclass"; version="1.13.0"; sha256="066v9dz49ap0db31jrdlx2zbv8l3bwd75sf9gqa1dw3g8m9zq7hg"; depends=[binom Biobase]; };
casper = derive { name="casper"; version="2.3.1"; sha256="12nz9ypg685c1bly3fp9x76cilh6imlw4hqdmd7sbp2d0z89dcgf"; depends=[Biobase BiocGenerics EBarrays gaga GenomeInfoDb GenomicFeatures GenomicRanges gtools IRanges limma mgcv Rsamtools rtracklayer S4Vectors sqldf survival VGAM]; };
categoryCompare = derive { name="categoryCompare"; version="1.13.0"; sha256="08r5payxn40xdpaph6zind8miqlqdhnmka9jcijj396rbbhvb480"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category colorspace GOstats graph GSEABase hwriter RCytoscape]; };
@ -603,21 +608,21 @@ cisPath = derive { name="cisPath"; version="1.9.0"; sha256="1jdq159ixiixh9ppfc5g
cleanUpdTSeq = derive { name="cleanUpdTSeq"; version="1.7.1"; sha256="0inszzss1fqyhw18lx40iycvpzkm18djxmad1li8bd22hss759c2"; depends=[BiocGenerics BSgenome e1071 GenomicRanges seqinr]; };
cleaver = derive { name="cleaver"; version="1.7.0"; sha256="14vbdagy61imql6z2qazzlqzp0r9ridydn7phvajc84lnwbf8xa3"; depends=[Biostrings IRanges]; };
clippda = derive { name="clippda"; version="1.19.0"; sha256="1gd5b2n2qa9bv1n93vcdz8lg8kmn1lv923i3gzq8pcy7fbz7m5cs"; depends=[Biobase lattice limma rgl scatterplot3d statmod]; };
clipper = derive { name="clipper"; version="1.9.0"; sha256="0py5hdbf8wypw5r9r2d7b3239b83lyrybcvksrmiklv7snw9c2qx"; depends=[Biobase corpcor graph gRbase igraph KEGGgraph Matrix qpgraph RBGL Rcpp]; };
clipper = derive { name="clipper"; version="1.9.1"; sha256="1z0wjkzx9v0wlsx2wdjxch7j6m3hlkmg5zy8fddgbv3fdc750ppm"; depends=[Biobase corpcor graph gRbase igraph KEGGgraph Matrix qpgraph RBGL Rcpp]; };
clonotypeR = derive { name="clonotypeR"; version="1.7.0"; sha256="1pwwjgln7r7035fdqqfb69fgql91cxfablbwid2m5xkdrwzpb57s"; depends=[]; };
clst = derive { name="clst"; version="1.17.1"; sha256="08gqxcjchzywvc67nfjmr2i1xxm71i1j00qxdq3zs6p9y4n65qa0"; depends=[lattice ROC]; };
clstutils = derive { name="clstutils"; version="1.17.1"; sha256="04gwj8mlbqd5l2nas146vk0vzad0z1y4225g935h9baspcmdh3f8"; depends=[ape clst lattice rjson RSQLite]; };
clusterProfiler = derive { name="clusterProfiler"; version="2.3.6"; sha256="1hfknmad6wix5ciwcfjn80s0y78966gfkifhxa6wxpkddmdhklqw"; depends=[AnnotationDbi DOSE ggplot2 GOSemSim KEGGREST magrittr plyr qvalue topGO]; };
clusterStab = derive { name="clusterStab"; version="1.41.0"; sha256="0sgj2k70fc3r3s19vxcx95z8s3a42yshl78swxp0qp55kidbhvdp"; depends=[Biobase]; };
cn_farms = derive { name="cn.farms"; version="1.17.0"; sha256="09xasmanimx3mzis786iwy2nvxqa5rzvrvrz1hpsiyh5y77yrbnb"; depends=[affxparser Biobase DBI DNAcopy ff lattice oligo oligoClasses preprocessCore snow]; };
cn_mops = derive { name="cn.mops"; version="1.15.1"; sha256="03gr4i1vpyg6h3yyqrdjq1z1dzq9jzdazcrv9045v652qf4jbshr"; depends=[Biobase BiocGenerics GenomicRanges IRanges Rsamtools]; };
cn_mops = derive { name="cn.mops"; version="1.15.3"; sha256="0swin9qyzi2fcc0frq0xnzmj789vbjj0mi2wnmmy131blp7iy6x9"; depends=[Biobase BiocGenerics GenomicRanges IRanges Rsamtools]; };
cnvGSA = derive { name="cnvGSA"; version="1.13.0"; sha256="1sswh1xwimki8ys08l2h95ajpnm5gr0bscvwilhjw4g2a0y7nibr"; depends=[brglm doParallel foreach GenomicRanges splitstackshape]; };
coGPS = derive { name="coGPS"; version="1.13.0"; sha256="160cf9ijn5crvhwbqldix1n36jrmn51085sr4whgm765si57wwb4"; depends=[]; };
coMET = derive { name="coMET"; version="1.1.0"; sha256="01baf156p0ldqhczrin2lsf4jir7158b0db5732jddnl5ayghsi3"; depends=[biomaRt colortools GenomicRanges ggbio ggplot2 gridExtra Gviz hash IRanges psych rtracklayer S4Vectors trackViewer]; };
coRNAi = derive { name="coRNAi"; version="1.19.0"; sha256="1vidwyq8rnkbi0pfbh3mk8m3qj8acwqn7q6jm35gahy4y3p0nq7x"; depends=[cellHTS2 gplots lattice limma locfit MASS]; };
cobindR = derive { name="cobindR"; version="1.7.1"; sha256="0mya51pynfdxfap3paylinqg10fpir7flsz1bng0sk34y15jnxbz"; depends=[BiocGenerics biomaRt Biostrings BSgenome gmp gplots IRanges mclust rtfbs seqinr yaml]; };
codelink = derive { name="codelink"; version="1.37.4"; sha256="0rn2cbjgb7f9yypdrvk5ahgpghd3pn45pb183rs9fdywivys9a0v"; depends=[annotate Biobase BiocGenerics limma]; };
cogena = derive { name="cogena"; version="1.1.3"; sha256="074knrfvnhf4fp98dypwzjsp9z15lj7xlgm1wfmnijcwrwf5566p"; depends=[amap Biobase biwt class cluster corrplot devtools doParallel dplyr fastcluster foreach ggplot2 gplots igraph kohonen mclust reshape2 STRINGdb]; };
codelink = derive { name="codelink"; version="1.37.5"; sha256="1nh7cfhamy5l8qsxixwl4bg8k524hlr4l8v5mqf4qis9f3zp3l3x"; depends=[annotate Biobase BiocGenerics limma]; };
cogena = derive { name="cogena"; version="1.1.6"; sha256="0sf0513qhqpb8mm2ydchdnv20dj9s510nv4rcs5b89vnwm62j0i0"; depends=[amap Biobase biwt class cluster corrplot devtools doParallel dplyr fastcluster foreach ggplot2 gplots igraph jsonlite kohonen mclust reshape2 STRINGdb]; };
compEpiTools = derive { name="compEpiTools"; version="1.3.4"; sha256="0y12sn2dh0x2y7nghkh6dm98b4ilg41694shw3m0fcgaz22c30kp"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges gplots IRanges methylPipe Rsamtools S4Vectors topGO XVector]; };
compcodeR = derive { name="compcodeR"; version="1.5.3"; sha256="0208sxff40mjizr47zf6yf87irnnjm0gizdk9h5frbizdxl2i9nn"; depends=[caTools edgeR gdata ggplot2 gplots gtools KernSmooth knitr lattice limma markdown MASS modeest ROCR sm stringr vioplot]; };
conumee = derive { name="conumee"; version="1.1.0"; sha256="1sxl5m7yfqbzg76n06y1jcv0v75y7wf3ad66zw8v004nz84diaix"; depends=[DNAcopy GenomeInfoDb GenomicRanges IRanges minfi rtracklayer]; };
@ -645,30 +650,30 @@ derfinderHelper = derive { name="derfinderHelper"; version="1.3.1"; sha256="03ki
derfinderPlot = derive { name="derfinderPlot"; version="1.3.4"; sha256="1f7x609sknmbn8gsxq75073vfr0qd0k9j7gfi0fxvgnm5f4lkizx"; depends=[derfinder GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 IRanges limma plyr RColorBrewer reshape2 scales]; };
dexus = derive { name="dexus"; version="1.9.0"; sha256="1xnjs6gmzkdj1snwakq73bz8ypnxzzxh8ki9wv0ljfbfwv1j7z53"; depends=[BiocGenerics]; };
diffGeneAnalysis = derive { name="diffGeneAnalysis"; version="1.51.0"; sha256="1k5as63cd87nnigc0yzaxvhskpnbr7l1ym2bqc57zsm3bwh8xxwb"; depends=[minpack_lm]; };
diffHic = derive { name="diffHic"; version="1.1.9"; sha256="0azagkb87v2lxmb5bvjqc9bz8pqnn1a9j3p5r4v8izpqwq23hf75"; depends=[BiocGenerics Biostrings BSgenome csaw edgeR GenomeInfoDb GenomicRanges IRanges limma locfit rhdf5 Rsamtools S4Vectors]; };
diffHic = derive { name="diffHic"; version="1.1.11"; sha256="1xc8kw489l4i4dkrsx7hihsg9cqw85y6cr956adf6mlgmgm05n16"; depends=[BiocGenerics Biostrings BSgenome csaw edgeR GenomeInfoDb GenomicRanges IRanges limma locfit rhdf5 Rsamtools S4Vectors]; };
diggit = derive { name="diggit"; version="1.1.1"; sha256="0c3zy1d9bzb6asa4clgq738h7dj6md55gclwa244qyx857b58rqv"; depends=[Biobase ks viper]; };
dks = derive { name="dks"; version="1.15.0"; sha256="1d66jfca6q8ni5vz5zh7fmxwh3y0yvl2p7gal7w55py6wvyssnl3"; depends=[cubature]; };
domainsignatures = derive { name="domainsignatures"; version="1.29.0"; sha256="1wkypbm5ldwx8y2n16fajf450pwv6zipjdk0176a5rqihaflz80l"; depends=[AnnotationDbi biomaRt prada]; };
