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rPackages: CRAN and BioC update

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Justin Bedo 3 years ago
parent e2c1e04a75
commit 20de18c0a6
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GPG Key ID: 2C18202C56C182BD
4 changed files with 540 additions and 489 deletions
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  1. 364
      pkgs/development/r-modules/bioc-annotation-packages.nix
  2. 120
      pkgs/development/r-modules/bioc-experiment-packages.nix
  3. 44
      pkgs/development/r-modules/bioc-packages.nix
  4. 501
      pkgs/development/r-modules/cran-packages.nix

364
pkgs/development/r-modules/bioc-annotation-packages.nix generated
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@ -120,9 +120,9 @@ in with self; {
BSgenome_Vvinifera_URGI_IGGP12Xv2 = derive2 { name="BSgenome.Vvinifera.URGI.IGGP12Xv2"; version="0.1"; sha256="1saavsi75gw33jphhm3qb5psyfrv850ss4cmqr4i7aw1kc0fvs1j"; depends=[BSgenome]; };
BSgenome_Vvinifera_URGI_IGGP8X = derive2 { name="BSgenome.Vvinifera.URGI.IGGP8X"; version="0.1"; sha256="0v0hi2pbbi5ynd92bvbv4bzr7bgv48kvyz62hdv7k9gh7s5pg0id"; depends=[BSgenome]; };
CTCF = derive2 { name="CTCF"; version="0.99.4"; sha256="1xp10ra53s59nznnxlgw115j46yg5sy13z6wmhqzv6y789s3p49k"; depends=[]; };
ChemmineDrugs = derive2 { name="ChemmineDrugs"; version="1.0.2"; sha256="0l47ac6lkycmghra2cbcdcxcv47ari8xg6lxpzilvkf4n6ld6064"; depends=[BiocGenerics ChemmineR RSQLite]; };
ChemmineDrugs = derive2 { name="ChemmineDrugs"; version="1.0.2"; sha256="0l47ac6lkycmghra2cbcdcxcv47ari8xg6lxpzilvkf4n6ld6064"; depends=[BiocGenerics ChemmineR]; };
DO_db = derive2 { name="DO.db"; version="2.9"; sha256="10bqqa124l61ivzy4mdd3z3ar9a6537qbxw23pc4y9w8a6dwnavn"; depends=[AnnotationDbi]; };
ENCODExplorerData = derive2 { name="ENCODExplorerData"; version="0.99.5"; sha256="00gfm5l8pxrfs4cw4jlw6n0cz5s31isg69k833n89800v26w3kvh"; depends=[data_table jsonlite RCurl]; };
ENCODExplorerData = derive2 { name="ENCODExplorerData"; version="0.99.5"; sha256="00gfm5l8pxrfs4cw4jlw6n0cz5s31isg69k833n89800v26w3kvh"; depends=[]; };
EnsDb_Hsapiens_v75 = derive2 { name="EnsDb.Hsapiens.v75"; version="2.99.0"; sha256="0jx6rf6v0j8yr07q3c1h7s121901dc400nm6xaiv4i7kb5czjn9c"; depends=[ensembldb]; };
EnsDb_Hsapiens_v79 = derive2 { name="EnsDb.Hsapiens.v79"; version="2.99.0"; sha256="0k94iml0417m3k086d0bzd83fndyb2kn7pimsfzcdmafgy6sxwgg"; depends=[ensembldb]; };
EnsDb_Hsapiens_v86 = derive2 { name="EnsDb.Hsapiens.v86"; version="2.99.0"; sha256="1gp7xrzddpvmh2vrcp571wyy00skxgxfl39ksj4h0hm1qay0fb2m"; depends=[ensembldb]; };
@ -133,7 +133,7 @@ in with self; {
EpiTxDb_Hs_hg38 = derive2 { name="EpiTxDb.Hs.hg38"; version="0.99.7"; sha256="1vsi24q902wqlnbxp8hks03x53n4yh5cmpyyxdvmxfbn1rxfvnyf"; depends=[AnnotationHub EpiTxDb]; };
EpiTxDb_Mm_mm10 = derive2 { name="EpiTxDb.Mm.mm10"; version="0.99.6"; sha256="16zsqnrb3ypwv0sqfmhqmkxqhp90k21in7bjhjf0zagywsyyhpww"; depends=[AnnotationHub EpiTxDb]; };
EpiTxDb_Sc_sacCer3 = derive2 { name="EpiTxDb.Sc.sacCer3"; version="0.99.5"; sha256="0qlifdpppxxn2xmb0f1ghjbx47a7rrkrzr2lvky5p8lb0dnh3zxv"; depends=[AnnotationHub EpiTxDb]; };
EuPathDB = derive2 { name="EuPathDB"; version="1.0.1"; sha256="0k23f34hnvcf2ig9sic7gf7pypc2jmwymg605qym7x32bjhi6rlm"; depends=[AnnotationHub AnnotationHubData Biobase BiocManager Biostrings GenomeInfoDbData GenomicRanges]; };
EuPathDB = derive2 { name="EuPathDB"; version="1.0.1"; sha256="0k23f34hnvcf2ig9sic7gf7pypc2jmwymg605qym7x32bjhi6rlm"; depends=[AnnotationHub AnnotationHubData Biobase Biostrings GenomeInfoDbData GenomicRanges]; };
FDb_FANTOM4_promoters_hg19 = derive2 { name="FDb.FANTOM4.promoters.hg19"; version="1.0.0"; sha256="04sn5x1r5fcbghzw6n1bvy0z8zyhrbk86wsqz1p5gk665vicz8rw"; depends=[AnnotationDbi Biostrings GenomicFeatures]; };
FDb_InfiniumMethylation_hg18 = derive2 { name="FDb.InfiniumMethylation.hg18"; version="2.2.0"; sha256="0vwzqzj49imjdsn8ssiwqi7qic7rqw5pbsiinyxgy7y10fn2i42a"; depends=[AnnotationDbi Biostrings GenomicFeatures org_Hs_eg_db TxDb_Hsapiens_UCSC_hg18_knownGene]; };
FDb_InfiniumMethylation_hg19 = derive2 { name="FDb.InfiniumMethylation.hg19"; version="2.2.0"; sha256="0gq90fvph6kgrpjb89nvzq6hl1k24swn19rgjh5g98l86mja6nk0"; depends=[AnnotationDbi Biostrings GenomicFeatures org_Hs_eg_db TxDb_Hsapiens_UCSC_hg19_knownGene]; };
@ -192,11 +192,11 @@ in with self; {
Norway981_db = derive2 { name="Norway981.db"; version="3.2.3"; sha256="04ngc2hilqi9m7933mnm7jcvkxlz68vqqh5b628db575vcxql9b9"; depends=[AnnotationDbi org_Hs_eg_db]; };
OperonHumanV3_db = derive2 { name="OperonHumanV3.db"; version="3.2.3"; sha256="082gff88cwk2p50q8g9bixggacaclgqcvk6w5dc11h9fkgvd160i"; depends=[AnnotationDbi org_Hs_eg_db]; };
Orthology_eg_db = derive2 { name="Orthology.eg.db"; version="3.14.0"; sha256="0irfwj52dm2dqw0y7fpp2i3xxma347cz8s75r73dklgs1ra5rp3r"; depends=[AnnotationDbi]; };
PANTHER_db = derive2 { name="PANTHER.db"; version="1.0.11"; sha256="0ckhrbhcxf7lq1hz1lrkrb7djjsfy7m0abf3665aagk6vvzigxy8"; depends=[AnnotationDbi AnnotationHub BiocFileCache RSQLite]; };
PANTHER_db = derive2 { name="PANTHER.db"; version="1.0.11"; sha256="0ckhrbhcxf7lq1hz1lrkrb7djjsfy7m0abf3665aagk6vvzigxy8"; depends=[AnnotationDbi AnnotationHub BiocFileCache]; };
PFAM_db = derive2 { name="PFAM.db"; version="3.14.0"; sha256="05nnjar0nljpmzz99hssmfm16y7lyy8vf6ncw823vyg8g5893h95"; depends=[AnnotationDbi]; };
POCRCannotation_db = derive2 { name="POCRCannotation.db"; version="3.2.3"; sha256="0ybvs4hrxpivdkhm0fxpib11vlxqqdk8prlyj78vj5qzyb3iy89d"; depends=[AnnotationDbi org_Hs_eg_db]; };
PartheenMetaData_db = derive2 { name="PartheenMetaData.db"; version="3.2.3"; sha256="0d37c5b7s3fgkkvg7sj7gl9ksrjk5pyyv54vkys8w3qwgsm8yrdz"; depends=[AnnotationDbi org_Hs_eg_db]; };
PolyPhen_Hsapiens_dbSNP131 = derive2 { name="PolyPhen.Hsapiens.dbSNP131"; version="1.0.2"; sha256="1kikygkli41sn3rqihz0924prmqg2264ifj29vmg1a7qccm0kf7c"; depends=[AnnotationDbi RSQLite VariantAnnotation]; };
PolyPhen_Hsapiens_dbSNP131 = derive2 { name="PolyPhen.Hsapiens.dbSNP131"; version="1.0.2"; sha256="1kikygkli41sn3rqihz0924prmqg2264ifj29vmg1a7qccm0kf7c"; depends=[AnnotationDbi VariantAnnotation]; };
RaExExonProbesetLocation = derive2 { name="RaExExonProbesetLocation"; version="1.15.0"; sha256="1vvcc5zlpgbnqak4y2xywyd82j3s61wvhhp2ap0nni14sdxrl3hd"; depends=[AnnotationDbi]; };
Rattus_norvegicus = derive2 { name="Rattus.norvegicus"; version="1.3.1"; sha256="0bpd7i5jvl2jvf822mhxankx7cqqr4l70xp4f7hcknxw3lxia2f1"; depends=[AnnotationDbi GenomicFeatures GO_db org_Rn_eg_db OrganismDbi TxDb_Rnorvegicus_UCSC_rn5_refGene]; };
RmiR_Hs_miRNA = derive2 { name="RmiR.Hs.miRNA"; version="1.0.7"; sha256="0pybw908mlfrskwhnhc0bfaaqw2z13kvr10apf68s74zs0ss57b4"; depends=[AnnotationDbi]; };
@ -204,8 +204,8 @@ in with self; {
RnAgilentDesign028282_db = derive2 { name="RnAgilentDesign028282.db"; version="3.2.3"; sha256="00qri74spbpym7krk1clx0kl429b1592afk5bfr3j8j3iw99g4af"; depends=[AnnotationDbi org_Rn_eg_db]; };
Roberts2005Annotation_db = derive2 { name="Roberts2005Annotation.db"; version="3.2.3"; sha256="1fc95c6x36n7zbr5ca680hyffxngma26gz0bdzylbw0w4mqmj6ga"; depends=[AnnotationDbi org_Hs_eg_db]; };
SHDZ_db = derive2 { name="SHDZ.db"; version="3.2.3"; sha256="077xy2zx3f4c01di18ki32xmrwgsc1qjci3wj33nmgsy5925zdxs"; depends=[AnnotationDbi org_Hs_eg_db]; };
SIFT_Hsapiens_dbSNP132 = derive2 { name="SIFT.Hsapiens.dbSNP132"; version="1.0.2"; sha256="1akqhmv9hp41q2jrvz4xvpdi30c4c6v4xbz6ykn6pdf0217p7xry"; depends=[AnnotationDbi RSQLite VariantAnnotation]; };
SIFT_Hsapiens_dbSNP137 = derive2 { name="SIFT.Hsapiens.dbSNP137"; version="1.0.0"; sha256="1472abqanbwziyynr851xzhg7ck8w1n98ymmggg7s46hzix5mlj8"; depends=[AnnotationDbi RSQLite VariantAnnotation]; };
SIFT_Hsapiens_dbSNP132 = derive2 { name="SIFT.Hsapiens.dbSNP132"; version="1.0.2"; sha256="1akqhmv9hp41q2jrvz4xvpdi30c4c6v4xbz6ykn6pdf0217p7xry"; depends=[AnnotationDbi VariantAnnotation]; };
SIFT_Hsapiens_dbSNP137 = derive2 { name="SIFT.Hsapiens.dbSNP137"; version="1.0.0"; sha256="1472abqanbwziyynr851xzhg7ck8w1n98ymmggg7s46hzix5mlj8"; depends=[AnnotationDbi VariantAnnotation]; };
SNPlocs_Hsapiens_dbSNP_20101109 = derive2 { name="SNPlocs.Hsapiens.dbSNP.20101109"; version="0.99.7"; sha256="1r1gvx563gv1lidi099yw7lvf8c0983yck9yf8r8iypiz1d4az73"; depends=[GenomicRanges IRanges S4Vectors]; };
SNPlocs_Hsapiens_dbSNP_20120608 = derive2 { name="SNPlocs.Hsapiens.dbSNP.20120608"; version="0.99.11"; sha256="0a1nyni8h3a7sq2sj5jfn3w6abkl5lwzbzhb8kg74v4359albcgm"; depends=[BSgenome GenomicRanges IRanges]; };
SNPlocs_Hsapiens_dbSNP141_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP141.GRCh38"; version="0.99.11"; sha256="1dl5gs9iqdvaplvggpngp37pzgbjaavw98qppv2cp65ih9rn0wc0"; depends=[BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; };
@ -335,9 +335,9 @@ in with self; {
genomewidesnp5Crlmm = derive2 { name="genomewidesnp5Crlmm"; version="1.0.6"; sha256="06dmwnjy3gb53y6nr02dmp22qzfl5d63wppazrabcqbzwimhnvp8"; depends=[]; };
genomewidesnp6Crlmm = derive2 { name="genomewidesnp6Crlmm"; version="1.0.7"; sha256="16qcxa32fmbdcv5dck0grsnqyfcqql7wpxa1l6andv9hrvabv2jx"; depends=[]; };
gp53cdf = derive2 { name="gp53cdf"; version="2.18.0"; sha256="11p69rxia8bqajix3jg34vnhczyxgpq50k5kdh878h7bn0mpg6bj"; depends=[AnnotationDbi]; };
grasp2db = derive2 { name="grasp2db"; version="1.1.0"; sha256="1aq19myhcl9kdmzy8f4c3ilf0s0ng99rl58jja2xlmqsm2hik7ya"; depends=[AnnotationHub dbplyr digest dplyr GenomeInfoDb RSQLite]; };
grasp2db = derive2 { name="grasp2db"; version="1.1.0"; sha256="1aq19myhcl9kdmzy8f4c3ilf0s0ng99rl58jja2xlmqsm2hik7ya"; depends=[AnnotationHub GenomeInfoDb]; };
greengenes13_5MgDb = derive2 { name="greengenes13.5MgDb"; version="2.0.0"; sha256="0j4pd653vlfpd9gq6gi459lra8xhyknjrzadkx9d3zjy0hcwpj7r"; depends=[]; };
gwascatData = derive2 { name="gwascatData"; version="0.99.6"; sha256="1xhmzl06vivq8x01h60q3c4vql67wjgjfs35j4ifmixp1qhicgga"; depends=[data_table]; };
gwascatData = derive2 { name="gwascatData"; version="0.99.6"; sha256="1xhmzl06vivq8x01h60q3c4vql67wjgjfs35j4ifmixp1qhicgga"; depends=[]; };
h10kcod_db = derive2 { name="h10kcod.db"; version="3.4.0"; sha256="0f30n339ib8q478a7axjdh8hzrqws762m680ha0sxm3a0nxwapgg"; depends=[AnnotationDbi org_Hs_eg_db]; };
h20kcod_db = derive2 { name="h20kcod.db"; version="3.4.0"; sha256="0csh59bgpn5xyaw6bfg7nvi9vcvjd4f66f0dr3xh7c6316835mnx"; depends=[AnnotationDbi org_Hs_eg_db]; };
hapmap370k = derive2 { name="hapmap370k"; version="1.0.1"; sha256="0n6rmrqcbl665a1l6jxk1gn6518x4gxadzy5dc9k9v01cbh3qzmw"; depends=[]; };
