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{ lib |
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, stdenv |
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, fetchurl |
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, makeWrapper |
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, jre |
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, wget |
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, which |
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, gnused |
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, gawk |
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, coreutils |
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}: |
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|
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stdenv.mkDerivation rec { |
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pname = "nextflow"; |
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version = "21.10.6"; |
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|
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src = fetchurl { |
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url = "https://github.com/nextflow-io/nextflow/releases/download/v${version}/nextflow-${version}-all"; |
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sha256 = "0l9hi51vrhvfx3px2pxw7lp4h21n8ks50x4icfk3hbgl2hwf7fvx"; |
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}; |
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|
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nativeBuildInputs = [ makeWrapper ]; |
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buildInputs = [ jre wget which gnused gawk coreutils ]; |
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|
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dontUnpack = true; |
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|
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installPhase = '' |
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runHook preInstall |
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mkdir -p $out/bin |
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install -Dm755 $src $out/bin/nextflow |
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runHook postInstall |
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''; |
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postFixup = '' |
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wrapProgram $out/bin/nextflow --prefix PATH : ${lib.makeBinPath buildInputs} |
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''; |
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|
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meta = with lib; { |
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description = "A DSL for data-driven computational pipelines"; |
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longDescription = '' |
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Nextflow is a bioinformatics workflow manager that enables the development of portable and reproducible workflows. |
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|
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It supports deploying workflows on a variety of execution platforms including local, HPC schedulers, AWS Batch, Google Cloud Life Sciences, and Kubernetes. |
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|
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Additionally, it provides support for manage your workflow dependencies through built-in support for Conda, Docker, Singularity, and Modules. |
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''; |
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homepage = "https://www.nextflow.io/"; |
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changelog = "https://github.com/nextflow-io/nextflow/releases"; |
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license = licenses.asl20; |
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maintainers = [ maintainers.Etjean ]; |
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mainProgram = "nextflow"; |
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platforms = platforms.unix; |
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}; |
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} |
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