dualKS = derive { name="dualKS"; version="1.29.0"; sha256="1a2wb137x98nmdm8dvnl4msl89mlyvm8f1kqzr6jhdj4wjv2hrg1"; depends=[affy Biobase]; };
dyebias = derive { name="dyebias"; version="1.27.0"; sha256="095qcnri2g19m363ipdi31xgn20b51mbfv5mgkk21m6fww1npc92"; depends=[Biobase marray]; };
easyRNASeq = derive { name="easyRNASeq"; version="2.5.5"; sha256="0g2n3ayl06bn8khf5pail119i1611nq71vvqfkdh0v30nj9rsbw2"; depends=[Biobase BiocGenerics BiocParallel biomaRt Biostrings DESeq edgeR GenomeInfoDb genomeIntervals GenomicAlignments GenomicRanges IRanges locfit LSD Rsamtools S4Vectors ShortRead SummarizedExperiment]; };
easyRNASeq = derive { name="easyRNASeq"; version="2.5.6"; sha256="0b93i80fjvljjm4il1ad9g3apznj23hcyhpq3z10zsw81clfya1j"; depends=[Biobase BiocGenerics BiocParallel biomaRt Biostrings DESeq edgeR GenomeInfoDb genomeIntervals GenomicAlignments GenomicRanges IRanges locfit LSD Rsamtools S4Vectors ShortRead SummarizedExperiment]; };
ecolitk = derive { name="ecolitk"; version="1.41.0"; sha256="0jga35q98bidqjlqynq0cack4gwsm3hw34vgns67v37krjs4hn9f"; depends=[Biobase]; };
edge = derive { name="edge"; version="2.1.0"; sha256="1xxz8qyagrfr92ldaxlgb8dfpm6nx3lyk6fa4dl0m8yvlr6lw2fa"; depends=[Biobase MASS qvalue snm sva]; };
edgeR = derive { name="edgeR"; version="3.11.2"; sha256="0df181xjga322phjinlffl0j2mg61pq4p8h3sxx3xz100c6xrahr"; depends=[limma]; };
eiR = derive { name="eiR"; version="1.9.1"; sha256="01wkz9lc6gi1a98q02c6zyzfsnkk52px60xg3lawp2419dvj2ww3"; depends=[BH BiocGenerics ChemmineR DBI digest RCurl RUnit snow snowfall]; };
eisa = derive { name="eisa"; version="1.21.0"; sha256="03366q5qj4wdfm4d9lwysmgz3bgwc53zynw2cmsj7w3yg6dj63km"; depends=[AnnotationDbi Biobase BiocGenerics Category DBI genefilter isa2]; };
ensemblVEP = derive { name="ensemblVEP"; version="1.9.2"; sha256="10xjxafm97jnk7dfi0j1ahyd6hp45r5rpfr206fbiipcq3ha2p9h"; depends=[BiocGenerics Biostrings GenomicRanges VariantAnnotation]; };
ensembldb = derive { name="ensembldb"; version="1.1.5"; sha256="1q32pcg07lgzzavcgx5843ljchklgbscw0qgifrs6d1hidbldjvq"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics DBI GenomeInfoDb GenomicFeatures GenomicRanges Rsamtools RSQLite rtracklayer S4Vectors]; };
ensembldb = derive { name="ensembldb"; version="1.1.6"; sha256="1kr0yfdfhmd8g5pqazpbmaqcjw6ydv5whxf4c29d77x83alfncyh"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics DBI GenomeInfoDb GenomicFeatures GenomicRanges Rsamtools RSQLite rtracklayer S4Vectors]; };
epigenomix = derive { name="epigenomix"; version="1.9.2"; sha256="0l7pa2nyllf7imapbxqavyg3h0ba3wc1bhrhz7a7bc8rr8qyq0w1"; depends=[beadarray Biobase BiocGenerics GenomicRanges IRanges Rsamtools S4Vectors SummarizedExperiment]; };
epivizr = derive { name="epivizr"; version="1.7.8"; sha256="01z80dbahjbf60d71hiqai5h5i546hvl2j737b4xjca9017g2wsg"; depends=[Biobase GenomeInfoDb GenomicFeatures GenomicRanges httpuv mime OrganismDbi R6 rjson rtracklayer S4Vectors SummarizedExperiment]; };
erccdashboard = derive { name="erccdashboard"; version="1.3.1"; sha256="10ya8gzd9z3b7kwm9yf7v1cbxpqi1r7ghxwy1sg6b646gf3g580v"; depends=[edgeR ggplot2 gplots gridExtra gtools limma locfit MASS plyr QuasiSeq qvalue reshape2 ROCR scales stringr]; };
erccdashboard = derive { name="erccdashboard"; version="1.3.2"; sha256="0vsjk6ba739c2hvx87gz0n3sn2cwfm1nhwk2jcb8ynv7gxww3p4l"; depends=[edgeR ggplot2 gplots gridExtra gtools limma locfit MASS plyr QuasiSeq qvalue reshape2 ROCR scales stringr]; };
erma = derive { name="erma"; version="0.1.2"; sha256="046m88bjfkv8xkmz8il6l0zbp0wcr7n6wvsv2lavcyl09qnjghs0"; depends=[BiocGenerics GenomicFiles GenomicRanges ggplot2 rtracklayer S4Vectors]; };
exomeCopy = derive { name="exomeCopy"; version="1.15.0"; sha256="1047k3whc8pjcrvb10dmykbc3c7ah4fgzsiqxw7asp4ksiqpj5ii"; depends=[GenomeInfoDb GenomicRanges IRanges Rsamtools]; };
exomePeak = derive { name="exomePeak"; version="1.9.1"; sha256="1lvzr8zsa61vj5qhd4yh9n8vmfw759b8gbpp6q9yxz1py1ky16y6"; depends=[GenomicAlignments GenomicFeatures Rsamtools rtracklayer]; };
explorase = derive { name="explorase"; version="1.33.0"; sha256="0405q21ivvchmb37jksv46kwxgbmyiavznizn39asv6wrsvw62az"; depends=[limma rggobi RGtk2]; };
fCI = derive { name="fCI"; version="0.99.10"; sha256="1gknc8pqznxkgdgc403s59xl6x9s8cdb5iql0q88kk8jcqc2fgyl"; depends=[FNN gtools psych rgl VennDiagram zoo]; };
fabia = derive { name="fabia"; version="2.15.0"; sha256="1631f6q30cxzaw7vqjacr44hwzrjbvk0sw3v41zagpbqbbr11swx"; depends=[Biobase]; };
facopy = derive { name="facopy"; version="1.3.0"; sha256="0nm7jds5c4p471qyzv61byl61frwnf71kkvcdrc876168bd6s9y3"; depends=[annotate cgdsr coin data_table DOSE FactoMineR ggplot2 GOstats graphite gridExtra igraph IRanges MASS nnet reshape2 Rgraphviz scales]; };
facopy = derive { name="facopy"; version="1.3.1"; sha256="091pgih7daxhz1lhynq98d5yfxv851dv64vl18dafsg3bp4k5ig5"; depends=[annotate cgdsr coin data_table DOSE FactoMineR ggplot2 GOstats graphite gridExtra igraph IRanges MASS nnet reshape2 Rgraphviz scales]; };
factDesign = derive { name="factDesign"; version="1.45.0"; sha256="08d7ma718s8rdbmk00jdbwn9d1g431iaff7hc4ra421drl95yql1"; depends=[Biobase]; };
farms = derive { name="farms"; version="1.21.0"; sha256="1c0k2ffjqfrhkw0d7h6a6sffh50qvbc7jqd3glgrvbwjnmsys34v"; depends=[affy Biobase MASS]; };
fastLiquidAssociation = derive { name="fastLiquidAssociation"; version="1.5.0"; sha256="0477z4inv374bv5qs6wr5lcndk0d4if4hf1qbwlvv070sh5001gi"; depends=[Hmisc LiquidAssociation WGCNA]; };
@ -683,7 +688,7 @@ flowCHIC = derive { name="flowCHIC"; version="1.3.0"; sha256="1g6kkmcja3am6dawdk
flowCL = derive { name="flowCL"; version="1.7.0"; sha256="0n7gsvsfvfcn1ysc2kzv564hnn963rg6zwzx70vzp8lzvg55z8db"; depends=[Rgraphviz SPARQL]; };
flowClean = derive { name="flowClean"; version="1.5.0"; sha256="1ggzsm1zrvg7x0x9jvjiqm5172cm6lvkmzkk5v38pjvhplqgx4hi"; depends=[bit changepoint flowCore sfsmisc]; };
flowClust = derive { name="flowClust"; version="3.7.01"; sha256="06y8sg5mdjzn3d18m5b3753q2g4s4yxm1v8vb6pkdszq88255w6k"; depends=[Biobase BiocGenerics clue corpcor ellipse flowCore flowViz graph MCMCpack mnormt RBGL]; };
flowCore = derive { name="flowCore"; version="1.35.5"; sha256="1w9x5ynbfglj620i4ffg3p18q16ig553rfd52j7r0adlx8w1hm9d"; depends=[BH Biobase BiocGenerics corpcor graph Rcpp rrcov]; };
flowCore = derive { name="flowCore"; version="1.35.7"; sha256="1j7819bwyrphwwh6hkcjyc7f7yy5bv2sy1qfc66519wswjr90qzn"; depends=[BH Biobase BiocGenerics corpcor graph Rcpp rrcov]; };
flowCyBar = derive { name="flowCyBar"; version="1.5.0"; sha256="160vyp9pglsrv23m0118506bikwzi2mm9b1qgsrxjnzls2lqvjfa"; depends=[gplots vegan]; };
flowDensity = derive { name="flowDensity"; version="1.3.0"; sha256="1z8s1d4qwavi5z8zmvac9yqyd19sma18z1jl129w6sl5964spi86"; depends=[car flowCore GEOmap gplots RFOC]; };
flowFP = derive { name="flowFP"; version="1.27.0"; sha256="15n57slfn0z4vzqhk38mfqzb22r6krafqyp11hv1xsllp8my2a5g"; depends=[Biobase BiocGenerics flowCore flowViz]; };
@ -702,39 +707,40 @@ flowType = derive { name="flowType"; version="2.7.0"; sha256="0zrwf7h62jd5xgs0kq