@ -492,7 +492,7 @@ in with self; {
illuminaRatv1_db = derive2 { name="illuminaRatv1.db"; version="1.26.0"; sha256="1krpp3pb3h2nrk5jrx54a3v6473qsjnz5wksysy8p4zpisvnxyfb"; depends=[AnnotationDbi org_Rn_eg_db]; };
indac_db = derive2 { name="indac.db"; version="3.2.3"; sha256="0jjkiyhjcjgk9888a96g5w80k8a652cww5dhidbdiq5d8gakbnji"; depends=[AnnotationDbi org_Dm_eg_db]; };
lumiHumanAll_db = derive2 { name="lumiHumanAll.db"; version="1.22.0"; sha256="0kn2m31b4q8r1lm4iwda9i62la4akj0c35pi3khbfvkmdrvbvhd2"; depends=[AnnotationDbi org_Hs_eg_db]; };
lumiHumanIDMapping = derive2 { name="lumiHumanIDMapping"; version="1.10.1"; sha256="0j29cd01z840jg4zq0yczjsqnya1vpx6hajqdq96msiy4i5fj534"; depends=[AnnotationDbi DBI lumi]; };
lumiHumanIDMapping = derive2 { name="lumiHumanIDMapping"; version="1.10.1"; sha256="0j29cd01z840jg4zq0yczjsqnya1vpx6hajqdq96msiy4i5fj534"; depends=[AnnotationDbi lumi]; };
lumiMouseAll_db = derive2 { name="lumiMouseAll.db"; version="1.22.0"; sha256="00iawk8wb1hnvmy898nl9hc85rfzzwi34lpnv2d37rw4wdn57z33"; depends=[AnnotationDbi org_Mm_eg_db]; };
lumiMouseIDMapping = derive2 { name="lumiMouseIDMapping"; version="1.10.0"; sha256="18mc7vwp2p53ns2paa4glj570shmbq9lk318g3p9nl09mxyadim9"; depends=[AnnotationDbi lumi]; };
lumiRatAll_db = derive2 { name="lumiRatAll.db"; version="1.22.0"; sha256="1yh0q8aw33xsn4phj04v0mhjn8xh3z06jrg7yfi9qz1c985z1gw6"; depends=[AnnotationDbi org_Rn_eg_db]; };
@ -529,8 +529,8 @@ in with self; {
mgug4121a_db = derive2 { name="mgug4121a.db"; version="3.2.3"; sha256="0947crjk8nj4bzgwz7anran7y2qhd1v8bp9f59ja3628rgjx6cz5"; depends=[AnnotationDbi org_Mm_eg_db]; };
mgug4122a_db = derive2 { name="mgug4122a.db"; version="3.2.3"; sha256="0x4mrjqd9wnppkp757f3azllbjiilxfds3cpbcrfsi07l8lf4mxx"; depends=[AnnotationDbi org_Mm_eg_db]; };
mi16cod_db = derive2 { name="mi16cod.db"; version="3.4.0"; sha256="1v64plvn173hdvjyy491qh2wd4mgbpwr27iq7lab9b3w1g3b1a82"; depends=[AnnotationDbi org_Mm_eg_db]; };
miRBaseVersions_db = derive2 { name="miRBaseVersions.db"; version="1.1.0"; sha256="09n0309glsj53g6wainl5m0vwnlx71ija5zmlqd0cpbhdis5zihw"; depends=[AnnotationDbi DBI gtools RSQLite]; };
miRNAtap_db = derive2 { name="miRNAtap.db"; version="0.99.10"; sha256="1j4igmyb9f4fa0a72hkmq3f7xgvyv38wai3mds5sd6mfgfc3brs3"; depends=[AnnotationDbi DBI miRNAtap RSQLite]; };
miRBaseVersions_db = derive2 { name="miRBaseVersions.db"; version="1.1.0"; sha256="09n0309glsj53g6wainl5m0vwnlx71ija5zmlqd0cpbhdis5zihw"; depends=[AnnotationDbi]; };
miRNAtap_db = derive2 { name="miRNAtap.db"; version="0.99.10"; sha256="1j4igmyb9f4fa0a72hkmq3f7xgvyv38wai3mds5sd6mfgfc3brs3"; depends=[AnnotationDbi miRNAtap]; };
mirbase_db = derive2 { name="mirbase.db"; version="1.2.0"; sha256="0l7ah1ia7q1h16av2v1qa9nqpr0604z5dlrq37kd0aiz8dcxyddk"; depends=[AnnotationDbi]; };
mirna102xgaincdf = derive2 { name="mirna102xgaincdf"; version="2.18.0"; sha256="03q71dq6b0plivj5bgpgx0pnqdwfgplakyk5ggj4w7kqwmr5k17i"; depends=[AnnotationDbi]; };
mirna10cdf = derive2 { name="mirna10cdf"; version="2.18.0"; sha256="146gc1dx071vawn29k2m31zpi3wdwykss4qh8znpmbp5qcja4hyb"; depends=[AnnotationDbi]; };
@ -616,175 +616,175 @@ in with self; {
org_Xl_eg_db = derive2 { name="org.Xl.eg.db"; version="3.14.0"; sha256="1ysrc12kzhlf5d86bz9dv7prjcwh68mww18dgivfamzqsk0x6wir"; depends=[AnnotationDbi]; };
paeg1acdf = derive2 { name="paeg1acdf"; version="2.18.0"; sha256="127pgxxp5wp3hgmafbzdzsk4gqnllq1m1gcsfyzkvpkvmbn4aa9n"; depends=[AnnotationDbi]; };
paeg1aprobe = derive2 { name="paeg1aprobe"; version="2.18.0"; sha256="0hbyd402wf9nzy2g93nhnf2zsi9jvhgfk0llxlyfk0kqxs0y4byy"; depends=[AnnotationDbi]; };
pd_081229_hg18_promoter_medip_hx1 = derive2 { name="pd.081229.hg18.promoter.medip.hx1"; version="0.99.4"; sha256="1h4925dmw0vfsnhllg55gswq3sxfmx9rcjzifdvgs9y27399psrr"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite]; };
pd_2006_07_18_hg18_refseq_promoter = derive2 { name="pd.2006.07.18.hg18.refseq.promoter"; version="1.8.1"; sha256="09593qkh3jqlgxlqrpl3gla3y1kcshnzlq6nf10xhlps0qdlskhx"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite]; };
pd_2006_07_18_mm8_refseq_promoter = derive2 { name="pd.2006.07.18.mm8.refseq.promoter"; version="0.99.3"; sha256="14cm7z1y7rsk5m2zazg27wvjabckb9ifwa1g091ckwn1jfaf7aqn"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite]; };
pd_2006_10_31_rn34_refseq_promoter = derive2 { name="pd.2006.10.31.rn34.refseq.promoter"; version="0.99.3"; sha256="0v0fa1hn5bwa15vg31dar2x0xfki0xby6qf5p1a0ivrx3pnvbsrl"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite]; };
pd_ag = derive2 { name="pd.ag"; version="3.12.0"; sha256="0kh7ridgihqpibazpxpf9y8qiznxm4nng39701abamadxb5r6qmq"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_aragene_1_0_st = derive2 { name="pd.aragene.1.0.st"; version="3.12.0"; sha256="0255bgsqz8fflnlnxw77wvv6rky46n3pcryk9yhw7nfx0cq19v4r"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_aragene_1_1_st = derive2 { name="pd.aragene.1.1.st"; version="3.12.0"; sha256="105qfxg8p9z0bzffm6zg16c5f6nnv5hddlpcxs0kp3daddap8h5s"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_ath1_121501 = derive2 { name="pd.ath1.121501"; version="3.12.0"; sha256="0j83s6402xrggnlnqjyphy577by9w1ncvf1az4immzaixdamaaxc"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_barley1 = derive2 { name="pd.barley1"; version="3.12.0"; sha256="0mha6w2zh7gi4y7ngkh84jaff50h8l9a0q9dwc8a00m5npkpkv4g"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_bovgene_1_0_st = derive2 { name="pd.bovgene.1.0.st"; version="3.12.0"; sha256="00ys19pdc7zgprfrhmk0pzfb5q96qy0vqxi2a6g28pxwf3367b30"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_bovgene_1_1_st = derive2 { name="pd.bovgene.1.1.st"; version="3.12.0"; sha256="0npjm9rpcwj5j8sh1mdr5j1fz7dbwrqvjh2jx69fpslry69i6daq"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_bovine = derive2 { name="pd.bovine"; version="3.12.0"; sha256="1g03za5jc8lz21wpx1h2rcxdwsx7ddmmnyflz46z35ginzy41g7h"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_bsubtilis = derive2 { name="pd.bsubtilis"; version="3.12.0"; sha256="07x4dss0zp3p315q38bi7xarycav2hr44x7jb1jx4dypr0jh98mh"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_cangene_1_0_st = derive2 { name="pd.cangene.1.0.st"; version="3.12.0"; sha256="0dcwy6gnlj51hkc2gsv6fdq02vczci4z37f3iy1n8zkvz5b4yw6c"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_cangene_1_1_st = derive2 { name="pd.cangene.1.1.st"; version="3.12.0"; sha256="0pgw1424rvg3k9m3z6ffiyfj91i930dx2slqd15bnvc9hrr75094"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_canine = derive2 { name="pd.canine"; version="3.12.0"; sha256="0xpisxv7c990w44gd5g2iwfzqi3618xa3mdps69z2j4bfrcm37vq"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_canine_2 = derive2 { name="pd.canine.2"; version="3.12.0"; sha256="1dx914yyq6ry88d6fipsxsvp41pgcgllznpwsqqm2xa99y85ka5y"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_celegans = derive2 { name="pd.celegans"; version="3.12.0"; sha256="08byc5xvnbfdlikv9118k52pk37br4k8hn86xypkrmbz67fzlzpd"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_charm_hg18_example = derive2 { name="pd.charm.hg18.example"; version="0.99.4"; sha256="0nqv3h4zp83vp7q49n956920x5hdfcbw4z3hlvmqx8dixbgr1jrg"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite]; };
pd_chicken = derive2 { name="pd.chicken"; version="3.12.0"; sha256="1alkhr297ar6iv7nrjxnlhmq3xvjzpl46mdckkbxw13w73vj6p32"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_chigene_1_0_st = derive2 { name="pd.chigene.1.0.st"; version="3.12.0"; sha256="0smfgx1brfla96ijsv3a3ljcn02kpbk6sczgp06dik3g0k54788h"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_chigene_1_1_st = derive2 { name="pd.chigene.1.1.st"; version="3.12.0"; sha256="013baf38h35fsxq0f32v00rizik8iq76jm1s8azkicv90bvw5g8k"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_chogene_2_0_st = derive2 { name="pd.chogene.2.0.st"; version="3.12.0"; sha256="0pljjz466y2aav9045qgr5hbrv7alyl3gw3br4a8knbijk6fbw15"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_chogene_2_1_st = derive2 { name="pd.chogene.2.1.st"; version="3.12.0"; sha256="0d9pslimh0w37yvvfgqljbr2z5arjn6kx0wnjhp19gcch44jvkr2"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_citrus = derive2 { name="pd.citrus"; version="3.12.0"; sha256="1792gsxdr24264n121zvspdq39ac3khaghv5j66rn2nzqds75qch"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_clariom_d_human = derive2 { name="pd.clariom.d.human"; version="3.14.1"; sha256="11q4s4q07fpkl5wpmhhjfkrp4l8i8gy1i8wc80aar84lp1261vvx"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_clariom_s_human = derive2 { name="pd.clariom.s.human"; version="3.14.1"; sha256="0a68mnwv735mi9k9qxs2vv4hnh76yg1n7jjyaw34g8m7405yjxxp"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_clariom_s_human_ht = derive2 { name="pd.clariom.s.human.ht"; version="3.14.1"; sha256="08fzm8xp6wa4x03vqb28dvlz3hiwv2q5n5h9m2np0g4g40hbhg89"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_clariom_s_mouse = derive2 { name="pd.clariom.s.mouse"; version="3.14.1"; sha256="15fc25840lnhv0rlxc98akda1gis1s4xn61ycvymjii3lgx8hwpk"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_clariom_s_mouse_ht = derive2 { name="pd.clariom.s.mouse.ht"; version="3.14.1"; sha256="1ka9mganvymml306yh196rqan333ykrmqp9dfl4xs9mz57p405kk"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_clariom_s_rat = derive2 { name="pd.clariom.s.rat"; version="3.14.1"; sha256="1bx0vipcw3vjpz59h5820yanwy7b8mxb8bkgwp3n58vm24x7l304"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_clariom_s_rat_ht = derive2 { name="pd.clariom.s.rat.ht"; version="3.14.1"; sha256="17fk4qiznh2ks7r4mzbv1gnpjca39n6rzshb5dw5n73rbnd24160"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_cotton = derive2 { name="pd.cotton"; version="3.12.0"; sha256="1h71klvndi32j7hb7cy2w6asf7lb1xhs5glxajnd30y7ksigba7l"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_cyngene_1_0_st = derive2 { name="pd.cyngene.1.0.st"; version="3.12.0"; sha256="1xkv8m346x1zrnp4bhbjk2xwfq5jkbprbh417bya8swqvcyv3zbj"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_cyngene_1_1_st = derive2 { name="pd.cyngene.1.1.st"; version="3.12.0"; sha256="1kicrk0n2lik32q9nkpfy8ydh8klsy6i5cy6m2grddv80g5hc6n4"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_cyrgene_1_0_st = derive2 { name="pd.cyrgene.1.0.st"; version="3.12.0"; sha256="1s7rrwcmaar230y90hhvrx3wxlp228j88pwdh2glap2pn3d3rlnd"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_cyrgene_1_1_st = derive2 { name="pd.cyrgene.1.1.st"; version="3.12.0"; sha256="0p7j8ygyx8f5aqyy847rfcc35hrkcavi1700af971jjrha3gllc0"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_cytogenetics_array = derive2 { name="pd.cytogenetics.array"; version="3.12.0"; sha256="0gd7q64zfxda9irdmmr92iqxlswaj5v4pklsfm96xkn8lxq34dlb"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_drogene_1_0_st = derive2 { name="pd.drogene.1.0.st"; version="3.12.0"; sha256="1zp85q3a2bayr0q5r0ij62kfypzngcz9v791xsf9n9k7nx6714fi"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_drogene_1_1_st = derive2 { name="pd.drogene.1.1.st"; version="3.12.0"; sha256="0yjxjzmcx2hh6rm15p9d36vfj77fwmd7q2kbjk8h7hbpkm72ssdf"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_drosgenome1 = derive2 { name="pd.drosgenome1"; version="3.12.0"; sha256="1cp3fs2g88yv50gkd6m769idlj7kci2g82wafn17ci65g64q0g05"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_drosophila_2 = derive2 { name="pd.drosophila.2"; version="3.12.0"; sha256="0rr3l6203nfzhz21wps7dfcifvzmbnixcr2piv5jdfh7birj23aa"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_e_coli_2 = derive2 { name="pd.e.coli.2"; version="3.12.0"; sha256="1nny0w0adg433n1i20q0jdmi5yy1anpa91dgrklpvxyxbr5902vz"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_ecoli = derive2 { name="pd.ecoli"; version="3.12.0"; sha256="0mi5i0cp5xz97pb3ic6qmwl3fp4byyddvas2npll4ngarl5wv5ag"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_ecoli_asv2 = derive2 { name="pd.ecoli.asv2"; version="3.12.0"; sha256="19pn7691cr0vakxlx0q0x3p1pfc0z8l5f14475bv2fr4djljhhma"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_elegene_1_0_st = derive2 { name="pd.elegene.1.0.st"; version="3.12.0"; sha256="1if8gwvvk9jybsrcwr8sayg1czchpnlmysa9plrm50g7r2ki7m4l"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_elegene_1_1_st = derive2 { name="pd.elegene.1.1.st"; version="3.12.0"; sha256="18v3n3ss3rl2ksvjg1jk1w0mprhhxra55znixfcd8ikqsrdfj2a2"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_equgene_1_0_st = derive2 { name="pd.equgene.1.0.st"; version="3.12.0"; sha256="01vcj6a6hm9j2fbhrz244sbig63j1jyxyg068q4hizpl9lpzaibd"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_equgene_1_1_st = derive2 { name="pd.equgene.1.1.st"; version="3.12.0"; sha256="0migyzmrgqvvnkl8w61qv26hj5kjy720q4ipamdn99z9s4r8cxrn"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_feinberg_hg18_me_hx1 = derive2 { name="pd.feinberg.hg18.me.hx1"; version="0.99.3"; sha256="1k50khs7mrp1qy9z0whm5drwv59m8zn7v0zxhv26bpvmwbrnlhfg"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite]; };
pd_feinberg_mm8_me_hx1 = derive2 { name="pd.feinberg.mm8.me.hx1"; version="0.99.3"; sha256="1xk4rmpxjh9mwijwglzlycg7bk2zk599fk7xbnk114rj216y2jsm"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite]; };
pd_felgene_1_0_st = derive2 { name="pd.felgene.1.0.st"; version="3.12.0"; sha256="1lf3lp3zjprfwni2nfdpkvj2j6y7hd7znmxqcgj46vccznc49hh6"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_felgene_1_1_st = derive2 { name="pd.felgene.1.1.st"; version="3.12.0"; sha256="027cgqxfgmlkx64y6nm9h36ji781fkrnnrdxblh8h4jwjd5n36rj"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_fingene_1_0_st = derive2 { name="pd.fingene.1.0.st"; version="3.12.0"; sha256="0l19h920cghw65nqbh79s1rwijqdl7k84km0iv1fgx0kxhh28xa0"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_fingene_1_1_st = derive2 { name="pd.fingene.1.1.st"; version="3.12.0"; sha256="1habbw9fvygailw73azfrvczgp6ap1az688vz8pklqq77vlqs1qz"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_genomewidesnp_5 = derive2 { name="pd.genomewidesnp.5"; version="3.14.1"; sha256="1kiqmcc07q2m7hkgqczqndk7frpwibpsi2c0ihr5av0vjrp118ak"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_genomewidesnp_6 = derive2 { name="pd.genomewidesnp.6"; version="3.14.1"; sha256="1f35nw987axlc5rsr97i7rwcy1dd8zjjj6jf4cg75y0la6rvhfw4"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_guigene_1_0_st = derive2 { name="pd.guigene.1.0.st"; version="3.12.0"; sha256="1rq5gbdm6k0shv82zy7vrqxahzffh1xikrd3a6d1ai67n129bv6f"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_guigene_1_1_st = derive2 { name="pd.guigene.1.1.st"; version="3.12.0"; sha256="0p53kkhaa4d6ib32sfnwvs363zir227dmzxp8yqma0z4kz0djdna"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_hc_g110 = derive2 { name="pd.hc.g110"; version="3.12.0"; sha256="014bb45m2pwwbz7aca6l6442188mkp5bsk46z7x18g0aa66p06hv"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_hg_focus = derive2 { name="pd.hg.focus"; version="3.12.0"; sha256="1qlkhxq76nb55c299g7x7x8wn8nx1mg4ra5b0faflsjirkh4b32s"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_hg_u133_plus_2 = derive2 { name="pd.hg.u133.plus.2"; version="3.12.0"; sha256="02ip0mf24lw818ij8xgk7cylb5q1059jwvbdd2aynqqwy2mg31h0"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_hg_u133a = derive2 { name="pd.hg.u133a"; version="3.12.0"; sha256="08bk5im2zkb1vif1i6bgfx068xcl5q5m0ac33zpscfdq4jashm7k"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_hg_u133a_2 = derive2 { name="pd.hg.u133a.2"; version="3.12.0"; sha256="1rlh62r5zmxllkc9izr6a4yr2n88flfz1rybwvi90yggc788chxy"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_hg_u133a_tag = derive2 { name="pd.hg.u133a.tag"; version="3.12.0"; sha256="1ndjzcydshh5f3cnrav91hi47bx92z6rqliiwirhx2cqk8bvz5yp"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_hg_u133b = derive2 { name="pd.hg.u133b"; version="3.12.0"; sha256="1mafh53bj6g30869pdyl59040m2crqqbfcbdpdxfpigxpqr3rb4c"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_hg_u219 = derive2 { name="pd.hg.u219"; version="3.12.0"; sha256="04kqvh5ilf83z2iwvfw7m8xsgjxy29vqayp1lgh38y48j0nn24dk"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_hg_u95a = derive2 { name="pd.hg.u95a"; version="3.12.0"; sha256="1c7d16im1xxs8v0ccn19klwv43qr6b4iw0k5hz9cl8m10jmyw49b"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_hg_u95av2 = derive2 { name="pd.hg.u95av2"; version="3.12.0"; sha256="1l3y2bhjk67jwxvxwn5rngzn5c2dzk4lk24cm74f6px845qw5sk7"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_hg_u95b = derive2 { name="pd.hg.u95b"; version="3.12.0"; sha256="0gyxh7nagya1hgh5vvwalxmhbqm9pii3l6h1mndvx2ib58msh49h"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_hg_u95c = derive2 { name="pd.hg.u95c"; version="3.12.0"; sha256="0p9yrwjw75r5dg3z0pl4yr04agjpqv9rz3in2faw3pqawdzndihq"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_hg_u95d = derive2 { name="pd.hg.u95d"; version="3.12.0"; sha256="0ygfx73b122b468zvr9lhw2vkr1aijasrazarqjqc8bjbfm4fybw"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_hg_u95e = derive2 { name="pd.hg.u95e"; version="3.12.0"; sha256="0cksi811m9fzjq5linlsarfswp3p7rdgks0js3chv91jr3v2z3a7"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_hg18_60mer_expr = derive2 { name="pd.hg18.60mer.expr"; version="3.12.0"; sha256="1lsfsgsj6gyv0q509d0axr6g2yv226zxqh8f2n1hw0kfxwl27bm8"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_ht_hg_u133_plus_pm = derive2 { name="pd.ht.hg.u133.plus.pm"; version="3.12.0"; sha256="1000f1d28yzc0kcdf380fkx3xlgla3kn4n9f2ddawzjb7igash92"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_ht_hg_u133a = derive2 { name="pd.ht.hg.u133a"; version="3.12.0"; sha256="14bnnxsn02mpyynn8bvl8c47id9l2wfakngbvpq4h5yjy689jm1c"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_ht_mg_430a = derive2 { name="pd.ht.mg.430a"; version="3.12.0"; sha256="10shsap47217p6zmb9fn86na7if965h45l2r787cisgyyn9n45mq"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_hta_2_0 = derive2 { name="pd.hta.2.0"; version="3.12.2"; sha256="004mm93wag59arzirws3cfqjv4whl8sbv558xxg7pj1ar026g4m3"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_hu6800 = derive2 { name="pd.hu6800"; version="3.12.0"; sha256="07dj0avpx53kwaab9s126pn844nal9kn3h288n1m0kihir2mrjmv"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_huex_1_0_st_v2 = derive2 { name="pd.huex.1.0.st.v2"; version="3.14.1"; sha256="1chlvjy1gvw5r8hfmkb34m3h7w2z4s5x9gsc50qbj84988k4gzga"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_hugene_1_0_st_v1 = derive2 { name="pd.hugene.1.0.st.v1"; version="3.14.1"; sha256="1ikd6h7wnyxm11j0had2wcsxfbfrwdfw9605bvvdgd63dlvdv5dk"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_hugene_1_1_st_v1 = derive2 { name="pd.hugene.1.1.st.v1"; version="3.14.1"; sha256="0bsvwr4h8j4niagnmf7d2jd714dqk4yzdhr664z6vpx6429s0rsw"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_hugene_2_0_st = derive2 { name="pd.hugene.2.0.st"; version="3.14.1"; sha256="02m5x9mrz4ca0w84ljmdpw7rnlzqbqdq0q5k4sg7izx99k5c8r59"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_hugene_2_1_st = derive2 { name="pd.hugene.2.1.st"; version="3.14.1"; sha256="07la78206cvilfm8l2fwrcyy3gpwnhn0p32ilv043ln9drka2r8h"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_maize = derive2 { name="pd.maize"; version="3.12.0"; sha256="02viqnqf02d75sbarxh1k76966yay5i6wwdx118s4c9nlr5q6aqg"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_mapping250k_nsp = derive2 { name="pd.mapping250k.nsp"; version="3.12.0"; sha256="10j8c18glhvg07zp6w84hlc6l3a3qkvcvfnq0blpjfdk3a2lndz7"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_mapping250k_sty = derive2 { name="pd.mapping250k.sty"; version="3.12.0"; sha256="1hpyijrkr6svxxhrdp6s4jjcvr44hhbrdhrzvnw5ywpykmbphryc"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_mapping50k_hind240 = derive2 { name="pd.mapping50k.hind240"; version="3.12.0"; sha256="1whpjdr4aql846cm8nzgs613pi12qdqfixhqcfv8wrqyks27kq6s"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_mapping50k_xba240 = derive2 { name="pd.mapping50k.xba240"; version="3.12.0"; sha256="1a1f3lh5ywhyjawdbj2fzban85c8jz70lfcv3pagd5piincjwxq8"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_margene_1_0_st = derive2 { name="pd.margene.1.0.st"; version="3.12.0"; sha256="1s4l57hw511cnzj197jvvzqs8ymfbf14khxcv4llg55prxnvvnfc"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_margene_1_1_st = derive2 { name="pd.margene.1.1.st"; version="3.12.0"; sha256="067jv9486win2kv563gr4vpc96lpl02zqd09cnma7ycd7l1nvj9s"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_medgene_1_0_st = derive2 { name="pd.medgene.1.0.st"; version="3.12.0"; sha256="0f5blbhlp160av6r37icjdq2lyrvip09r4yzxhfa2vlxpcm7i83m"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_medgene_1_1_st = derive2 { name="pd.medgene.1.1.st"; version="3.12.0"; sha256="1mlyv6qjcxj9q416pmjq36q0aqp5l47pkd557ayaqd7gm3ygikcq"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_medicago = derive2 { name="pd.medicago"; version="3.12.0"; sha256="1wm81jr9d04yiyg0alj197fjigcvjhz2kvh8j6jw9yaawppr0c5p"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_mg_u74a = derive2 { name="pd.mg.u74a"; version="3.12.0"; sha256="1jji6g49icsxyam9qx3mbaspg24q0hjavi0w75k99m2ckmllc47c"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_mg_u74av2 = derive2 { name="pd.mg.u74av2"; version="3.12.0"; sha256="08ym915fb26qbz2r9kzgf7znai4mc06lr59l1da0x02iaixagg32"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_mg_u74b = derive2 { name="pd.mg.u74b"; version="3.12.0"; sha256="0yav9ghdk8y12bsqam2r0p4q3r1yymfwrz1kdg0l7qfzw3mn141d"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_mg_u74bv2 = derive2 { name="pd.mg.u74bv2"; version="3.12.0"; sha256="0hxczlax8qnghp4f7d3ph2y5j3vz3k4iwl6lyw3sig51msl4q6sd"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_mg_u74c = derive2 { name="pd.mg.u74c"; version="3.12.0"; sha256="13sq8jmwlqrci87bnl313dyqzy6v141r3fqzh1frl1w66ilw9chm"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_mg_u74cv2 = derive2 { name="pd.mg.u74cv2"; version="3.12.0"; sha256="1s59s9ch1ynrmnsn5jl2b19phij4qamgcpfs3f5zhji6ip41lckj"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_mirna_1_0 = derive2 { name="pd.mirna.1.0"; version="3.12.0"; sha256="0klkmrljgvkqvdlm07c47bl0jppbzz95ikxabfi8b3ajv78k6gn1"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_mirna_2_0 = derive2 { name="pd.mirna.2.0"; version="3.12.0"; sha256="12ynrrr0jrc0kl6s4pkn9fv3r3bh6wsbrfyywb5bvxf71n75wnqy"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_mirna_3_0 = derive2 { name="pd.mirna.3.0"; version="3.12.0"; sha256="0awghps8nlisdj2anvs400dn1hwdi8iw6xlrw17qr70fznbihdsy"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_mirna_3_1 = derive2 { name="pd.mirna.3.1"; version="3.8.1"; sha256="0g8fjwhxmps1w5f7lvnv258qn2ipggs1ar4r810amqqxd0yd5ah2"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite]; };
pd_mirna_4_0 = derive2 { name="pd.mirna.4.0"; version="3.12.0"; sha256="000gqhcvlpydrpr61853q22x8gvzmlf1kp7w98lll5g1vvwkw1ad"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_moe430a = derive2 { name="pd.moe430a"; version="3.12.0"; sha256="15qys3pm8nwkr385y8mj976k16as8r65lmzykm8cy0skl071i8wb"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_moe430b = derive2 { name="pd.moe430b"; version="3.12.0"; sha256="1xas3ld65xp2g1cfkd1n4v3yvx3g0g221c3ag550k552v0alfbyd"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_moex_1_0_st_v1 = derive2 { name="pd.moex.1.0.st.v1"; version="3.14.1"; sha256="13bqzbyqngbhj7yji568cc36fq0zw0bjaglfp2n9nnhdddd8b62x"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_mogene_1_0_st_v1 = derive2 { name="pd.mogene.1.0.st.v1"; version="3.14.1"; sha256="1hmb8kf91jd9q6b4pxiwlaj6ajzmkv1c3xsszyps5cwv13pgdjix"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_mogene_1_1_st_v1 = derive2 { name="pd.mogene.1.1.st.v1"; version="3.14.1"; sha256="13s7r8g29y56qbj2xm81r5kj65y2qcp5d24bakbhfcvz60wzljqf"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_mogene_2_0_st = derive2 { name="pd.mogene.2.0.st"; version="3.14.1"; sha256="0205jk6x8r35bmma771q6km631jlppm4y72zy85bv87dv4adxci8"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_mogene_2_1_st = derive2 { name="pd.mogene.2.1.st"; version="3.14.1"; sha256="14qwcq6yyy2ayrqv8kr33chlpgw3vkgq8iwb3yycsh3x3wz40jb8"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_mouse430_2 = derive2 { name="pd.mouse430.2"; version="3.12.0"; sha256="1ix7vkjy175cxbsbs67z38dhszxjik6370j0jkfpcknms6bh1db3"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_mouse430a_2 = derive2 { name="pd.mouse430a.2"; version="3.12.0"; sha256="11ywfshqxjmwf9q4sj97zv3ylynfkswcfaqglj883p4719lhxmc3"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_mta_1_0 = derive2 { name="pd.mta.1.0"; version="3.12.0"; sha256="07vznamds5lc1xnpv7kjwcrsd5zq0ap4gk8a85xqb93fmcc9ypqi"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_mu11ksuba = derive2 { name="pd.mu11ksuba"; version="3.12.0"; sha256="10fkys7y5b5frdrjqw3x2gqzp51lgg29nw6gxz25yi5fznc3nnv2"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_mu11ksubb = derive2 { name="pd.mu11ksubb"; version="3.12.0"; sha256="08734j3asq56v090zi0gzk3ryycjm78dfbb0xqmpr7ggqys96qp9"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_nugo_hs1a520180 = derive2 { name="pd.nugo.hs1a520180"; version="3.4.0"; sha256="1qc87zrrccld1hdqmrk1if98c6jq343gzlmib40wvshmrijp3sk3"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_nugo_mm1a520177 = derive2 { name="pd.nugo.mm1a520177"; version="3.4.0"; sha256="0568zvxc11w2i32wimhmi4271jbmpn97kb0vn4ns20hfg4h63m99"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_ovigene_1_0_st = derive2 { name="pd.ovigene.1.0.st"; version="3.12.0"; sha256="0vga20rb0v4yzd28szsppbgfhmn6ky85qrjj9llvacnlj1riwxsi"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_ovigene_1_1_st = derive2 { name="pd.ovigene.1.1.st"; version="3.12.0"; sha256="1vzrizvk1dbj6ngjxv9wpbm89q5mr8dkfhr0azrczs54c92xy48r"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_pae_g1a = derive2 { name="pd.pae.g1a"; version="3.12.0"; sha256="0b0bmzfrh7lm2i5d66z24iz0d5zj3qhw89aw011yssks7sr9lq90"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_plasmodium_anopheles = derive2 { name="pd.plasmodium.anopheles"; version="3.12.0"; sha256="0njd97jkg4hxd0jyq03227i00gmy0ccxznzqmp0mjqmkkhljn7nm"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_poplar = derive2 { name="pd.poplar"; version="3.12.0"; sha256="0j5xmf5hqvbb8ylsrvih92vxn1c1lah3mkffn64fji2lgqy9vjp9"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_porcine = derive2 { name="pd.porcine"; version="3.12.0"; sha256="0zx2gz90hhalaas3sf2rh8wcapjwmnckr0gq1r8p572chwf2rb81"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_porgene_1_0_st = derive2 { name="pd.porgene.1.0.st"; version="3.12.0"; sha256="1jiajzn31yjzs942w3i4cjqlpq81rkbryk961fqb9jpwldzg1pmy"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_porgene_1_1_st = derive2 { name="pd.porgene.1.1.st"; version="3.12.0"; sha256="038zwlckx58bw4x5naspfnvk4jcyc2g9bijrh1wd4m4k5mr1i4dk"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_rabgene_1_0_st = derive2 { name="pd.rabgene.1.0.st"; version="3.12.0"; sha256="0vwxzwgwh1a0fpyqsc3mnagin67wf2jmymm9kwhcnxargpmslm7k"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_rabgene_1_1_st = derive2 { name="pd.rabgene.1.1.st"; version="3.12.0"; sha256="0qs3ka3pdlrpqh66zb62jdfm2y6p2wyn6rcp7gb5qw0s8q9h170a"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_rae230a = derive2 { name="pd.rae230a"; version="3.12.0"; sha256="14kb35pcgxh2hmpzyqp9c2xirs0p6y5dvc3h2n568jmmdd14s7j5"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_rae230b = derive2 { name="pd.rae230b"; version="3.12.0"; sha256="1db6bm6qyrzwwa2scyw6qg7qcdqq97s5vy8kv0fnqc604b1jdzzq"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_raex_1_0_st_v1 = derive2 { name="pd.raex.1.0.st.v1"; version="3.14.1"; sha256="11sxhhpb4fy7wh5k7yxwwv141xgn4r1yshx097wicpa6561ffdkc"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_ragene_1_0_st_v1 = derive2 { name="pd.ragene.1.0.st.v1"; version="3.14.1"; sha256="0afnv1f5xvdh1vdsdfi5k1zscqzpdbf4b399wib3c8dg9vslccgx"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_ragene_1_1_st_v1 = derive2 { name="pd.ragene.1.1.st.v1"; version="3.14.1"; sha256="1krygwjhqs97gyh94xfbsfd8gg285fg5bgm7rqk7wlwp8fxx8xnn"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_ragene_2_0_st = derive2 { name="pd.ragene.2.0.st"; version="3.14.1"; sha256="1rq4ivv107853pyr4jrnbms4fgfzddndibrasgql9d4msca0sbz9"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_ragene_2_1_st = derive2 { name="pd.ragene.2.1.st"; version="3.14.1"; sha256="1k9zqhnck7fgp6g0b8vmasqjvdyqshzs567rz8qabw6jk5ifssvz"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_rat230_2 = derive2 { name="pd.rat230.2"; version="3.12.0"; sha256="0ysn0qi26b3llqs312an0mlgyahf4pgmixlcq2x2n925drns34gg"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_rcngene_1_0_st = derive2 { name="pd.rcngene.1.0.st"; version="3.12.0"; sha256="0hrhvy6dbw8g1h9qgm9frpmfp45pd5h0fnbvbvz94l98a5gda7xx"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_rcngene_1_1_st = derive2 { name="pd.rcngene.1.1.st"; version="3.12.0"; sha256="1lyizr096x5idasvlivl3lb67g7n2xvblrk5zfxglaf2fgpbrgwn"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_rg_u34a = derive2 { name="pd.rg.u34a"; version="3.12.0"; sha256="18jl5w1say8zyp50iqmd6jiw8ffa7qsk6sw7h7cw0j1g90ssf4y3"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_rg_u34b = derive2 { name="pd.rg.u34b"; version="3.12.0"; sha256="19v2g9lvadvba2dy0c0qn6j8qnsds2xa4cliiq12byad21833ss0"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_rg_u34c = derive2 { name="pd.rg.u34c"; version="3.12.0"; sha256="10j3hcszx637dfd55552b75qni0yryrjk8q6p0wkd5dh6p628qrx"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_rhegene_1_0_st = derive2 { name="pd.rhegene.1.0.st"; version="3.12.0"; sha256="1mx221xvxr4ng01ibq1pc472bn5rknfv3sjsbvvfmvqgpwk6z079"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_rhegene_1_1_st = derive2 { name="pd.rhegene.1.1.st"; version="3.12.0"; sha256="0f400qal4qmkxv705n5bzz07rkrz5zgs7swk8xp4pyp161fgb171"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_rhesus = derive2 { name="pd.rhesus"; version="3.12.0"; sha256="1zrpq7ppl2gaiprvz4sm0zsxqcw2nvn6qzwi3b0cimqf7r2091dd"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_rice = derive2 { name="pd.rice"; version="3.12.0"; sha256="0fmd505vianfspb1s5glr6aacnz45dq9skbk1qwm0a9ck6a6paav"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_rjpgene_1_0_st = derive2 { name="pd.rjpgene.1.0.st"; version="3.12.0"; sha256="18qj6sdjw17553lwcb3swdx0aiv54izdzzblgl88g90ijny8rbpa"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_rjpgene_1_1_st = derive2 { name="pd.rjpgene.1.1.st"; version="3.12.0"; sha256="0i99fyf6ya13z4hfjf3f5ssvys8wjhmwk894zy0p59p7nmphigyc"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_rn_u34 = derive2 { name="pd.rn.u34"; version="3.12.0"; sha256="0ayp6r7z7p61b1lfq9dkq4ips4apgjg6igrcnvsivlfhcfcfs0wf"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_rta_1_0 = derive2 { name="pd.rta.1.0"; version="3.12.2"; sha256="0x3j1a47lxhlqnhfvh1cii11rd433x16i6xmydwq2dkvm4xgd63h"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_rusgene_1_0_st = derive2 { name="pd.rusgene.1.0.st"; version="3.12.0"; sha256="1ik28yykkpdclr5hrv8lzafzfivakwvzgz49q7bpb1g6ihwylshw"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_rusgene_1_1_st = derive2 { name="pd.rusgene.1.1.st"; version="3.12.0"; sha256="090lxwxzj39d6qzlr7c3x50zf98g8x987rv1gdn0gcas15imya6n"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_s_aureus = derive2 { name="pd.s.aureus"; version="3.12.0"; sha256="0kszw94ymxgwd3midzkpl307ch3pyr4g5qjcf4s2jsq6mrvxw666"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_soybean = derive2 { name="pd.soybean"; version="3.12.0"; sha256="0xg90m7k1x9sgmhcp1qdwhxsyr2y5g28p7a4z6gd6mng2l7cgyh0"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_soygene_1_0_st = derive2 { name="pd.soygene.1.0.st"; version="3.12.0"; sha256="1hg90pma4ikdgxpw1f5mkjcw7na4mmjbhpr06dcssjl3bvmd4yxc"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_soygene_1_1_st = derive2 { name="pd.soygene.1.1.st"; version="3.12.0"; sha256="0978vbl59afgrzy0cmwq4mhsdz5rn5d929nz90fvczm6q8g24616"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_sugar_cane = derive2 { name="pd.sugar.cane"; version="3.12.0"; sha256="09m8m99l9mrhs4gr1rb02l54k8i2wgdzz88qlbpl4xmrfnfn99h6"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_tomato = derive2 { name="pd.tomato"; version="3.12.0"; sha256="12jn8i691j3kkgwa771f4kffzfcxv19vi0waw13akch7x7cc09q7"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_u133_x3p = derive2 { name="pd.u133.x3p"; version="3.12.0"; sha256="171rv9syn90k70ivaj8c48s827c08nycpyyc2b76jy405kaqb1gl"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_vitis_vinifera = derive2 { name="pd.vitis.vinifera"; version="3.12.0"; sha256="19r2k7wx3kygw6syqph24glw0b273gpi0z0y8n4bnd3a184g6hxz"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_wheat = derive2 { name="pd.wheat"; version="3.12.0"; sha256="12n8k5ah8fncbrb2hrpi2ah29fj5rxnh5j5zk8lfwhijg2zf52ra"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_x_laevis_2 = derive2 { name="pd.x.laevis.2"; version="3.12.0"; sha256="0zf3rc8rz05hzga2g5b8khszz6sr29dlp8z1jyn94ial284d0fn3"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_x_tropicalis = derive2 { name="pd.x.tropicalis"; version="3.12.0"; sha256="1pb6jm14k0g4z9vffi3clyh7rwc11c89hinb2amczg4xfm5lqrdr"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_xenopus_laevis = derive2 { name="pd.xenopus.laevis"; version="3.12.0"; sha256="1fxd95ak5s2dw16prxdwk20hisss32nywy9dc7y72bpqrv0v309y"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_yeast_2 = derive2 { name="pd.yeast.2"; version="3.12.0"; sha256="0l6sxg79xmlb7gdxx4bx24l35jgx5y2qfp3pxzcmdnd7c7qy6z5j"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_yg_s98 = derive2 { name="pd.yg.s98"; version="3.12.0"; sha256="1krx7kkjlyc41739c349z0sdbslp19iqfai0xzy6f4jk15524vhj"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_zebgene_1_0_st = derive2 { name="pd.zebgene.1.0.st"; version="3.12.0"; sha256="1vywph8shn23k0s8jmvx34rj34y1zxgwcssjnzbipm71f2sa15hw"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_zebgene_1_1_st = derive2 { name="pd.zebgene.1.1.st"; version="3.12.0"; sha256="0xs3kx7l78dfqkasgz8n5s8qjia5qhdcnj1l8al0ivy8mwvlpyxs"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_zebrafish = derive2 { name="pd.zebrafish"; version="3.12.0"; sha256="0gg7y7w51pv0vf39qzyaf09wl3vxy222nr69zgxg7cylwxmaky7v"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_081229_hg18_promoter_medip_hx1 = derive2 { name="pd.081229.hg18.promoter.medip.hx1"; version="0.99.4"; sha256="1h4925dmw0vfsnhllg55gswq3sxfmx9rcjzifdvgs9y27399psrr"; depends=[Biostrings IRanges oligo oligoClasses]; };
pd_2006_07_18_hg18_refseq_promoter = derive2 { name="pd.2006.07.18.hg18.refseq.promoter"; version="1.8.1"; sha256="09593qkh3jqlgxlqrpl3gla3y1kcshnzlq6nf10xhlps0qdlskhx"; depends=[Biostrings IRanges oligo oligoClasses]; };
pd_2006_07_18_mm8_refseq_promoter = derive2 { name="pd.2006.07.18.mm8.refseq.promoter"; version="0.99.3"; sha256="14cm7z1y7rsk5m2zazg27wvjabckb9ifwa1g091ckwn1jfaf7aqn"; depends=[Biostrings IRanges oligo oligoClasses]; };
pd_2006_10_31_rn34_refseq_promoter = derive2 { name="pd.2006.10.31.rn34.refseq.promoter"; version="0.99.3"; sha256="0v0fa1hn5bwa15vg31dar2x0xfki0xby6qf5p1a0ivrx3pnvbsrl"; depends=[Biostrings IRanges oligo oligoClasses]; };
pd_ag = derive2 { name="pd.ag"; version="3.12.0"; sha256="0kh7ridgihqpibazpxpf9y8qiznxm4nng39701abamadxb5r6qmq"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_aragene_1_0_st = derive2 { name="pd.aragene.1.0.st"; version="3.12.0"; sha256="0255bgsqz8fflnlnxw77wvv6rky46n3pcryk9yhw7nfx0cq19v4r"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_aragene_1_1_st = derive2 { name="pd.aragene.1.1.st"; version="3.12.0"; sha256="105qfxg8p9z0bzffm6zg16c5f6nnv5hddlpcxs0kp3daddap8h5s"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_ath1_121501 = derive2 { name="pd.ath1.121501"; version="3.12.0"; sha256="0j83s6402xrggnlnqjyphy577by9w1ncvf1az4immzaixdamaaxc"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_barley1 = derive2 { name="pd.barley1"; version="3.12.0"; sha256="0mha6w2zh7gi4y7ngkh84jaff50h8l9a0q9dwc8a00m5npkpkv4g"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_bovgene_1_0_st = derive2 { name="pd.bovgene.1.0.st"; version="3.12.0"; sha256="00ys19pdc7zgprfrhmk0pzfb5q96qy0vqxi2a6g28pxwf3367b30"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_bovgene_1_1_st = derive2 { name="pd.bovgene.1.1.st"; version="3.12.0"; sha256="0npjm9rpcwj5j8sh1mdr5j1fz7dbwrqvjh2jx69fpslry69i6daq"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_bovine = derive2 { name="pd.bovine"; version="3.12.0"; sha256="1g03za5jc8lz21wpx1h2rcxdwsx7ddmmnyflz46z35ginzy41g7h"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_bsubtilis = derive2 { name="pd.bsubtilis"; version="3.12.0"; sha256="07x4dss0zp3p315q38bi7xarycav2hr44x7jb1jx4dypr0jh98mh"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_cangene_1_0_st = derive2 { name="pd.cangene.1.0.st"; version="3.12.0"; sha256="0dcwy6gnlj51hkc2gsv6fdq02vczci4z37f3iy1n8zkvz5b4yw6c"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_cangene_1_1_st = derive2 { name="pd.cangene.1.1.st"; version="3.12.0"; sha256="0pgw1424rvg3k9m3z6ffiyfj91i930dx2slqd15bnvc9hrr75094"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_canine = derive2 { name="pd.canine"; version="3.12.0"; sha256="0xpisxv7c990w44gd5g2iwfzqi3618xa3mdps69z2j4bfrcm37vq"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_canine_2 = derive2 { name="pd.canine.2"; version="3.12.0"; sha256="1dx914yyq6ry88d6fipsxsvp41pgcgllznpwsqqm2xa99y85ka5y"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_celegans = derive2 { name="pd.celegans"; version="3.12.0"; sha256="08byc5xvnbfdlikv9118k52pk37br4k8hn86xypkrmbz67fzlzpd"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_charm_hg18_example = derive2 { name="pd.charm.hg18.example"; version="0.99.4"; sha256="0nqv3h4zp83vp7q49n956920x5hdfcbw4z3hlvmqx8dixbgr1jrg"; depends=[Biostrings IRanges oligo oligoClasses]; };
pd_chicken = derive2 { name="pd.chicken"; version="3.12.0"; sha256="1alkhr297ar6iv7nrjxnlhmq3xvjzpl46mdckkbxw13w73vj6p32"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_chigene_1_0_st = derive2 { name="pd.chigene.1.0.st"; version="3.12.0"; sha256="0smfgx1brfla96ijsv3a3ljcn02kpbk6sczgp06dik3g0k54788h"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_chigene_1_1_st = derive2 { name="pd.chigene.1.1.st"; version="3.12.0"; sha256="013baf38h35fsxq0f32v00rizik8iq76jm1s8azkicv90bvw5g8k"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_chogene_2_0_st = derive2 { name="pd.chogene.2.0.st"; version="3.12.0"; sha256="0pljjz466y2aav9045qgr5hbrv7alyl3gw3br4a8knbijk6fbw15"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_chogene_2_1_st = derive2 { name="pd.chogene.2.1.st"; version="3.12.0"; sha256="0d9pslimh0w37yvvfgqljbr2z5arjn6kx0wnjhp19gcch44jvkr2"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_citrus = derive2 { name="pd.citrus"; version="3.12.0"; sha256="1792gsxdr24264n121zvspdq39ac3khaghv5j66rn2nzqds75qch"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_clariom_d_human = derive2 { name="pd.clariom.d.human"; version="3.14.1"; sha256="11q4s4q07fpkl5wpmhhjfkrp4l8i8gy1i8wc80aar84lp1261vvx"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_clariom_s_human = derive2 { name="pd.clariom.s.human"; version="3.14.1"; sha256="0a68mnwv735mi9k9qxs2vv4hnh76yg1n7jjyaw34g8m7405yjxxp"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_clariom_s_human_ht = derive2 { name="pd.clariom.s.human.ht"; version="3.14.1"; sha256="08fzm8xp6wa4x03vqb28dvlz3hiwv2q5n5h9m2np0g4g40hbhg89"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_clariom_s_mouse = derive2 { name="pd.clariom.s.mouse"; version="3.14.1"; sha256="15fc25840lnhv0rlxc98akda1gis1s4xn61ycvymjii3lgx8hwpk"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_clariom_s_mouse_ht = derive2 { name="pd.clariom.s.mouse.ht"; version="3.14.1"; sha256="1ka9mganvymml306yh196rqan333ykrmqp9dfl4xs9mz57p405kk"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_clariom_s_rat = derive2 { name="pd.clariom.s.rat"; version="3.14.1"; sha256="1bx0vipcw3vjpz59h5820yanwy7b8mxb8bkgwp3n58vm24x7l304"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_clariom_s_rat_ht = derive2 { name="pd.clariom.s.rat.ht"; version="3.14.1"; sha256="17fk4qiznh2ks7r4mzbv1gnpjca39n6rzshb5dw5n73rbnd24160"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_cotton = derive2 { name="pd.cotton"; version="3.12.0"; sha256="1h71klvndi32j7hb7cy2w6asf7lb1xhs5glxajnd30y7ksigba7l"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_cyngene_1_0_st = derive2 { name="pd.cyngene.1.0.st"; version="3.12.0"; sha256="1xkv8m346x1zrnp4bhbjk2xwfq5jkbprbh417bya8swqvcyv3zbj"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_cyngene_1_1_st = derive2 { name="pd.cyngene.1.1.st"; version="3.12.0"; sha256="1kicrk0n2lik32q9nkpfy8ydh8klsy6i5cy6m2grddv80g5hc6n4"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_cyrgene_1_0_st = derive2 { name="pd.cyrgene.1.0.st"; version="3.12.0"; sha256="1s7rrwcmaar230y90hhvrx3wxlp228j88pwdh2glap2pn3d3rlnd"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_cyrgene_1_1_st = derive2 { name="pd.cyrgene.1.1.st"; version="3.12.0"; sha256="0p7j8ygyx8f5aqyy847rfcc35hrkcavi1700af971jjrha3gllc0"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_cytogenetics_array = derive2 { name="pd.cytogenetics.array"; version="3.12.0"; sha256="0gd7q64zfxda9irdmmr92iqxlswaj5v4pklsfm96xkn8lxq34dlb"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_drogene_1_0_st = derive2 { name="pd.drogene.1.0.st"; version="3.12.0"; sha256="1zp85q3a2bayr0q5r0ij62kfypzngcz9v791xsf9n9k7nx6714fi"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_drogene_1_1_st = derive2 { name="pd.drogene.1.1.st"; version="3.12.0"; sha256="0yjxjzmcx2hh6rm15p9d36vfj77fwmd7q2kbjk8h7hbpkm72ssdf"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_drosgenome1 = derive2 { name="pd.drosgenome1"; version="3.12.0"; sha256="1cp3fs2g88yv50gkd6m769idlj7kci2g82wafn17ci65g64q0g05"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_drosophila_2 = derive2 { name="pd.drosophila.2"; version="3.12.0"; sha256="0rr3l6203nfzhz21wps7dfcifvzmbnixcr2piv5jdfh7birj23aa"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_e_coli_2 = derive2 { name="pd.e.coli.2"; version="3.12.0"; sha256="1nny0w0adg433n1i20q0jdmi5yy1anpa91dgrklpvxyxbr5902vz"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_ecoli = derive2 { name="pd.ecoli"; version="3.12.0"; sha256="0mi5i0cp5xz97pb3ic6qmwl3fp4byyddvas2npll4ngarl5wv5ag"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_ecoli_asv2 = derive2 { name="pd.ecoli.asv2"; version="3.12.0"; sha256="19pn7691cr0vakxlx0q0x3p1pfc0z8l5f14475bv2fr4djljhhma"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_elegene_1_0_st = derive2 { name="pd.elegene.1.0.st"; version="3.12.0"; sha256="1if8gwvvk9jybsrcwr8sayg1czchpnlmysa9plrm50g7r2ki7m4l"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_elegene_1_1_st = derive2 { name="pd.elegene.1.1.st"; version="3.12.0"; sha256="18v3n3ss3rl2ksvjg1jk1w0mprhhxra55znixfcd8ikqsrdfj2a2"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_equgene_1_0_st = derive2 { name="pd.equgene.1.0.st"; version="3.12.0"; sha256="01vcj6a6hm9j2fbhrz244sbig63j1jyxyg068q4hizpl9lpzaibd"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_equgene_1_1_st = derive2 { name="pd.equgene.1.1.st"; version="3.12.0"; sha256="0migyzmrgqvvnkl8w61qv26hj5kjy720q4ipamdn99z9s4r8cxrn"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_feinberg_hg18_me_hx1 = derive2 { name="pd.feinberg.hg18.me.hx1"; version="0.99.3"; sha256="1k50khs7mrp1qy9z0whm5drwv59m8zn7v0zxhv26bpvmwbrnlhfg"; depends=[Biostrings IRanges oligo oligoClasses]; };
pd_feinberg_mm8_me_hx1 = derive2 { name="pd.feinberg.mm8.me.hx1"; version="0.99.3"; sha256="1xk4rmpxjh9mwijwglzlycg7bk2zk599fk7xbnk114rj216y2jsm"; depends=[Biostrings IRanges oligo oligoClasses]; };
pd_felgene_1_0_st = derive2 { name="pd.felgene.1.0.st"; version="3.12.0"; sha256="1lf3lp3zjprfwni2nfdpkvj2j6y7hd7znmxqcgj46vccznc49hh6"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_felgene_1_1_st = derive2 { name="pd.felgene.1.1.st"; version="3.12.0"; sha256="027cgqxfgmlkx64y6nm9h36ji781fkrnnrdxblh8h4jwjd5n36rj"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_fingene_1_0_st = derive2 { name="pd.fingene.1.0.st"; version="3.12.0"; sha256="0l19h920cghw65nqbh79s1rwijqdl7k84km0iv1fgx0kxhh28xa0"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_fingene_1_1_st = derive2 { name="pd.fingene.1.1.st"; version="3.12.0"; sha256="1habbw9fvygailw73azfrvczgp6ap1az688vz8pklqq77vlqs1qz"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_genomewidesnp_5 = derive2 { name="pd.genomewidesnp.5"; version="3.14.1"; sha256="1kiqmcc07q2m7hkgqczqndk7frpwibpsi2c0ihr5av0vjrp118ak"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_genomewidesnp_6 = derive2 { name="pd.genomewidesnp.6"; version="3.14.1"; sha256="1f35nw987axlc5rsr97i7rwcy1dd8zjjj6jf4cg75y0la6rvhfw4"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_guigene_1_0_st = derive2 { name="pd.guigene.1.0.st"; version="3.12.0"; sha256="1rq5gbdm6k0shv82zy7vrqxahzffh1xikrd3a6d1ai67n129bv6f"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_guigene_1_1_st = derive2 { name="pd.guigene.1.1.st"; version="3.12.0"; sha256="0p53kkhaa4d6ib32sfnwvs363zir227dmzxp8yqma0z4kz0djdna"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_hc_g110 = derive2 { name="pd.hc.g110"; version="3.12.0"; sha256="014bb45m2pwwbz7aca6l6442188mkp5bsk46z7x18g0aa66p06hv"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_hg_focus = derive2 { name="pd.hg.focus"; version="3.12.0"; sha256="1qlkhxq76nb55c299g7x7x8wn8nx1mg4ra5b0faflsjirkh4b32s"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_hg_u133_plus_2 = derive2 { name="pd.hg.u133.plus.2"; version="3.12.0"; sha256="02ip0mf24lw818ij8xgk7cylb5q1059jwvbdd2aynqqwy2mg31h0"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_hg_u133a = derive2 { name="pd.hg.u133a"; version="3.12.0"; sha256="08bk5im2zkb1vif1i6bgfx068xcl5q5m0ac33zpscfdq4jashm7k"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_hg_u133a_2 = derive2 { name="pd.hg.u133a.2"; version="3.12.0"; sha256="1rlh62r5zmxllkc9izr6a4yr2n88flfz1rybwvi90yggc788chxy"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_hg_u133a_tag = derive2 { name="pd.hg.u133a.tag"; version="3.12.0"; sha256="1ndjzcydshh5f3cnrav91hi47bx92z6rqliiwirhx2cqk8bvz5yp"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_hg_u133b = derive2 { name="pd.hg.u133b"; version="3.12.0"; sha256="1mafh53bj6g30869pdyl59040m2crqqbfcbdpdxfpigxpqr3rb4c"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_hg_u219 = derive2 { name="pd.hg.u219"; version="3.12.0"; sha256="04kqvh5ilf83z2iwvfw7m8xsgjxy29vqayp1lgh38y48j0nn24dk"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_hg_u95a = derive2 { name="pd.hg.u95a"; version="3.12.0"; sha256="1c7d16im1xxs8v0ccn19klwv43qr6b4iw0k5hz9cl8m10jmyw49b"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_hg_u95av2 = derive2 { name="pd.hg.u95av2"; version="3.12.0"; sha256="1l3y2bhjk67jwxvxwn5rngzn5c2dzk4lk24cm74f6px845qw5sk7"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_hg_u95b = derive2 { name="pd.hg.u95b"; version="3.12.0"; sha256="0gyxh7nagya1hgh5vvwalxmhbqm9pii3l6h1mndvx2ib58msh49h"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_hg_u95c = derive2 { name="pd.hg.u95c"; version="3.12.0"; sha256="0p9yrwjw75r5dg3z0pl4yr04agjpqv9rz3in2faw3pqawdzndihq"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_hg_u95d = derive2 { name="pd.hg.u95d"; version="3.12.0"; sha256="0ygfx73b122b468zvr9lhw2vkr1aijasrazarqjqc8bjbfm4fybw"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_hg_u95e = derive2 { name="pd.hg.u95e"; version="3.12.0"; sha256="0cksi811m9fzjq5linlsarfswp3p7rdgks0js3chv91jr3v2z3a7"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_hg18_60mer_expr = derive2 { name="pd.hg18.60mer.expr"; version="3.12.0"; sha256="1lsfsgsj6gyv0q509d0axr6g2yv226zxqh8f2n1hw0kfxwl27bm8"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_ht_hg_u133_plus_pm = derive2 { name="pd.ht.hg.u133.plus.pm"; version="3.12.0"; sha256="1000f1d28yzc0kcdf380fkx3xlgla3kn4n9f2ddawzjb7igash92"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_ht_hg_u133a = derive2 { name="pd.ht.hg.u133a"; version="3.12.0"; sha256="14bnnxsn02mpyynn8bvl8c47id9l2wfakngbvpq4h5yjy689jm1c"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_ht_mg_430a = derive2 { name="pd.ht.mg.430a"; version="3.12.0"; sha256="10shsap47217p6zmb9fn86na7if965h45l2r787cisgyyn9n45mq"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_hta_2_0 = derive2 { name="pd.hta.2.0"; version="3.12.2"; sha256="004mm93wag59arzirws3cfqjv4whl8sbv558xxg7pj1ar026g4m3"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_hu6800 = derive2 { name="pd.hu6800"; version="3.12.0"; sha256="07dj0avpx53kwaab9s126pn844nal9kn3h288n1m0kihir2mrjmv"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_huex_1_0_st_v2 = derive2 { name="pd.huex.1.0.st.v2"; version="3.14.1"; sha256="1chlvjy1gvw5r8hfmkb34m3h7w2z4s5x9gsc50qbj84988k4gzga"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_hugene_1_0_st_v1 = derive2 { name="pd.hugene.1.0.st.v1"; version="3.14.1"; sha256="1ikd6h7wnyxm11j0had2wcsxfbfrwdfw9605bvvdgd63dlvdv5dk"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_hugene_1_1_st_v1 = derive2 { name="pd.hugene.1.1.st.v1"; version="3.14.1"; sha256="0bsvwr4h8j4niagnmf7d2jd714dqk4yzdhr664z6vpx6429s0rsw"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_hugene_2_0_st = derive2 { name="pd.hugene.2.0.st"; version="3.14.1"; sha256="02m5x9mrz4ca0w84ljmdpw7rnlzqbqdq0q5k4sg7izx99k5c8r59"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_hugene_2_1_st = derive2 { name="pd.hugene.2.1.st"; version="3.14.1"; sha256="07la78206cvilfm8l2fwrcyy3gpwnhn0p32ilv043ln9drka2r8h"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_maize = derive2 { name="pd.maize"; version="3.12.0"; sha256="02viqnqf02d75sbarxh1k76966yay5i6wwdx118s4c9nlr5q6aqg"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_mapping250k_nsp = derive2 { name="pd.mapping250k.nsp"; version="3.12.0"; sha256="10j8c18glhvg07zp6w84hlc6l3a3qkvcvfnq0blpjfdk3a2lndz7"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_mapping250k_sty = derive2 { name="pd.mapping250k.sty"; version="3.12.0"; sha256="1hpyijrkr6svxxhrdp6s4jjcvr44hhbrdhrzvnw5ywpykmbphryc"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_mapping50k_hind240 = derive2 { name="pd.mapping50k.hind240"; version="3.12.0"; sha256="1whpjdr4aql846cm8nzgs613pi12qdqfixhqcfv8wrqyks27kq6s"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_mapping50k_xba240 = derive2 { name="pd.mapping50k.xba240"; version="3.12.0"; sha256="1a1f3lh5ywhyjawdbj2fzban85c8jz70lfcv3pagd5piincjwxq8"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_margene_1_0_st = derive2 { name="pd.margene.1.0.st"; version="3.12.0"; sha256="1s4l57hw511cnzj197jvvzqs8ymfbf14khxcv4llg55prxnvvnfc"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_margene_1_1_st = derive2 { name="pd.margene.1.1.st"; version="3.12.0"; sha256="067jv9486win2kv563gr4vpc96lpl02zqd09cnma7ycd7l1nvj9s"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_medgene_1_0_st = derive2 { name="pd.medgene.1.0.st"; version="3.12.0"; sha256="0f5blbhlp160av6r37icjdq2lyrvip09r4yzxhfa2vlxpcm7i83m"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_medgene_1_1_st = derive2 { name="pd.medgene.1.1.st"; version="3.12.0"; sha256="1mlyv6qjcxj9q416pmjq36q0aqp5l47pkd557ayaqd7gm3ygikcq"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_medicago = derive2 { name="pd.medicago"; version="3.12.0"; sha256="1wm81jr9d04yiyg0alj197fjigcvjhz2kvh8j6jw9yaawppr0c5p"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_mg_u74a = derive2 { name="pd.mg.u74a"; version="3.12.0"; sha256="1jji6g49icsxyam9qx3mbaspg24q0hjavi0w75k99m2ckmllc47c"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_mg_u74av2 = derive2 { name="pd.mg.u74av2"; version="3.12.0"; sha256="08ym915fb26qbz2r9kzgf7znai4mc06lr59l1da0x02iaixagg32"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_mg_u74b = derive2 { name="pd.mg.u74b"; version="3.12.0"; sha256="0yav9ghdk8y12bsqam2r0p4q3r1yymfwrz1kdg0l7qfzw3mn141d"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_mg_u74bv2 = derive2 { name="pd.mg.u74bv2"; version="3.12.0"; sha256="0hxczlax8qnghp4f7d3ph2y5j3vz3k4iwl6lyw3sig51msl4q6sd"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_mg_u74c = derive2 { name="pd.mg.u74c"; version="3.12.0"; sha256="13sq8jmwlqrci87bnl313dyqzy6v141r3fqzh1frl1w66ilw9chm"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_mg_u74cv2 = derive2 { name="pd.mg.u74cv2"; version="3.12.0"; sha256="1s59s9ch1ynrmnsn5jl2b19phij4qamgcpfs3f5zhji6ip41lckj"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_mirna_1_0 = derive2 { name="pd.mirna.1.0"; version="3.12.0"; sha256="0klkmrljgvkqvdlm07c47bl0jppbzz95ikxabfi8b3ajv78k6gn1"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_mirna_2_0 = derive2 { name="pd.mirna.2.0"; version="3.12.0"; sha256="12ynrrr0jrc0kl6s4pkn9fv3r3bh6wsbrfyywb5bvxf71n75wnqy"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_mirna_3_0 = derive2 { name="pd.mirna.3.0"; version="3.12.0"; sha256="0awghps8nlisdj2anvs400dn1hwdi8iw6xlrw17qr70fznbihdsy"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_mirna_3_1 = derive2 { name="pd.mirna.3.1"; version="3.8.1"; sha256="0g8fjwhxmps1w5f7lvnv258qn2ipggs1ar4r810amqqxd0yd5ah2"; depends=[Biostrings IRanges oligo oligoClasses]; };