flowUtils = derive { name="flowUtils"; version="1.33.0"; sha256="0r7l8fbi3p1y7ql60czlqhxx4l0fzxv50phwkr5w85jxxldk2pjm"; depends=[Biobase corpcor flowCore flowViz graph RUnit XML]; };
flowVS = derive { name="flowVS"; version="1.1.0"; sha256="0g1zmcr1wd3xccx2z1akwk177innzrngmxc5r4hjanl37l0skrpq"; depends=[flowCore flowStats flowViz]; };
flowViz = derive { name="flowViz"; version="1.33.2"; sha256="11qbpf0yw1gjzgw3pb7mnqfvwd60nms4cwrwag8h36a5whfd158c"; depends=[Biobase flowCore hexbin IDPmisc KernSmooth lattice latticeExtra MASS RColorBrewer]; };
flowWorkspace = derive { name="flowWorkspace"; version="3.15.12"; sha256="1fw5xg93x92acg2vimp6ks9sxqkqc4vbkghvj4shagnck2zjs0dw"; depends=[BH Biobase BiocGenerics data_table dplyr flowCore flowViz graph gridExtra lattice latticeExtra ncdfFlow plyr RBGL RColorBrewer Rcpp Rgraphviz stringr XML]; };
flowcatchR = derive { name="flowcatchR"; version="1.3.0"; sha256="0zgbnfh3sq6s8y81al379lrif67w5xffc6n3fd5y8bp2wmdqmx8b"; depends=[abind BiocParallel colorRamps EBImage rgl]; };
flowWorkspace = derive { name="flowWorkspace"; version="3.15.15"; sha256="1chjfhij0d4li1q2nz5yqwgmmd4vlf5rcg81z1zfs2kc3c19is18"; depends=[BH Biobase BiocGenerics data_table dplyr flowCore flowViz graph gridExtra lattice latticeExtra ncdfFlow RBGL RColorBrewer Rcpp Rgraphviz stringr XML]; };
flowcatchR = derive { name="flowcatchR"; version="1.3.2"; sha256="1l1m709jfx6k13d9ayv9v355lhws6xnmz2bsklrzrkls25pfm04v"; depends=[abind BiocParallel colorRamps EBImage rgl]; };
fmcsR = derive { name="fmcsR"; version="1.11.4"; sha256="1ah1gyrhcyv4kqxi4n8yj14mgjh6v9l820k5hzb7fwbw74kh2pa5"; depends=[BiocGenerics ChemmineR RUnit]; };
focalCall = derive { name="focalCall"; version="1.3.0"; sha256="1g3vk72xnzy2vsjjq7dnmmxiy29qg2bqij1iim9psb2zd6w387r5"; depends=[CGHcall]; };
frma = derive { name="frma"; version="1.21.0"; sha256="0glsdwzlfba9j850s393jm6ada4j04nz4lilym81qvs9y9jccscp"; depends=[affy Biobase BiocGenerics DBI MASS oligo oligoClasses preprocessCore]; };
frmaTools = derive { name="frmaTools"; version="1.21.0"; sha256="1k5ghz0ddcypisw2l64cg3r9lhvvmdiv1gpbb9b56rw0sk27w0cr"; depends=[affy Biobase DBI preprocessCore]; };
frmaTools = derive { name="frmaTools"; version="1.21.1"; sha256="13x1k763gdkh9mab1nvsa45z7b0v2q4ilvhv47fvwagi5r11jf5w"; depends=[affy Biobase DBI preprocessCore]; };
gCMAP = derive { name="gCMAP"; version="1.13.0"; sha256="06qb51rxxjqanh92g0cj6kwnrcbgkc2f0slav2bxkh2rkrjpyvcn"; depends=[annotate AnnotationDbi Biobase Category DESeq genefilter GSEABase GSEAlm limma Matrix]; };
gCMAPWeb = derive { name="gCMAPWeb"; version="1.9.0"; sha256="0xn1iyvrw3idhwszvipf3y69i1w1azr5hhgklg57v9wibnq02q9g"; depends=[annotate AnnotationDbi Biobase BiocGenerics brew gCMAP GSEABase hwriter Rook yaml]; };
gQTLBase = derive { name="gQTLBase"; version="1.1.1"; sha256="033lfnn0zkkkzay25fkj7wizyd63jxr2nkgga22iwm8ffjgpyac0"; depends=[BatchJobs BBmisc BiocGenerics doParallel ff ffbase foreach GenomicRanges S4Vectors]; };
gQTLstats = derive { name="gQTLstats"; version="1.1.0"; sha256="1hc2lwvq5bzxjl7xap8ykr7ja9jxpp6ydalc582v2jz6r8yp0wx8"; depends=[AnnotationDbi BatchJobs Biobase BiocGenerics doParallel dplyr foreach gam GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gQTLBase IRanges limma reshape2 S4Vectors snpStats VariantAnnotation]; };
gQTLstats = derive { name="gQTLstats"; version="1.1.1"; sha256="0sav44fxh5m9402gip2qaql4rm81ymw7339732nw2lrjk2vm7l7l"; depends=[AnnotationDbi BatchJobs Biobase BiocGenerics doParallel dplyr foreach gam GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gQTLBase IRanges limma reshape2 S4Vectors snpStats SummarizedExperiment VariantAnnotation]; };
gaga = derive { name="gaga"; version="2.15.1"; sha256="17ccfnvrqq6p9dynlacxw4797n1h9773ilmsh53mzs52w1k2cybm"; depends=[Biobase coda EBarrays mgcv]; };
gage = derive { name="gage"; version="2.19.0"; sha256="1g8i3w715s10azw7xyzq6gjmz5ilxll4qcf367jn6dwz8xnf15dr"; depends=[AnnotationDbi graph KEGGREST]; };
gaggle = derive { name="gaggle"; version="1.37.0"; sha256="1429xffj08m3dgfp6z34ngwzaq0wyjm3wv3cwfxzl5pzzy200k41"; depends=[graph rJava RUnit]; };
gaia = derive { name="gaia"; version="2.13.0"; sha256="10vpz16plzi651aj1f5h3iwz6nzrrdnl9sgx3sgv5wmks2haqij4"; depends=[]; };
gaucho = derive { name="gaucho"; version="1.5.0"; sha256="0kl8fw1n6dkqmrjp0xri3w2fhx25llrjag7j50m2xh371zfw9chc"; depends=[GA graph heatmap_plus png Rgraphviz]; };
gcrma = derive { name="gcrma"; version="2.41.0"; sha256="03ncgd26hmj4l0mnnif1cf5qg99ir66d0mafx7wamrr930m17v8x"; depends=[affy affyio Biobase BiocInstaller Biostrings XVector]; };
gdsfmt = derive { name="gdsfmt"; version="1.5.6"; sha256="0xncblhsfzwzxmki0mir6khpjb4d5sjc452br8jq0hp9khl9j937"; depends=[]; };
gdsfmt = derive { name="gdsfmt"; version="1.5.8"; sha256="1p0vr17k0vq3ck13z0xn749ma4q8r03hfvfcijhyd3kg84hxj3f6"; depends=[]; };
geNetClassifier = derive { name="geNetClassifier"; version="1.9.2"; sha256="04k1j2hqbs75k250i8b17bb8b84mij0hyb3yk1jl1368mpn5vmhc"; depends=[Biobase e1071 EBarrays minet]; };
geecc = derive { name="geecc"; version="1.3.0"; sha256="0s955yg31papyny42nnqq711hawk5nn3dqgsf24ldz93vjiif9dr"; depends=[gplots hypergea MASS]; };
genArise = derive { name="genArise"; version="1.45.0"; sha256="07xyy6wa22sa0ziqvy1dvpmpq11j56aw70kvj834da003yvabmg1"; depends=[locfit tkrplot xtable]; };
geneRecommender = derive { name="geneRecommender"; version="1.41.0"; sha256="0c06xg7jbcn4lnrkwgwwdjq383a7d34svf9cdqlaz5fc662nl5v0"; depends=[Biobase]; };
geneRxCluster = derive { name="geneRxCluster"; version="1.5.0"; sha256="1m5jxv0qhm68iv6rwy91nkx2mz9b7zh9mdz98gva8mb6gm88iiig"; depends=[GenomicRanges IRanges]; };
genefilter = derive { name="genefilter"; version="1.51.0"; sha256="0zrav2zw7v67i564v20y02cn2ycyk9ms8cnj2b2l7ajd1lq5cp9s"; depends=[annotate AnnotationDbi Biobase survival]; };
genefu = derive { name="genefu"; version="1.19.0"; sha256="05rzq0dy4v7z57zqdg9v2csj3ncv2n76igbz2a9nvjpmqrgfcqlc"; depends=[amap biomaRt mclust survcomp]; };
genefu = derive { name="genefu"; version="2.0.0"; sha256="0vrp2di9pz4xdy2shkl7ccc4ri19q2mv75xl9fkzkan4gnamlkbj"; depends=[amap biomaRt mclust survcomp]; };
geneplotter = derive { name="geneplotter"; version="1.47.0"; sha256="03vl60rhhfh8imp0ihx83gq9r64gdnh2gjdm7pzi4yc03afqgaw8"; depends=[annotate AnnotationDbi Biobase BiocGenerics lattice RColorBrewer]; };
genoCN = derive { name="genoCN"; version="1.21.0"; sha256="10q16kch3gn6phx1zk3aii87f4liy5l6mp0kvjf29x6aam11l7c7"; depends=[]; };
genomation = derive { name="genomation"; version="1.1.5"; sha256="0x4pgs7g46giv6z92hqa0fgq3fbw5p2jm5h8qzbwsvir3y7fnf79"; depends=[GenomicAlignments GenomicRanges ggplot2 gridBase impute IRanges plyr readr reshape2 Rsamtools rtracklayer]; };
genomeIntervals = derive { name="genomeIntervals"; version="1.25.2"; sha256="145xg7pjihfg6qmjfmswf33hkxsnq8ml02x6s6y90giyxlmjqisk"; depends=[BiocGenerics GenomeInfoDb GenomicRanges intervals IRanges S4Vectors]; };
genomation = derive { name="genomation"; version="1.1.10"; sha256="1cxhap9h1g8a5q0jc7xpg00vcp9jrwqmn1v0vlh5ck54vnp672ks"; depends=[data_table GenomicAlignments GenomicRanges ggplot2 gridBase impute IRanges matrixStats plotrix plyr readr reshape2 Rsamtools rtracklayer]; };
genomeIntervals = derive { name="genomeIntervals"; version="1.25.3"; sha256="14ql99gny196nl8ss3pb9m0277nczx6qj9sj2vhwfrr9q9c3ja9a"; depends=[BiocGenerics GenomeInfoDb GenomicRanges intervals IRanges S4Vectors]; };
genomes = derive { name="genomes"; version="2.15.0"; sha256="1a172fz97b6xg4w91dcjbdr9kx0grzf71qn2j7zlyz52dcqppybb"; depends=[Biostrings GenomicRanges IRanges RCurl XML]; };
genoset = derive { name="genoset"; version="1.23.2"; sha256="0j23ym7v47fv2f2j25hfc4xh1113614ixdd1accx9gindbqf72cl"; depends=[Biobase BiocGenerics GenomeInfoDb GenomicRanges IRanges S4Vectors]; };
genoset = derive { name="genoset"; version="1.23.5"; sha256="1vs1yffrjmqz70qc9rbzrabv7271jrqyscb43g3dw5q1mjwifjvn"; depends=[Biobase BiocGenerics GenomeInfoDb GenomicRanges IRanges S4Vectors]; };
genotypeeval = derive { name="genotypeeval"; version="0.99.3"; sha256="1a0dxfdlcdxmsih8imhvd4mk40lzg9p8sryccqmycw360nwbxh1h"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicRanges ggplot2 IRanges rtracklayer VariantAnnotation]; };
gespeR = derive { name="gespeR"; version="1.1.0"; sha256="0hp2pw4z5kgj4av339v7r43is082c47ms422pwwa5f2pljijz2z6"; depends=[Biobase biomaRt cellHTS2 doParallel foreach ggplot2 glmnet Matrix reshape2]; };
ggbio = derive { name="ggbio"; version="1.17.1"; sha256="1pc98v500l476sa1krxrj24lfsnbs13ws9hdix3vxfkbklvqjww7"; depends=[Biobase BiocGenerics Biostrings biovizBase BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GGally ggplot2 gridExtra gtable Hmisc IRanges OrganismDbi reshape2 Rsamtools rtracklayer S4Vectors scales SummarizedExperiment VariantAnnotation]; };
ggtree = derive { name="ggtree"; version="1.1.8"; sha256="1y9h93wn0zmmaz4hdn2xgz226y8pak0lnix5wvv1xax7myzhkbyl"; depends=[ape Biostrings colorspace EBImage ggplot2 gridExtra jsonlite magrittr reshape2]; };
ggbio = derive { name="ggbio"; version="1.17.2"; sha256="09ffhppri2ibprpwps0zxsrpvbrymsnycriy4709x2ldp1ifjn9l"; depends=[Biobase BiocGenerics Biostrings biovizBase BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GGally ggplot2 gridExtra gtable Hmisc IRanges OrganismDbi reshape2 Rsamtools rtracklayer S4Vectors scales SummarizedExperiment VariantAnnotation]; };
ggtree = derive { name="ggtree"; version="1.1.10"; sha256="1p2cc500swcnfv5xa883dq60lgfx9lc080hjydn7zac0k2vvv42r"; depends=[ape Biostrings colorspace EBImage ggplot2 gridExtra jsonlite magrittr reshape2]; };
girafe = derive { name="girafe"; version="1.21.0"; sha256="11j9aiy6s5cdhwc9591vv344qnwlgn4hvwlp2rx47gccrnxxaqxi"; depends=[Biobase BiocGenerics Biostrings genomeIntervals intervals IRanges Rsamtools S4Vectors ShortRead]; };
globaltest = derive { name="globaltest"; version="5.23.0"; sha256="1cwgqq5i3v6pp5kp4qi0jxqfh09zgaj719mk4kci3wxb18dc6ql7"; depends=[annotate AnnotationDbi Biobase multtest survival]; };
gmapR = derive { name="gmapR"; version="1.11.0"; sha256="0vn5iz44gcp4k0y5y4pjw6m60w75k82kv25hmnjshh8cpcwqkxkp"; depends=[Biobase BiocParallel Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors VariantAnnotation]; };
@ -745,7 +751,7 @@ gpls = derive { name="gpls"; version="1.41.0"; sha256="050db8ag8wpngfkw686r9vjvd
gprege = derive { name="gprege"; version="1.13.0"; sha256="0z27521mjn5ipjq8wi3fbh2qw4k1q694l8268f8lypr9f357i1q4"; depends=[gptk]; };
graph = derive { name="graph"; version="1.47.2"; sha256="0db15kd5qf993qdbr7dl2wbw6bgyg3kiqvd1iziqdq6d2vvbpzbj"; depends=[BiocGenerics]; };
graphite = derive { name="graphite"; version="1.15.1"; sha256="1q3ybshd9yxivs1b5vj659c45qa8bf7r1dy3idg8g7glh9f2bgnl"; depends=[AnnotationDbi BiocGenerics graph]; };
groHMM = derive { name="groHMM"; version="1.3.0"; sha256="0kx574xs0k51wwkvm6rbrrgr76ziwkkyqhiy076yzfsfkm3d1jvf"; depends=[GenomicAlignments GenomicRanges IRanges MASS rtracklayer S4Vectors]; };
groHMM = derive { name="groHMM"; version="1.3.1"; sha256="1bwa2dc2hmp34grl1ki8wzqn5v12afrmcw0igdiv4j8sfgybw3w7"; depends=[GenomicAlignments GenomicRanges IRanges MASS rtracklayer S4Vectors]; };
gtrellis = derive { name="gtrellis"; version="1.1.1"; sha256="17jflcq97a3a7k735klj6pphn6ixyshggwi0n7b45jgkqi9j5s08"; depends=[circlize GetoptLong]; };
gwascat = derive { name="gwascat"; version="2.1.4"; sha256="13hvh6rvlh13n9dxx9g1q68qz4mxsvv4sh0kc1931b3vz2mfs0m0"; depends=[AnnotationHub BiocGenerics Biostrings GenomeInfoDb GenomicRanges gQTLstats Gviz IRanges Rsamtools rtracklayer S4Vectors snpStats VariantAnnotation]; };
h5vc = derive { name="h5vc"; version="2.3.0"; sha256="1cl00k13x03sm60gfkxmaf6ba9kw4186cnik08zn446fipxqypla"; depends=[abind BatchJobs BiocParallel Biostrings GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges reshape rhdf5 Rsamtools S4Vectors]; };
@ -775,10 +781,10 @@ inSilicoDb = derive { name="inSilicoDb"; version="2.5.0"; sha256="1w5irx042z8if0
inSilicoMerging = derive { name="inSilicoMerging"; version="1.13.0"; sha256="0zaqwachxn3anbjyn0akv0n2djg08475cdxz7c44ja635r1f6y1j"; depends=[Biobase]; };
intansv = derive { name="intansv"; version="1.9.0"; sha256="0vb5hls1yyw0x0ff2xcjmxplg0gar9g9xvs1bqw96bf9akcr12r9"; depends=[BiocGenerics GenomicRanges ggbio IRanges plyr]; };
interactiveDisplay = derive { name="interactiveDisplay"; version="1.7.2"; sha256="1ql4qr5m1xsn3z57p2ndfc4b0zmxgjj0d3gb937ikfljm43jkwyk"; depends=[AnnotationDbi BiocGenerics Category ggplot2 gridSVG interactiveDisplayBase plyr RColorBrewer reshape2 shiny XML]; };
interactiveDisplayBase = derive { name="interactiveDisplayBase"; version="1.7.0"; sha256="0032ljfx6pj0c11imfhxsxvrcn3gwyb6j29xl8xv48x8z44r0vas"; depends=[BiocGenerics shiny]; };
interactiveDisplayBase = derive { name="interactiveDisplayBase"; version="1.7.1"; sha256="00b32z45xh0n1hrj166ax71p2aka3df9b2440wq0zribb9jf1s02"; depends=[BiocGenerics shiny]; };
inveRsion = derive { name="inveRsion"; version="1.17.0"; sha256="1km1h75dh5q505x1ddlhvyqxy4c10wvlviiz2l8sv3g3m9mbd26h"; depends=[haplo_stats]; };
iontree = derive { name="iontree"; version="1.15.0"; sha256="0frq4f357n5w08nwz3m7s0hv858kgcnlvxb4907yrg1b11zpfvmm"; depends=[rJava RSQLite XML]; };
isobar = derive { name="isobar"; version="1.15.0"; sha256="0zkj2i1hhs9nwflnwidzpnqcs08vbv3vqwz244shs9i7h0c5fd16"; depends=[Biobase distr plyr]; };
isobar = derive { name="isobar"; version="1.15.1"; sha256="1i4zlfxbx94yb70bvd3wzlald2fi9ix4bhdlyim490rcdhb0lhyr"; depends=[Biobase distr plyr]; };
iterativeBMA = derive { name="iterativeBMA"; version="1.27.0"; sha256="18g04l2bksjc2563kd2fmjygpci6pdw9lxv4ax0kpbfvc7zwbz17"; depends=[Biobase BMA leaps]; };
iterativeBMAsurv = derive { name="iterativeBMAsurv"; version="1.27.0"; sha256="1l36lmxlwq16kzh8i8nbi8bbrgqc7im1b5pcc170q89x6rfgvyf7"; depends=[BMA leaps survival]; };
jmosaics = derive { name="jmosaics"; version="1.9.0"; sha256="00c84fh5798yyzmsy985b79fcf2yz8y8am13dj7xgnzxl5nj32v1"; depends=[mosaics]; };
@ -787,15 +793,15 @@ kebabs = derive { name="kebabs"; version="1.3.3"; sha256="10pnr5fd2ni4w69qp30q81
keggorthology = derive { name="keggorthology"; version="2.21.0"; sha256="1d3dz61llgmdnyqxqwv03pacfs97lzynzpjpmn7grf7bbpybjk2q"; depends=[AnnotationDbi DBI graph]; };
lapmix = derive { name="lapmix"; version="1.35.0"; sha256="1sps41l210h782bry6n8h55ghnlqn7s5dx0bx2805y5izz01linm"; depends=[Biobase]; };
les = derive { name="les"; version="1.19.0"; sha256="1b3zcvflwyybrh9pf33a0fn5qz6918sszjf0n666iqd3hh7zph8z"; depends=[boot fdrtool gplots RColorBrewer]; };
limma = derive { name="limma"; version="3.25.12"; sha256="1gl13qnbj4w2bzdxf1ml603r1ccyq0wv1ynlrgb8j9sa7z228ri9"; depends=[]; };
limmaGUI = derive { name="limmaGUI"; version="1.45.0"; sha256="05pqzb5nq3paddq2zw80gvdaf8rvynga8zs24rwzjpz3ylakqngr"; depends=[AnnotationDbi BiocInstaller gcrma limma R2HTML tkrplot xtable]; };
limma = derive { name="limma"; version="3.25.14"; sha256="136pvfqqf9jwdir543wblrv6z4fpha5x2dbwldj980yhj4aqz76d"; depends=[]; };
limmaGUI = derive { name="limmaGUI"; version="1.45.2"; sha256="1s1dn14d5yhmfqj4r3kaxavpxaxsjw2492fpijgq0v8dnwqhz190"; depends=[AnnotationDbi BiocInstaller gcrma limma R2HTML tkrplot xtable]; };
lmdme = derive { name="lmdme"; version="1.11.0"; sha256="0j41rfvbhz31vniax7njnslxd94lws4jjfv3hc2s1ihxnj41dcma"; depends=[limma pls]; };
logicFS = derive { name="logicFS"; version="1.39.0"; sha256="1sz4bxsg76437j42i6cpbqvj5a35q7dwhya4yh1gmknqjrrcrv56"; depends=[LogicReg mcbiopi]; };
logitT = derive { name="logitT"; version="1.27.0"; sha256="13gglwkvwrc5xr44ynz10qzyksry0wamk9mjlsfb18c2ncbnyypq"; depends=[affy]; };
lol = derive { name="lol"; version="1.17.1"; sha256="0adj2bg8akb3z0w3wqj6bdlypf9c587k5c2npx0l21hgy4qv7p8k"; depends=[Matrix penalized]; };
lpNet = derive { name="lpNet"; version="2.1.2"; sha256="0qy2ardh00gf3xkhqphvmdsnsxa4pjrdpcxpjs53nw68bcsbgy9g"; depends=[lpSolve nem]; };
lumi = derive { name="lumi"; version="2.21.2"; sha256="0nfkzf11lnpvyqng8ns6nf23qkap04fir8cbqngnzm6yddfk33dq"; depends=[affy annotate AnnotationDbi Biobase DBI GenomicFeatures GenomicRanges KernSmooth lattice MASS methylumi mgcv nleqslv preprocessCore RSQLite]; };
mAPKL = derive { name="mAPKL"; version="1.1.0"; sha256="1knjvwd0z4i70py0dqcngz56j78ylhcxsw8dyxj80ns5jzsdppbx"; depends=[AnnotationDbi apcluster Biobase clusterSim e1071 igraph limma multtest parmigene]; };
mAPKL = derive { name="mAPKL"; version="1.1.1"; sha256="1wya7fhr6xbjdc61q0hk7k2y3iivashdksqj6b8459c9cr1mn5sl"; depends=[AnnotationDbi apcluster Biobase clusterSim e1071 igraph limma multtest parmigene]; };
mBPCR = derive { name="mBPCR"; version="1.23.0"; sha256="0c0idj213l8gwxkh9sb03dr4jhlbwvkpghldccbjrqnk4jqs4zpp"; depends=[Biobase oligoClasses SNPchip]; };
mQTL_NMR = derive { name="mQTL.NMR"; version="1.3.0"; sha256="05q3p6pxi5x89z3zyrvdv5p2lzwr3as3zwcg8k0zm70liyczqcbx"; depends=[GenABEL MASS outliers qtl]; };
maCorrPlot = derive { name="maCorrPlot"; version="1.39.0"; sha256="14p6cliik2ar0x8q4x66p43lsdbz11sqa7szafqvk7aw3pbszgh4"; depends=[lattice]; };
@ -830,20 +836,21 @@ methylMnM = derive { name="methylMnM"; version="1.7.0"; sha256="08y13kkmafn2h55w
methylPipe = derive { name="methylPipe"; version="1.3.4"; sha256="17y9xsvl6wgm7kn8g35h3zh7bcqhy7qp2lia6dzx609i04a9br9f"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicRanges gplots Gviz IRanges marray Rsamtools S4Vectors SummarizedExperiment]; };
methylumi = derive { name="methylumi"; version="2.15.2"; sha256="174hikk5flwylifv7n8n67aps4np06klw240bdzfr347r8yrvikp"; depends=[annotate AnnotationDbi Biobase BiocGenerics genefilter GenomeInfoDb GenomicRanges ggplot2 illuminaio IRanges lattice matrixStats minfi reshape2 S4Vectors scales SummarizedExperiment]; };
mgsa = derive { name="mgsa"; version="1.17.0"; sha256="1nic4bgk3g3j2l6vr3i3msmid2bz0n7bq8f8zq26n45sr37wb4wq"; depends=[gplots]; };
miRLAB = derive { name="miRLAB"; version="0.99.2"; sha256="0q255w5myzv9hg27xz4k3ykxf6arpr3nf28ykf23szcw8p01dc80"; depends=[energy entropy glmnet gplots Hmisc httr impute limma pcalg RCurl Roleswitch stringr]; };
miRNApath = derive { name="miRNApath"; version="1.29.0"; sha256="07r37gzn0y5cp4awj2i638i2cn019rnp7b4hnaqi3gc71sdzb25c"; depends=[]; };
miRNAtap = derive { name="miRNAtap"; version="1.3.0"; sha256="0hmnhbbai04wp8hxrpgq04czfx2c49aihq7iiz86x9hzlj6xhgn6"; depends=[AnnotationDbi DBI plyr RSQLite sqldf stringr]; };
microRNA = derive { name="microRNA"; version="1.27.0"; sha256="1akq1yxc03v7jmpypmr8a9lx5h2nfdjp1y0433lyffbd49wia2gm"; depends=[Biostrings]; };
minet = derive { name="minet"; version="3.27.0"; sha256="1wnn3nlpa0ymk465ax2s65i3w9xplhwssvng9qs7p3v2z72p9nqp"; depends=[infotheo]; };
minfi = derive { name="minfi"; version="1.15.9"; sha256="1q21b57iw8lbzbjq96qmlmccijz0apr9clasrz4nbmbgyn97gba2"; depends=[beanplot Biobase BiocGenerics Biostrings bumphunter genefilter GenomeInfoDb GenomicRanges GEOquery illuminaio IRanges lattice limma MASS matrixStats mclust mixOmics nlme nor1mix preprocessCore quadprog RColorBrewer reshape S4Vectors siggenes SummarizedExperiment]; };
minfi = derive { name="minfi"; version="1.15.11"; sha256="14j5vw6vmfz2h85n4dmsnx7138mxwzfl961p8y5wh1brz4vr31iy"; depends=[beanplot Biobase BiocGenerics Biostrings bumphunter genefilter GenomeInfoDb GenomicRanges GEOquery illuminaio IRanges lattice limma MASS matrixStats mclust mixOmics nlme nor1mix preprocessCore quadprog RColorBrewer reshape S4Vectors siggenes SummarizedExperiment]; };
mirIntegrator = derive { name="mirIntegrator"; version="0.99.5"; sha256="0r8l1lgf9rdxnr0dvc8r05ahjf3q0r4syy9mzx4p3f04s0c78q3h"; depends=[AnnotationDbi ggplot2 graph Rgraphviz ROntoTools]; };
missMethyl = derive { name="missMethyl"; version="1.3.2"; sha256="05xk70z813jgwz9darqwh0f9ybycq9krig486b3751dd0xnjgmcq"; depends=[limma methylumi minfi ruv statmod stringr]; };
mitoODE = derive { name="mitoODE"; version="1.7.0"; sha256="182ifqh1g1yz8rbsxdqgk4hzlz3dwy0d03iklbg39cxy6qhgxqg4"; depends=[KernSmooth MASS minpack_lm]; };
mmnet = derive { name="mmnet"; version="1.7.0"; sha256="0za8a3j2fzyi15hd7l3ccw5qy3lyl7vihbcbixaw2kb81hmpphsa"; depends=[Biobase biom flexmix ggplot2 igraph KEGGREST Matrix plyr RCurl reshape2 RJSONIO stringr XML]; };
mogsa = derive { name="mogsa"; version="1.1.3"; sha256="0rzqlm0c4skjgic334nfd2s7p0xk86mv1zbwjk036nwf5lnmdd0i"; depends=[Biobase BiocGenerics cluster corpcor genefilter gplots graphite GSEABase svd]; };
mogsa = derive { name="mogsa"; version="1.1.5"; sha256="1xn2rrp9s3d84i7ln37iblnxadl1dsi7qd98k5xz71kq0v1ljpy4"; depends=[Biobase BiocGenerics cluster corpcor genefilter gplots graphite GSEABase svd]; };
monocle = derive { name="monocle"; version="1.3.0"; sha256="1ir0f80nsrvpl4i441irprd4pk1f53dxf1jnvnjg5zrkj7dz3wrw"; depends=[Biobase BiocGenerics cluster combinat fastICA ggplot2 igraph irlba limma matrixStats plyr reshape2 VGAM]; };
mosaics = derive { name="mosaics"; version="2.3.0"; sha256="1jv5sv6xyh5i5m7kypgwc5g3sfsf0n5n683gijxcvrrwpvvfpnqy"; depends=[IRanges lattice MASS Rcpp]; };
motifRG = derive { name="motifRG"; version="1.13.0"; sha256="01k47padfs393pprjyz9pp9z6vjqlxi6x10y51mhg0anqfb1sar2"; depends=[Biostrings BSgenome IRanges seqLogo XVector]; };
motifStack = derive { name="motifStack"; version="1.13.3"; sha256="08ddwy3yyydxaxs6qfh99va3v7xx57kq1pizqknxaar0p79x278w"; depends=[ade4 Biostrings grImport MotIV scales XML]; };
motifStack = derive { name="motifStack"; version="1.13.6"; sha256="0yp3k22i35hdmx5b5a9dk9mkdvglry6s8ck57gsl039ypf58kpja"; depends=[ade4 Biostrings grImport MotIV scales XML]; };
msa = derive { name="msa"; version="1.1.1"; sha256="0nqgx1zb3n8kk2l3dgilsamwzadnddif39q5br7qs9xl38hag4nr"; depends=[BiocGenerics Biostrings IRanges Rcpp S4Vectors]; };
msmsEDA = derive { name="msmsEDA"; version="1.7.0"; sha256="1hywj0vvrqq1zg62gr1rk4sblm201hgwz5kd78819apw5jf50fwd"; depends=[gplots MASS MSnbase RColorBrewer]; };
msmsTests = derive { name="msmsTests"; version="1.7.0"; sha256="1qvi91shpy02irppq6g6lq43sp3rk2j7n1nfnm2p9767rdhbj13b"; depends=[edgeR msmsEDA MSnbase qvalue]; };
@ -852,14 +859,14 @@ multiscan = derive { name="multiscan"; version="1.29.0"; sha256="0rp1nc8vjr8b0v9
multtest = derive { name="multtest"; version="2.25.2"; sha256="1gby3am0rp62lsijhbr8yx8y457yhrv2ghdb41kl53r59mw8ba4z"; depends=[Biobase BiocGenerics MASS survival]; };
muscle = derive { name="muscle"; version="3.11.0"; sha256="1s3apdcd0qj08bswn7smj7b93yv9qar7wrzyfkp5z3m16jgz979x"; depends=[Biostrings]; };
mvGST = derive { name="mvGST"; version="1.3.0"; sha256="1chskyx9hgymxg57p6y98rw743lapssx18axvl0r9f2zsmmfz9bn"; depends=[annotate AnnotationDbi GOstats gProfileR graph Rgraphviz stringr topGO]; };
mygene = derive { name="mygene"; version="1.5.1"; sha256="0f1ck375fqbz3ydjjg9qd9av8jbpc840nv3j83qic8g3r2pck8ij"; depends=[GenomicFeatures Hmisc httr jsonlite S4Vectors sqldf]; };
mygene = derive { name="mygene"; version="1.5.2"; sha256="0x40bnll85v94dnfpqrs8d9kx0zmdjbvgnqhcin1k9bshxqkypd9"; depends=[GenomicFeatures Hmisc httr jsonlite plyr S4Vectors sqldf]; };
mzID = derive { name="mzID"; version="1.7.1"; sha256="1pp0zfffz91g16y1kr81mbham64g00mm3q539ykj5az34g5q1fcm"; depends=[doParallel foreach iterators plyr ProtGenerics XML]; };
mzR = derive { name="mzR"; version="2.3.1"; sha256="19piyqgdxpi777nd4860d6mp0g4zzcf3wf7q7ilm99jqav9lfrn8"; depends=[Biobase BiocGenerics ProtGenerics Rcpp zlibbioc]; };
ncdfFlow = derive { name="ncdfFlow"; version="2.15.2"; sha256="0s65c26r6q8di73iwpkrx4g3d9dy6v18vna7yy7di5vsgy0phr9l"; depends=[BH Biobase flowCore flowViz Rcpp RcppArmadillo zlibbioc]; };
ncdfFlow = derive { name="ncdfFlow"; version="2.15.3"; sha256="0xhqis5pj5m4ib4xpkgg1afxzjc1827jw5k569aijr11qmi6jjxw"; depends=[BH Biobase flowCore flowViz Rcpp RcppArmadillo zlibbioc]; };
neaGUI = derive { name="neaGUI"; version="1.7.0"; sha256="198b0vrr5qp66z4sccwy6rh8sjxpw3qjkdryygg1baxq91ra76p1"; depends=[hwriter]; };
nem = derive { name="nem"; version="2.43.0"; sha256="1d357gh8binh0fwg1z0mzjzq3nyhazg9dnnf7aqk6gjfgsjda9i8"; depends=[boot e1071 graph limma plotrix RBGL RColorBrewer Rgraphviz statmod]; };
netbenchmark = derive { name="netbenchmark"; version="1.1.6"; sha256="07q5a9kxq5r0ch32q68vxb4gxl6r5zhw6d06b8c89h42cby2qdfp"; depends=[c3net GeneNet minet PCIT pracma randomForest Rcpp]; };
netbiov = derive { name="netbiov"; version="1.3.0"; sha256="0d6xc74ivzvi0n9ndfgc0m9y79mwdbs344lxv9nps4igd7aaxh34"; depends=[igraph]; };
netbiov = derive { name="netbiov"; version="1.3.1"; sha256="1v1iddwgz7nn0flgald0nrg96wm8pvdlwjnh8bql8y5x5sm58lmv"; depends=[igraph]; };
nethet = derive { name="nethet"; version="1.1.0"; sha256="1xklqhwfmv1sk5h3x2g1jjbl5higrzhfj0mvap15vr2agax5hbg5"; depends=[CompQuadForm GeneNet ggm ggplot2 glasso glmnet GSA huge ICSNP limma mclust multtest mvtnorm network parcor]; };
netresponse = derive { name="netresponse"; version="1.19.0"; sha256="0blgcfbhwns4khnsd3m2yafmihr63kh3zsf7imphim0cdrx67xks"; depends=[dmt ggplot2 graph igraph mclust minet plyr qvalue RColorBrewer reshape Rgraphviz]; };
networkBMA = derive { name="networkBMA"; version="1.11.0"; sha256="09wf696s8n30nnadfds58flv8sv2gamgnw6pzz80isfc3178h1n6"; depends=[BMA Rcpp RcppArmadillo RcppEigen]; };
@ -874,12 +881,12 @@ oligoClasses = derive { name="oligoClasses"; version="1.31.1"; sha256="0likyfm4x
omicade4 = derive { name="omicade4"; version="1.9.3"; sha256="00dr419qd563d75srypc02j6m5v281995mrh0r6fylz5bmi9bbks"; depends=[ade4 made4]; };
oneChannelGUI = derive { name="oneChannelGUI"; version="1.35.0"; sha256="1diclgl4zkzzyz705cyqx983bw4zqw03rx7fn9515w0ifl0bk1r4"; depends=[affylmGUI Biobase Biostrings chimera IRanges Rsamtools siggenes tkrplot tkWidgets]; };
ontoCAT = derive { name="ontoCAT"; version="1.21.0"; sha256="10d0a0fxg2h9gf6d1jbilxxg8irbqb1k526689qkdn2zh0qjvv04"; depends=[rJava]; };
openCyto = derive { name="openCyto"; version="1.7.2"; sha256="1x92yam7zdmsf6x0xqydwz70qmh3gzzi64mbiwrihr8abcjmhjhd"; depends=[Biobase clue data_table flowClust flowCore flowStats flowViz flowWorkspace graph gtools ks lattice MASS ncdfFlow plyr R_utils RBGL RColorBrewer Rcpp rrcov]; };
oposSOM = derive { name="oposSOM"; version="1.5.2"; sha256="0zvclv05sfgk0mq169igaqhqmx2hqj3iwrxrjgryy276xjywhxcr"; depends=[ape Biobase biomaRt fastICA fdrtool igraph KernSmooth pixmap scatterplot3d som]; };
pRoloc = derive { name="pRoloc"; version="1.9.3"; sha256="09pi362w1vfcx6fsr6bbsjqq9wq93dzhw0myavxsj11g3pnqh66n"; depends=[Biobase BiocGenerics BiocParallel biomaRt caret class e1071 FNN ggplot2 gtools kernlab knitr lattice MASS mclust MLInterfaces MSnbase mvtnorm nnet plyr proxy randomForest RColorBrewer Rcpp RcppArmadillo sampling scales]; };
pRolocGUI = derive { name="pRolocGUI"; version="1.3.0"; sha256="1k7r8fhj4fqizk1w76mfcdd9sj3y7vxiq3kzfrkbk674gl1jsgmq"; depends=[MSnbase pRoloc shiny]; };
openCyto = derive { name="openCyto"; version="1.7.4"; sha256="1q07s7rv19yahlpjpvsrhbvld6n2bf7jv7lfrgs6syfl3fwrs008"; depends=[Biobase clue data_table flowClust flowCore flowStats flowViz flowWorkspace graph gtools ks lattice MASS ncdfFlow plyr R_utils RBGL RColorBrewer Rcpp rrcov]; };
oposSOM = derive { name="oposSOM"; version="1.5.4"; sha256="0f06wmy1n9gl41x4x7q1fcfxaw6y6qkrmb4ypg9j6v7xjhjpfj03"; depends=[ape Biobase biomaRt fastICA fdrtool igraph KernSmooth pixmap scatterplot3d som]; };
pRoloc = derive { name="pRoloc"; version="1.9.5"; sha256="0fsgz5fl29s2lkgm1dqcymw5gjc1lp4mdafqx9fa5l1rhlg81hyr"; depends=[Biobase BiocGenerics BiocParallel biomaRt caret class e1071 FNN ggplot2 gtools kernlab knitr lattice MASS mclust MLInterfaces MSnbase mvtnorm nnet plyr proxy randomForest RColorBrewer Rcpp RcppArmadillo sampling scales]; };
pRolocGUI = derive { name="pRolocGUI"; version="1.3.2"; sha256="08q1cavlxryx9isn2wsw8r0bv795hgzkyfx95ycxxdwh6vdvnnyl"; depends=[DT MSnbase pRoloc scales shiny]; };
paircompviz = derive { name="paircompviz"; version="1.7.0"; sha256="0sf80ji20q6kaqw2747an9b51xxwhl55yj5y7q6j68gif1ndkzl4"; depends=[Rgraphviz]; };
pandaR = derive { name="pandaR"; version="1.1.0"; sha256="03aa0s1mifq5hyg4xshbjqz9javphgb11135zvfg8cqdq34dzg4m"; depends=[]; };
pandaR = derive { name="pandaR"; version="1.1.1"; sha256="0rp8qk5cn5zj0nypkhmxjpja6lkjxd3hw2dkl4gaisayhiqlfk3g"; depends=[igraph matrixStats]; };
panp = derive { name="panp"; version="1.39.0"; sha256="163yii12bhw0skzhwrjbavpsgsl2aygj8x9cilzj9pqsqakvinna"; depends=[affy Biobase]; };
parglms = derive { name="parglms"; version="1.1.0"; sha256="1msk5ygl030rczm10rp9xnb461cbzcs7qqk6jqk8xhv5dycnwnbd"; depends=[BatchJobs BiocGenerics BiocParallel]; };
parody = derive { name="parody"; version="1.27.0"; sha256="06lrzix8ydc41siy21fqkf3z6krj07p5v38pzan8jzzhqpwlq4iz"; depends=[]; };
@ -890,7 +897,7 @@ paxtoolsr = derive { name="paxtoolsr"; version="1.3.1"; sha256="0pv4zcl12yxidiy3
pcaGoPromoter = derive { name="pcaGoPromoter"; version="1.13.1"; sha256="0a1yfi16sadp5fj112mlq9har0yggp8amn8v4v18jzfrb8aiacsj"; depends=[AnnotationDbi Biostrings ellipse]; };
pcaMethods = derive { name="pcaMethods"; version="1.59.0"; sha256="12b8qdd38xgpzisz0lm9xkwq22z5ciq7b8i11z3na1wynvim3nll"; depends=[Biobase BiocGenerics MASS Rcpp]; };
pcot2 = derive { name="pcot2"; version="1.37.0"; sha256="023ly5jgq8zc7k73mfqvra13mask54l7f62dznjh1dcjpv6xgw4p"; depends=[amap Biobase]; };
pdInfoBuilder = derive { name="pdInfoBuilder"; version="1.33.1"; sha256="1vyw3ggh247km4qag1gy3wz9v338na4hlxmqz57mv51gp7fw6v1l"; depends=[affxparser Biobase BiocGenerics Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pdInfoBuilder = derive { name="pdInfoBuilder"; version="1.33.2"; sha256="026l6klpf93h42xgrbjyl022l0d0722gp7cqqgq4j8nb0wydg8l2"; depends=[affxparser Biobase BiocGenerics Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pdmclass = derive { name="pdmclass"; version="1.41.0"; sha256="0361s7d6n9wn65pxks3alr8ycqjcgv9dvvb2n9xqiqawyki1nvpm"; depends=[Biobase mda]; };
pepStat = derive { name="pepStat"; version="1.3.0"; sha256="003gqcs5m5b8mil9r1ydadhcc086nqmdk6i1xz4kkdpkcyxbyz7p"; depends=[Biobase data_table fields GenomicRanges ggplot2 IRanges limma plyr]; };
pepXMLTab = derive { name="pepXMLTab"; version="1.3.0"; sha256="0rbcj59vsbq8zqxq4h1v077jgpz7l607zalc4lhw9yn8l5lij4j8"; depends=[XML]; };
@ -934,8 +941,9 @@ qusage = derive { name="qusage"; version="1.9.0"; sha256="1dg8qchhqfvak5cqjs9v30
qvalue = derive { name="qvalue"; version="2.1.0"; sha256="0qgsqjb90qnf5a77n3zf5dcb5agdbj4hlk3swh1hrjg9iqcs76g0"; depends=[ggplot2 reshape2]; };
r3Cseq = derive { name="r3Cseq"; version="1.15.0"; sha256="0pi5aq3dbivk23x6axwbqa4danbsvn623icw6xvlh3i71v8m5rkw"; depends=[Biostrings data_table GenomeInfoDb GenomicRanges IRanges qvalue RColorBrewer Rsamtools rtracklayer sqldf VGAM]; };
rBiopaxParser = derive { name="rBiopaxParser"; version="2.7.0"; sha256="1ni8kaivdxqxv8fj2qf5vnwzmmamfd073l1p4072pnfxpn7rn0p4"; depends=[data_table XML]; };
rCGH = derive { name="rCGH"; version="0.99.6"; sha256="1iqw7za7sy8z9flh537xdxx7gcvq6l3nsbszg68c9ja5lmlm2pmj"; depends=[aCGH affy AnnotationDbi BiocGenerics DNAcopy GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 lattice limma mclust plyr RUnit shiny]; };
rGADEM = derive { name="rGADEM"; version="2.17.0"; sha256="1xwypnpf7sdaqszfmallgg2314g866xbi9q342yhds2fkiw9sp65"; depends=[Biostrings BSgenome IRanges seqLogo]; };
rGREAT = derive { name="rGREAT"; version="1.1.0"; sha256="1rd4cjwh4rrqgfg15k32br0iv15j99797z7lx7789wc1zxkpzvg3"; depends=[GenomicRanges GetoptLong IRanges RCurl rjson]; };
rGREAT = derive { name="rGREAT"; version="1.1.2"; sha256="0wwwpbxp8263jgkja6szcwqvijig8cfxdb66hvjqq69h9lqg9bkx"; depends=[GenomicRanges GetoptLong IRanges RCurl rjson]; };
rHVDM = derive { name="rHVDM"; version="1.35.0"; sha256="0y2vm6xsdsz174xrs22p54z5f5rxqcx937yf02ilv0bnfa0r06hj"; depends=[affy Biobase minpack_lm R2HTML]; };
rMAT = derive { name="rMAT"; version="3.19.0"; sha256="0nhmf1hbiqwzb9035405f8asnhh2ywj4bm9wdlgbafyhiw6qik98"; depends=[affxparser Biobase BiocGenerics IRanges]; };
rRDP = derive { name="rRDP"; version="1.3.0"; sha256="0q373nfs4ynjnmq9rp0c0ficnnylwb2gf1j0bzlnxcd2cwz215zv"; depends=[Biostrings]; };
@ -943,7 +951,7 @@ rSFFreader = derive { name="rSFFreader"; version="0.17.1"; sha256="105qlrjq4777k
rTANDEM = derive { name="rTANDEM"; version="1.9.0"; sha256="08r73kv83w8rfglbqf2zvczj4yix7sfhvrz93wk22nry04jfgccr"; depends=[data_table Rcpp XML]; };
rTRM = derive { name="rTRM"; version="1.7.1"; sha256="06p38i0hif1kjsy4xa88jhfl5giprq8gfa15zh1yv1qdqhaf1v1m"; depends=[AnnotationDbi DBI igraph RSQLite]; };
rTRMui = derive { name="rTRMui"; version="1.7.0"; sha256="132cm40hxhb4apdidifbw90jyxhlz0dqxgqsr6awv8q6dy9jpfw4"; depends=[MotifDb rTRM shiny]; };
rain = derive { name="rain"; version="1.3.0"; sha256="0ak8wbhsglnylzy1jzh9hb2yxqjzmspvj98x10vf3qmgbqc30i4y"; depends=[gmp multtest]; };
rain = derive { name="rain"; version="1.3.1"; sha256="0hzfrab9b67wk9kkkx7bn1w2imhlq4j8mi3fch3ij42081g8plww"; depends=[gmp multtest]; };
rama = derive { name="rama"; version="1.43.0"; sha256="1siqzb0b9j51b06aijz85xn6c9v4dqvcw7scmrlfpf18dihqaig1"; depends=[]; };
randPack = derive { name="randPack"; version="1.15.0"; sha256="0m9729h3fia15rcgxznz4hmlz7abz8xkbn1ffc3l8qhqks5j50f7"; depends=[Biobase]; };
rbsurv = derive { name="rbsurv"; version="2.27.0"; sha256="1v97vrralg445zn8s3km7vmhlxhkv8bdwcj90fyvd6kfk7gm4xc7"; depends=[Biobase survival]; };
@ -953,12 +961,13 @@ regionReport = derive { name="regionReport"; version="1.3.8"; sha256="0gpifx0x2k
regioneR = derive { name="regioneR"; version="1.1.1"; sha256="1wylrkqiv5lc9rw3mc1by88ckx437jwhlgyg5kasvpry003rm72c"; depends=[BSgenome GenomicRanges memoise rtracklayer]; };
rfPred = derive { name="rfPred"; version="1.7.0"; sha256="0k1z7bqdjmm668kipz8c74kd9k1vw2pcjbirxdi88clrclz3i47y"; depends=[data_table GenomicRanges IRanges Rsamtools]; };
rgsepd = derive { name="rgsepd"; version="1.1.0"; sha256="1rvzlzh43j3sj2vrhmg13hl4wq3bg9hml3xq2dpx28lapynywm41"; depends=[AnnotationDbi biomaRt DESeq2 GenomicRanges goseq gplots hash]; };
rhdf5 = derive { name="rhdf5"; version="2.13.4"; sha256="0vby0cpsc22jrq37p3sxj6f3q0l238d28lx0p558mh8nks9fkai1"; depends=[zlibbioc]; };
rhdf5 = derive { name="rhdf5"; version="2.13.5"; sha256="1k2hjzzj2irs7jap7g4ys0gd3iymnnbbyvyv986y9pq68p4f1nr0"; depends=[zlibbioc]; };
riboSeqR = derive { name="riboSeqR"; version="1.3.0"; sha256="0jlh5q1hkxkfvy496hlbwfkl17k36n304yiyz9f0azq5kv7jz1y2"; depends=[abind GenomicRanges]; };
rnaSeqMap = derive { name="rnaSeqMap"; version="2.27.0"; sha256="1638vikgizcgg4bpfm61ak98smwy74dk5hyx73qjbisd49zvy5nk"; depends=[Biobase DBI DESeq edgeR GenomicAlignments GenomicRanges IRanges Rsamtools]; };
rnaseqcomp = derive { name="rnaseqcomp"; version="0.99.3"; sha256="0gyz91ayyr1834hr6jg1bnjiiiw4k75j3kn5pfmw9q8v9vg2fcsj"; depends=[RColorBrewer]; };
roar = derive { name="roar"; version="1.5.2"; sha256="0g0ylr49dvnbyb1kwj20hrh3y3x49n4rbdvg7mpdg1byrygcli3c"; depends=[GenomicAlignments GenomicRanges rtracklayer S4Vectors SummarizedExperiment]; };
rols = derive { name="rols"; version="1.11.6"; sha256="0wgzvwfq677dkqzzcq071xbh6v47vkcrzw66ch1vg348pcj58z0f"; depends=[Biobase XML]; };
ropls = derive { name="ropls"; version="1.1.2"; sha256="06z0ay0rdaawyvpy7dbdpxkwa8311rlb9plk4v52v830zibamhvs"; depends=[]; };
rpx = derive { name="rpx"; version="1.5.1"; sha256="048qldpx4zsp55jkr8g8vljiyidm9kzv4p1vwh1983y38qbz882v"; depends=[RCurl XML]; };
rqubic = derive { name="rqubic"; version="1.15.0"; sha256="19n613m7x48wkrfrhnd0ab9018m5dd7rf08qjbgphakwycssfgcw"; depends=[biclust Biobase BiocGenerics]; };
rsbml = derive { name="rsbml"; version="2.27.0"; sha256="10qmv5gpgqffnr5wqh7zik0l2d1cg0c0m3xak4r4bqmsd1y4dw01"; depends=[BiocGenerics graph]; };
@ -997,7 +1006,7 @@ snm = derive { name="snm"; version="1.17.0"; sha256="0ckn29nymlml8ldxqq5la1h3bwm
snpStats = derive { name="snpStats"; version="1.19.1"; sha256="1i4v737mrjjp8b24mihiv53ifgjcs7gaf9c4h2ling6gpasf39z8"; depends=[BiocGenerics Matrix survival zlibbioc]; };
soGGi = derive { name="soGGi"; version="1.1.2"; sha256="0vqsdlnbdimz1y2q37ycddc3ifykbr9d0hsg47kqh5wjzgsrl4h7"; depends=[BiocGenerics BiocParallel Biostrings chipseq GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges preprocessCore reshape2 Rsamtools rtracklayer S4Vectors SummarizedExperiment]; };
spade = derive { name="spade"; version="1.17.0"; sha256="02ba8ybgcldjmfsxywb0q7drm5nyhg6i72brvbrcgsq2ni0b7cpf"; depends=[Biobase flowCore igraph Rclusterpp]; };
specL = derive { name="specL"; version="1.3.3"; sha256="17067na171pn55w7znyhrn9bcibjpk7spvdw5l6gzrr5slh49qg8"; depends=[DBI protViz Rcpp RSQLite seqinr]; };
specL = derive { name="specL"; version="1.3.5"; sha256="0afaxclb4h797hm6rdybvp5dp85r1hmwgykj0q5h9ialqbjkmsv7"; depends=[DBI protViz Rcpp RSQLite seqinr]; };
spikeLI = derive { name="spikeLI"; version="2.29.0"; sha256="1f7in8zcbdz9i1cqdhvdcjl6g71vhz9hgd8whc0x9nf12qa87l7p"; depends=[]; };
spkTools = derive { name="spkTools"; version="1.25.0"; sha256="1a260c41jxg0yi2li1159pdp8dqbrxgvda88047k5pjrpzwg0738"; depends=[Biobase gtools RColorBrewer]; };
spliceR = derive { name="spliceR"; version="1.11.0"; sha256="0zfvbnlslpav4kz385sa5h1v73wrzirahxc6fx752zvn4kqbxdkj"; depends=[cummeRbund GenomicRanges IRanges plyr RColorBrewer rtracklayer VennDiagram]; };
@ -1011,12 +1020,12 @@ ssviz = derive { name="ssviz"; version="1.3.0"; sha256="1sl181mq7qsibn6f51mp8srl
staRank = derive { name="staRank"; version="1.11.0"; sha256="0hi3nzm0bdqrgjqjfvgz0qwymdrsd2c4csndw85hw9dj5ml1czqd"; depends=[cellHTS2]; };
stepNorm = derive { name="stepNorm"; version="1.41.0"; sha256="05g9qgxwfahyfq97pz3xmg49y7ml93w8n5hs5fv6f60l1nz59va1"; depends=[marray MASS]; };
stepwiseCM = derive { name="stepwiseCM"; version="1.15.0"; sha256="0r0ca29xpzki7lpr91rf99a1dvc5lmyls2v22pd1nxq4fb3g265l"; depends=[Biobase e1071 glmpath MAclinical pamr penalized randomForest snowfall tspair]; };
supraHex = derive { name="supraHex"; version="1.7.1"; sha256="02jv0mb17d79031b6a8sam0710a0njm2akkcj4bji40bx0bkqsna"; depends=[ape hexbin MASS]; };
survcomp = derive { name="survcomp"; version="1.19.0"; sha256="1czy90l49f0c31kh9p461wkdxb1iih64pvpbz31wv0mhyi2633i5"; depends=[bootstrap ipred KernSmooth prodlim rmeta SuppDists survival survivalROC]; };
supraHex = derive { name="supraHex"; version="1.7.2"; sha256="1ivi3lcck3ygxbask4v3kf8fkjni5ac9qz2pv55lnarws3s0xns7"; depends=[ape hexbin MASS]; };
survcomp = derive { name="survcomp"; version="1.19.1"; sha256="0nl3i8pbjyvpbn7d9fck5l1z3ayav2s2d943h6jvqdzc24qhb21w"; depends=[bootstrap ipred KernSmooth prodlim rmeta SuppDists survival survivalROC]; };
sva = derive { name="sva"; version="3.15.0"; sha256="0bskn3famgz24kjaz4lrrm94vw07g5d2103h9gh5qzhajdsc2d03"; depends=[genefilter mgcv]; };
switchBox = derive { name="switchBox"; version="1.3.0"; sha256="0bnb1wqxl3rv8w5rm0jw3x22yy8q27j11hpqnd792fvsz8ssr5h1"; depends=[]; };
synapter = derive { name="synapter"; version="1.11.0"; sha256="05gv788mx1bzizr07cg5cw98i4xm3qdh8hpys4xvr06as7q65h2g"; depends=[Biobase BiocParallel Biostrings cleaver hwriter knitr lattice MSnbase multtest qvalue RColorBrewer]; };
systemPipeR = derive { name="systemPipeR"; version="1.3.11"; sha256="1ssxavb1dwfma6dvd6jp4vnh4xz1nns0d14ccrrslssnch8knn3g"; depends=[annotate BatchJobs BiocGenerics Biostrings DESeq2 edgeR GenomicRanges ggplot2 GOstats limma pheatmap rjson Rsamtools ShortRead SummarizedExperiment VariantAnnotation]; };
systemPipeR = derive { name="systemPipeR"; version="1.3.16"; sha256="1b6c0glgnjhxg454s7cx9fhlyxa0l8pd5g6mpmdhf0hi9sk48qdl"; depends=[annotate BatchJobs BiocGenerics Biostrings DESeq2 edgeR GenomicRanges ggplot2 GOstats limma pheatmap rjson Rsamtools ShortRead SummarizedExperiment VariantAnnotation]; };
tRanslatome = derive { name="tRanslatome"; version="1.7.0"; sha256="1pcr1ghwkmkpsbkqh85yninvgb2za2vdsnax5bjkdj60wfj0d5bc"; depends=[anota Biobase DESeq edgeR GOSemSim gplots Heatplus limma plotrix RankProd samr sigPathway topGO]; };
ternarynet = derive { name="ternarynet"; version="1.13.0"; sha256="13pnzzlfzgkvqn323xhjvbaqzrk2fjq440ff9hjf09a53g14q7li"; depends=[igraph]; };
tigre = derive { name="tigre"; version="1.23.0"; sha256="177phidn72rcghb4mqfcr2wbfx5pz2vdw6jh7ahnki7s5q6fkldl"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI gplots RSQLite]; };
@ -1026,6 +1035,7 @@ tkWidgets = derive { name="tkWidgets"; version="1.47.0"; sha256="08vhxl7bdhnx0vk
topGO = derive { name="topGO"; version="2.21.0"; sha256="0hhglb4zqbjwqywn37h3klz7qgkypl2zmv1afibxjn70xc6wxq46"; depends=[AnnotationDbi Biobase BiocGenerics graph lattice SparseM]; };
trackViewer = derive { name="trackViewer"; version="1.5.2"; sha256="0kr6mkim32khr5zqm7wzrv03g9fvn4imxr0b7h8jl7sl896hv5ks"; depends=[GenomicAlignments GenomicFeatures GenomicRanges Gviz gWidgetstcltk pbapply Rsamtools rtracklayer scales]; };
tracktables = derive { name="tracktables"; version="1.3.0"; sha256="125z9b0rjvrrbg91bdzqrf3rrw0aajivpyxd1m9k1gcs6jmsaaj3"; depends=[GenomicRanges IRanges RColorBrewer Rsamtools stringr tractor_base XML XVector]; };
traseR = derive { name="traseR"; version="0.99.7"; sha256="0rj4jcjgpkqyhclbpmz2ha0afj5jzr9qcc7kl1cw6dbf1syxcj8p"; depends=[GenomicRanges IRanges]; };
triform = derive { name="triform"; version="1.11.3"; sha256="0j8arzd9zbd37kzz1ndr6ljzz21h7bi33p0iqzy83l5ifidd4kaj"; depends=[BiocGenerics IRanges yaml]; };
trigger = derive { name="trigger"; version="1.15.0"; sha256="1gsvp2rvry8pg9wfl9rggjfjxd0dcq3lrfkygfsl4jqcwnankpvc"; depends=[corpcor qtl qvalue sva]; };
trio = derive { name="trio"; version="3.7.1"; sha256="1g3q1pvqq2kp1vck9c7sj000inw5b7q0wvd14yr8096mm6ax8zka"; depends=[]; };
@ -1035,7 +1045,7 @@ tweeDEseq = derive { name="tweeDEseq"; version="1.15.0"; sha256="17mmkz0qpww2qwz
twilight = derive { name="twilight"; version="1.45.0"; sha256="0dzgapk34jzxhdadraq072fcj6rwqhkx2795rbn0dkk4vazqz4sn"; depends=[Biobase]; };
unifiedWMWqPCR = derive { name="unifiedWMWqPCR"; version="1.5.0"; sha256="055yvgwqjh91cf8d2hsacnbzq2z9c911cy3qd206azqlr6qyjiip"; depends=[BiocGenerics HTqPCR]; };
vbmp = derive { name="vbmp"; version="1.37.0"; sha256="1i4akvqrwj1r0ahi4vjxl7q780sa5bryj3rd2c5wg0ifd5l95h6s"; depends=[]; };
viper = derive { name="viper"; version="1.5.1"; sha256="0494601adg93i5gwam73x4x3m7vfg25xly6v2gj4aclaq9v6fpyf"; depends=[Biobase e1071 KernSmooth mixtools]; };
viper = derive { name="viper"; version="1.5.2"; sha256="0zcb03c469nz5ka85m54n8if1188hprh4qgdwap5zc7xgyc0lhya"; depends=[Biobase e1071 KernSmooth mixtools]; };
vsn = derive { name="vsn"; version="3.37.3"; sha256="09mzv7l5j20sx14m63q9ycpacrh2zayywiyckglfgndpc8v9wp08"; depends=[affy Biobase ggplot2 hexbin lattice limma]; };
vtpnet = derive { name="vtpnet"; version="0.9.0"; sha256="0gbs4pdwy88pjwsn3r2yspnfscz127awhlwym6g1lk8sxkb4mjxc"; depends=[doParallel foreach GenomicRanges graph gwascat]; };
wateRmelon = derive { name="wateRmelon"; version="1.9.0"; sha256="1lgadzv28j5qqqqsrjzakxmyj1q9j0hps3waa2nn9r7dq4cvallh"; depends=[limma lumi matrixStats methylumi ROC]; };

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pkgs/development/r-modules/cran-packages.nix
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