pd_mirna_4_0 = derive2 { name="pd.mirna.4.0"; version="3.12.0"; sha256="000gqhcvlpydrpr61853q22x8gvzmlf1kp7w98lll5g1vvwkw1ad"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_moe430a = derive2 { name="pd.moe430a"; version="3.12.0"; sha256="15qys3pm8nwkr385y8mj976k16as8r65lmzykm8cy0skl071i8wb"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_moe430b = derive2 { name="pd.moe430b"; version="3.12.0"; sha256="1xas3ld65xp2g1cfkd1n4v3yvx3g0g221c3ag550k552v0alfbyd"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_moex_1_0_st_v1 = derive2 { name="pd.moex.1.0.st.v1"; version="3.14.1"; sha256="13bqzbyqngbhj7yji568cc36fq0zw0bjaglfp2n9nnhdddd8b62x"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_mogene_1_0_st_v1 = derive2 { name="pd.mogene.1.0.st.v1"; version="3.14.1"; sha256="1hmb8kf91jd9q6b4pxiwlaj6ajzmkv1c3xsszyps5cwv13pgdjix"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_mogene_1_1_st_v1 = derive2 { name="pd.mogene.1.1.st.v1"; version="3.14.1"; sha256="13s7r8g29y56qbj2xm81r5kj65y2qcp5d24bakbhfcvz60wzljqf"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_mogene_2_0_st = derive2 { name="pd.mogene.2.0.st"; version="3.14.1"; sha256="0205jk6x8r35bmma771q6km631jlppm4y72zy85bv87dv4adxci8"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_mogene_2_1_st = derive2 { name="pd.mogene.2.1.st"; version="3.14.1"; sha256="14qwcq6yyy2ayrqv8kr33chlpgw3vkgq8iwb3yycsh3x3wz40jb8"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_mouse430_2 = derive2 { name="pd.mouse430.2"; version="3.12.0"; sha256="1ix7vkjy175cxbsbs67z38dhszxjik6370j0jkfpcknms6bh1db3"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_mouse430a_2 = derive2 { name="pd.mouse430a.2"; version="3.12.0"; sha256="11ywfshqxjmwf9q4sj97zv3ylynfkswcfaqglj883p4719lhxmc3"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_mta_1_0 = derive2 { name="pd.mta.1.0"; version="3.12.0"; sha256="07vznamds5lc1xnpv7kjwcrsd5zq0ap4gk8a85xqb93fmcc9ypqi"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_mu11ksuba = derive2 { name="pd.mu11ksuba"; version="3.12.0"; sha256="10fkys7y5b5frdrjqw3x2gqzp51lgg29nw6gxz25yi5fznc3nnv2"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_mu11ksubb = derive2 { name="pd.mu11ksubb"; version="3.12.0"; sha256="08734j3asq56v090zi0gzk3ryycjm78dfbb0xqmpr7ggqys96qp9"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_nugo_hs1a520180 = derive2 { name="pd.nugo.hs1a520180"; version="3.4.0"; sha256="1qc87zrrccld1hdqmrk1if98c6jq343gzlmib40wvshmrijp3sk3"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_nugo_mm1a520177 = derive2 { name="pd.nugo.mm1a520177"; version="3.4.0"; sha256="0568zvxc11w2i32wimhmi4271jbmpn97kb0vn4ns20hfg4h63m99"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_ovigene_1_0_st = derive2 { name="pd.ovigene.1.0.st"; version="3.12.0"; sha256="0vga20rb0v4yzd28szsppbgfhmn6ky85qrjj9llvacnlj1riwxsi"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_ovigene_1_1_st = derive2 { name="pd.ovigene.1.1.st"; version="3.12.0"; sha256="1vzrizvk1dbj6ngjxv9wpbm89q5mr8dkfhr0azrczs54c92xy48r"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_pae_g1a = derive2 { name="pd.pae.g1a"; version="3.12.0"; sha256="0b0bmzfrh7lm2i5d66z24iz0d5zj3qhw89aw011yssks7sr9lq90"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_plasmodium_anopheles = derive2 { name="pd.plasmodium.anopheles"; version="3.12.0"; sha256="0njd97jkg4hxd0jyq03227i00gmy0ccxznzqmp0mjqmkkhljn7nm"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_poplar = derive2 { name="pd.poplar"; version="3.12.0"; sha256="0j5xmf5hqvbb8ylsrvih92vxn1c1lah3mkffn64fji2lgqy9vjp9"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_porcine = derive2 { name="pd.porcine"; version="3.12.0"; sha256="0zx2gz90hhalaas3sf2rh8wcapjwmnckr0gq1r8p572chwf2rb81"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_porgene_1_0_st = derive2 { name="pd.porgene.1.0.st"; version="3.12.0"; sha256="1jiajzn31yjzs942w3i4cjqlpq81rkbryk961fqb9jpwldzg1pmy"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_porgene_1_1_st = derive2 { name="pd.porgene.1.1.st"; version="3.12.0"; sha256="038zwlckx58bw4x5naspfnvk4jcyc2g9bijrh1wd4m4k5mr1i4dk"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_rabgene_1_0_st = derive2 { name="pd.rabgene.1.0.st"; version="3.12.0"; sha256="0vwxzwgwh1a0fpyqsc3mnagin67wf2jmymm9kwhcnxargpmslm7k"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_rabgene_1_1_st = derive2 { name="pd.rabgene.1.1.st"; version="3.12.0"; sha256="0qs3ka3pdlrpqh66zb62jdfm2y6p2wyn6rcp7gb5qw0s8q9h170a"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_rae230a = derive2 { name="pd.rae230a"; version="3.12.0"; sha256="14kb35pcgxh2hmpzyqp9c2xirs0p6y5dvc3h2n568jmmdd14s7j5"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_rae230b = derive2 { name="pd.rae230b"; version="3.12.0"; sha256="1db6bm6qyrzwwa2scyw6qg7qcdqq97s5vy8kv0fnqc604b1jdzzq"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_raex_1_0_st_v1 = derive2 { name="pd.raex.1.0.st.v1"; version="3.14.1"; sha256="11sxhhpb4fy7wh5k7yxwwv141xgn4r1yshx097wicpa6561ffdkc"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_ragene_1_0_st_v1 = derive2 { name="pd.ragene.1.0.st.v1"; version="3.14.1"; sha256="0afnv1f5xvdh1vdsdfi5k1zscqzpdbf4b399wib3c8dg9vslccgx"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_ragene_1_1_st_v1 = derive2 { name="pd.ragene.1.1.st.v1"; version="3.14.1"; sha256="1krygwjhqs97gyh94xfbsfd8gg285fg5bgm7rqk7wlwp8fxx8xnn"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_ragene_2_0_st = derive2 { name="pd.ragene.2.0.st"; version="3.14.1"; sha256="1rq4ivv107853pyr4jrnbms4fgfzddndibrasgql9d4msca0sbz9"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_ragene_2_1_st = derive2 { name="pd.ragene.2.1.st"; version="3.14.1"; sha256="1k9zqhnck7fgp6g0b8vmasqjvdyqshzs567rz8qabw6jk5ifssvz"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_rat230_2 = derive2 { name="pd.rat230.2"; version="3.12.0"; sha256="0ysn0qi26b3llqs312an0mlgyahf4pgmixlcq2x2n925drns34gg"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_rcngene_1_0_st = derive2 { name="pd.rcngene.1.0.st"; version="3.12.0"; sha256="0hrhvy6dbw8g1h9qgm9frpmfp45pd5h0fnbvbvz94l98a5gda7xx"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_rcngene_1_1_st = derive2 { name="pd.rcngene.1.1.st"; version="3.12.0"; sha256="1lyizr096x5idasvlivl3lb67g7n2xvblrk5zfxglaf2fgpbrgwn"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_rg_u34a = derive2 { name="pd.rg.u34a"; version="3.12.0"; sha256="18jl5w1say8zyp50iqmd6jiw8ffa7qsk6sw7h7cw0j1g90ssf4y3"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_rg_u34b = derive2 { name="pd.rg.u34b"; version="3.12.0"; sha256="19v2g9lvadvba2dy0c0qn6j8qnsds2xa4cliiq12byad21833ss0"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_rg_u34c = derive2 { name="pd.rg.u34c"; version="3.12.0"; sha256="10j3hcszx637dfd55552b75qni0yryrjk8q6p0wkd5dh6p628qrx"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_rhegene_1_0_st = derive2 { name="pd.rhegene.1.0.st"; version="3.12.0"; sha256="1mx221xvxr4ng01ibq1pc472bn5rknfv3sjsbvvfmvqgpwk6z079"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_rhegene_1_1_st = derive2 { name="pd.rhegene.1.1.st"; version="3.12.0"; sha256="0f400qal4qmkxv705n5bzz07rkrz5zgs7swk8xp4pyp161fgb171"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_rhesus = derive2 { name="pd.rhesus"; version="3.12.0"; sha256="1zrpq7ppl2gaiprvz4sm0zsxqcw2nvn6qzwi3b0cimqf7r2091dd"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_rice = derive2 { name="pd.rice"; version="3.12.0"; sha256="0fmd505vianfspb1s5glr6aacnz45dq9skbk1qwm0a9ck6a6paav"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_rjpgene_1_0_st = derive2 { name="pd.rjpgene.1.0.st"; version="3.12.0"; sha256="18qj6sdjw17553lwcb3swdx0aiv54izdzzblgl88g90ijny8rbpa"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_rjpgene_1_1_st = derive2 { name="pd.rjpgene.1.1.st"; version="3.12.0"; sha256="0i99fyf6ya13z4hfjf3f5ssvys8wjhmwk894zy0p59p7nmphigyc"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_rn_u34 = derive2 { name="pd.rn.u34"; version="3.12.0"; sha256="0ayp6r7z7p61b1lfq9dkq4ips4apgjg6igrcnvsivlfhcfcfs0wf"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_rta_1_0 = derive2 { name="pd.rta.1.0"; version="3.12.2"; sha256="0x3j1a47lxhlqnhfvh1cii11rd433x16i6xmydwq2dkvm4xgd63h"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_rusgene_1_0_st = derive2 { name="pd.rusgene.1.0.st"; version="3.12.0"; sha256="1ik28yykkpdclr5hrv8lzafzfivakwvzgz49q7bpb1g6ihwylshw"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_rusgene_1_1_st = derive2 { name="pd.rusgene.1.1.st"; version="3.12.0"; sha256="090lxwxzj39d6qzlr7c3x50zf98g8x987rv1gdn0gcas15imya6n"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_s_aureus = derive2 { name="pd.s.aureus"; version="3.12.0"; sha256="0kszw94ymxgwd3midzkpl307ch3pyr4g5qjcf4s2jsq6mrvxw666"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_soybean = derive2 { name="pd.soybean"; version="3.12.0"; sha256="0xg90m7k1x9sgmhcp1qdwhxsyr2y5g28p7a4z6gd6mng2l7cgyh0"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_soygene_1_0_st = derive2 { name="pd.soygene.1.0.st"; version="3.12.0"; sha256="1hg90pma4ikdgxpw1f5mkjcw7na4mmjbhpr06dcssjl3bvmd4yxc"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_soygene_1_1_st = derive2 { name="pd.soygene.1.1.st"; version="3.12.0"; sha256="0978vbl59afgrzy0cmwq4mhsdz5rn5d929nz90fvczm6q8g24616"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_sugar_cane = derive2 { name="pd.sugar.cane"; version="3.12.0"; sha256="09m8m99l9mrhs4gr1rb02l54k8i2wgdzz88qlbpl4xmrfnfn99h6"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_tomato = derive2 { name="pd.tomato"; version="3.12.0"; sha256="12jn8i691j3kkgwa771f4kffzfcxv19vi0waw13akch7x7cc09q7"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_u133_x3p = derive2 { name="pd.u133.x3p"; version="3.12.0"; sha256="171rv9syn90k70ivaj8c48s827c08nycpyyc2b76jy405kaqb1gl"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_vitis_vinifera = derive2 { name="pd.vitis.vinifera"; version="3.12.0"; sha256="19r2k7wx3kygw6syqph24glw0b273gpi0z0y8n4bnd3a184g6hxz"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_wheat = derive2 { name="pd.wheat"; version="3.12.0"; sha256="12n8k5ah8fncbrb2hrpi2ah29fj5rxnh5j5zk8lfwhijg2zf52ra"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_x_laevis_2 = derive2 { name="pd.x.laevis.2"; version="3.12.0"; sha256="0zf3rc8rz05hzga2g5b8khszz6sr29dlp8z1jyn94ial284d0fn3"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_x_tropicalis = derive2 { name="pd.x.tropicalis"; version="3.12.0"; sha256="1pb6jm14k0g4z9vffi3clyh7rwc11c89hinb2amczg4xfm5lqrdr"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_xenopus_laevis = derive2 { name="pd.xenopus.laevis"; version="3.12.0"; sha256="1fxd95ak5s2dw16prxdwk20hisss32nywy9dc7y72bpqrv0v309y"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_yeast_2 = derive2 { name="pd.yeast.2"; version="3.12.0"; sha256="0l6sxg79xmlb7gdxx4bx24l35jgx5y2qfp3pxzcmdnd7c7qy6z5j"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_yg_s98 = derive2 { name="pd.yg.s98"; version="3.12.0"; sha256="1krx7kkjlyc41739c349z0sdbslp19iqfai0xzy6f4jk15524vhj"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_zebgene_1_0_st = derive2 { name="pd.zebgene.1.0.st"; version="3.12.0"; sha256="1vywph8shn23k0s8jmvx34rj34y1zxgwcssjnzbipm71f2sa15hw"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_zebgene_1_1_st = derive2 { name="pd.zebgene.1.1.st"; version="3.12.0"; sha256="0xs3kx7l78dfqkasgz8n5s8qjia5qhdcnj1l8al0ivy8mwvlpyxs"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pd_zebrafish = derive2 { name="pd.zebrafish"; version="3.12.0"; sha256="0gg7y7w51pv0vf39qzyaf09wl3vxy222nr69zgxg7cylwxmaky7v"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pedbarrayv10_db = derive2 { name="pedbarrayv10.db"; version="3.2.3"; sha256="01sn7qh5r2c2ph7gqirlzlplxscsmczf7ajffd9rsx59932f71kx"; depends=[AnnotationDbi org_Hs_eg_db]; };
pedbarrayv9_db = derive2 { name="pedbarrayv9.db"; version="3.2.3"; sha256="0x9m9m4nmdhc0j5244avmlfwljcpw0sh44l1b00cx05swi3vmjlp"; depends=[AnnotationDbi org_Hs_eg_db]; };
phastCons100way_UCSC_hg19 = derive2 { name="phastCons100way.UCSC.hg19"; version="3.7.2"; sha256="1jmc4k4zgkx5vr2plnidnd9bidlwlb0kr7mjg60cqjw7dq7jl1fa"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; };
@ -868,7 +868,7 @@ in with self; {
sugarcanecdf = derive2 { name="sugarcanecdf"; version="2.18.0"; sha256="0wghc6wr7iwkql63m3wibjjdcdpqd53z0g5rxdh553sjb0ca2n7z"; depends=[AnnotationDbi]; };
sugarcaneprobe = derive2 { name="sugarcaneprobe"; version="2.18.0"; sha256="17zrydd8xd7m61bp750xlpcak0m3zgl0mvknz9s7mv2a35kp02ih"; depends=[AnnotationDbi]; };
synaptome_data = derive2 { name="synaptome.data"; version="0.99.3"; sha256="08j7arr8lhm17ikhxxg6f8vx45ixchvh33f2wla2486dvd160pw4"; depends=[AnnotationHub]; };
synaptome_db = derive2 { name="synaptome.db"; version="0.99.8"; sha256="0g7pah9q1ci0ykm1lf3gdssfxmc33qkc5y428wdb8fzirqh5csx4"; depends=[AnnotationHub DBI dbplyr dplyr igraph Rdpack RSQLite synaptome_data]; };
synaptome_db = derive2 { name="synaptome.db"; version="0.99.8"; sha256="0g7pah9q1ci0ykm1lf3gdssfxmc33qkc5y428wdb8fzirqh5csx4"; depends=[AnnotationHub synaptome_data]; };
targetscan_Hs_eg_db = derive2 { name="targetscan.Hs.eg.db"; version="0.6.1"; sha256="1p14jyhn1d2m6kww9vsb96263g8crnrff7qgyiz46pp9ww8mvxf4"; depends=[AnnotationDbi]; };
targetscan_Mm_eg_db = derive2 { name="targetscan.Mm.eg.db"; version="0.6.1"; sha256="0ad6vxpwn9x82qcrpwcy1lwg0q3ik4vabxn01k6gwmbpvydz9cf5"; depends=[AnnotationDbi]; };
test1cdf = derive2 { name="test1cdf"; version="2.18.0"; sha256="0nmkrp4b2p09pg8ndcnfv5y7w94xah6fa5pff60dp1s2s8dcgcr4"; depends=[AnnotationDbi]; };

120
pkgs/development/r-modules/bioc-experiment-packages.nix generated
Unescape View File

@ -22,8 +22,8 @@ in with self; {
AssessORFData = derive2 { name="AssessORFData"; version="1.12.0"; sha256="0v9xlm2wxlarbhj57jacn52hlxxylyfmr1gwmkss2pzw3hjyi4v1"; depends=[DECIPHER]; };
BeadArrayUseCases = derive2 { name="BeadArrayUseCases"; version="1.32.0"; sha256="1zl54rg50v1m19fln1j1a3a22xi989sj8kk7ccjjgjhybsrvyi0r"; depends=[beadarray GEOquery limma]; };
BeadSorted_Saliva_EPIC = derive2 { name="BeadSorted.Saliva.EPIC"; version="1.2.0"; sha256="0fmjqwwnxlfpwl6ldhq92w9cxf4x4fcm349xk3jx8q8mj20zfsm1"; depends=[ExperimentHub minfi]; };
BioImageDbs = derive2 { name="BioImageDbs"; version="1.2.0"; sha256="0ldpbjdj5xhh7sxkjrxgp7b5yayfjvw5yah4dxgbrmw37hqssd3q"; depends=[animation EBImage einsum ExperimentHub filesstrings magick magrittr markdown rmarkdown]; };
BloodCancerMultiOmics2017 = derive2 { name="BloodCancerMultiOmics2017"; version="1.14.0"; sha256="1nx55qhkkjvmljby04wn0fmbgcrdmqxqgxf5h4dasw884msfha4d"; depends=[beeswarm Biobase DESeq2 devtools dplyr ggdendro ggplot2 glmnet gtable ipflasso RColorBrewer reshape2 scales SummarizedExperiment survival tibble]; };
BioImageDbs = derive2 { name="BioImageDbs"; version="1.2.0"; sha256="0ldpbjdj5xhh7sxkjrxgp7b5yayfjvw5yah4dxgbrmw37hqssd3q"; depends=[EBImage ExperimentHub]; };
BloodCancerMultiOmics2017 = derive2 { name="BloodCancerMultiOmics2017"; version="1.14.0"; sha256="1nx55qhkkjvmljby04wn0fmbgcrdmqxqgxf5h4dasw884msfha4d"; depends=[Biobase DESeq2 SummarizedExperiment]; };
CCl4 = derive2 { name="CCl4"; version="1.32.0"; sha256="1ljjj2fk4cji4aw2j8kf4rjgfjfbdyg8sfhvahvpyqgqwvmsmdx5"; depends=[Biobase limma]; };
CLL = derive2 { name="CLL"; version="1.34.0"; sha256="017kjpv5rqn6vg3d4drnxj7arjxqw1hw1lxx9p0bdzr2isahcs6g"; depends=[affy Biobase]; };
CLLmethylation = derive2 { name="CLLmethylation"; version="1.14.0"; sha256="1b3pbf3rzrl9by95gkmj3ssd1qms3hm24s1ds286jvps1y8gq97m"; depends=[ExperimentHub SummarizedExperiment]; };
@ -35,36 +35,36 @@ in with self; {
CardinalWorkflows = derive2 { name="CardinalWorkflows"; version="1.26.0"; sha256="1mk7xwxxw08wv9xnmk9szm7a90di2lp1wb35a206jr7kb3m4zx2i"; depends=[Cardinal]; };
CellMapperData = derive2 { name="CellMapperData"; version="1.20.0"; sha256="143x9j5shnqz1s816gwi7q79np38gwq0iccc9sdl8yvxhjdw0079"; depends=[CellMapper ExperimentHub]; };
ChAMPdata = derive2 { name="ChAMPdata"; version="2.26.0"; sha256="1zgikb6milp77kcfbizqc5ja94n6zx7pm77rg20j4v5nvpff7lh8"; depends=[BiocGenerics GenomicRanges]; };
ChIC_data = derive2 { name="ChIC.data"; version="1.14.0"; sha256="1la6z7rd2h8annymgvybrrw31af37pqydp5wj32bpz6fcz21bx7h"; depends=[caret genomeIntervals randomForest]; };
ChIPXpressData = derive2 { name="ChIPXpressData"; version="1.32.0"; sha256="0hbw1asyajqmshw0j897ss60yl350jl48pywnyvhkaws8bz1iina"; depends=[bigmemory]; };
ChIC_data = derive2 { name="ChIC.data"; version="1.14.0"; sha256="1la6z7rd2h8annymgvybrrw31af37pqydp5wj32bpz6fcz21bx7h"; depends=[genomeIntervals]; };
ChIPXpressData = derive2 { name="ChIPXpressData"; version="1.32.0"; sha256="0hbw1asyajqmshw0j897ss60yl350jl48pywnyvhkaws8bz1iina"; depends=[]; };
ChIPexoQualExample = derive2 { name="ChIPexoQualExample"; version="1.18.0"; sha256="1q6lg5dkvmwfjaw771x008ipzynd0jhap97rnkmcivsf84sw03nb"; depends=[]; };
ChimpHumanBrainData = derive2 { name="ChimpHumanBrainData"; version="1.32.0"; sha256="0z7hxd7nsg1p3z1min5dcdbwgz9n3p7saad0mmvj7388g48fqwc3"; depends=[affy hexbin limma qvalue statmod]; };
ChimpHumanBrainData = derive2 { name="ChimpHumanBrainData"; version="1.32.0"; sha256="0z7hxd7nsg1p3z1min5dcdbwgz9n3p7saad0mmvj7388g48fqwc3"; depends=[affy limma qvalue]; };
CluMSIDdata = derive2 { name="CluMSIDdata"; version="1.10.0"; sha256="1rxs2lyz5rz3zjl4z34n8iag76ks6gjaalh2adzs6dy9xnzbjnpm"; depends=[]; };
ConnectivityMap = derive2 { name="ConnectivityMap"; version="1.30.0"; sha256="06dbyh9d7i11rzm13i0pnpn8qhd9kia8my15vs7m26cmf9b53z4j"; depends=[]; };
CopyNeutralIMA = derive2 { name="CopyNeutralIMA"; version="1.12.0"; sha256="0kkjbw1aw0fbj5mgbxq1s811v9c5fgbiv6h5qj41cp8rbghf99lp"; depends=[ExperimentHub Rdpack]; };
CopyNeutralIMA = derive2 { name="CopyNeutralIMA"; version="1.12.0"; sha256="0kkjbw1aw0fbj5mgbxq1s811v9c5fgbiv6h5qj41cp8rbghf99lp"; depends=[ExperimentHub]; };
CopyhelpeR = derive2 { name="CopyhelpeR"; version="1.26.0"; sha256="1zsp03s6crrq1awhwqnn94lpmww7iraymjjxb7195b6cyyljf4ai"; depends=[]; };
DAPARdata = derive2 { name="DAPARdata"; version="1.24.0"; sha256="1wxgcdkz6vsicak21z9ibknqqmj7jka00rkprjav8vyw30jgrgl0"; depends=[knitr MSnbase]; };
DAPARdata = derive2 { name="DAPARdata"; version="1.24.0"; sha256="1wxgcdkz6vsicak21z9ibknqqmj7jka00rkprjav8vyw30jgrgl0"; depends=[MSnbase]; };
DExMAdata = derive2 { name="DExMAdata"; version="1.2.0"; sha256="1wlh9gsrkd6njx5g5g2q2i7mqznfmy0cd1p7r18lf8v65mn3k0bi"; depends=[Biobase]; };
DLBCL = derive2 { name="DLBCL"; version="1.34.0"; sha256="1y23bk5ywkdw57a6y4sgwz1h4jm81djxnhxw7xp9xdv1kwg6p8fj"; depends=[Biobase]; };
DMRcatedata = derive2 { name="DMRcatedata"; version="2.12.0"; sha256="0z5jlmarvakmq5vl8pyym544xsy8rds1fprvjy0s8q6iw2y3iknb"; depends=[ExperimentHub GenomicFeatures Gviz IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 plyr readxl rtracklayer]; };
DMRcatedata = derive2 { name="DMRcatedata"; version="2.12.0"; sha256="0z5jlmarvakmq5vl8pyym544xsy8rds1fprvjy0s8q6iw2y3iknb"; depends=[ExperimentHub GenomicFeatures Gviz IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 rtracklayer]; };
DREAM4 = derive2 { name="DREAM4"; version="1.30.0"; sha256="0gr0n8j4a347c5wwnpq2z2gxpvxv3swfhhlj3izc8rdyw11cf41v"; depends=[SummarizedExperiment]; };
DeSousa2013 = derive2 { name="DeSousa2013"; version="1.30.0"; sha256="1lkzzamwby4xfjj7ffnhmnxcwjaspvr7z3ijwrymd2pky46pq143"; depends=[affy AnnotationDbi Biobase cluster ConsensusClusterPlus frma frmaTools gplots hgu133plus2_db hgu133plus2frmavecs pamr rgl ROCR siggenes survival sva]; };
DmelSGI = derive2 { name="DmelSGI"; version="1.26.0"; sha256="0zii8zrqlmcl1cvdvsiikah0yg7h2ssj571j7fgh3cz95c9mdjhf"; depends=[abind gplots igraph knitr limma rhdf5 TSP]; };
DeSousa2013 = derive2 { name="DeSousa2013"; version="1.30.0"; sha256="1lkzzamwby4xfjj7ffnhmnxcwjaspvr7z3ijwrymd2pky46pq143"; depends=[affy AnnotationDbi Biobase ConsensusClusterPlus frma frmaTools hgu133plus2_db hgu133plus2frmavecs siggenes sva]; };
DmelSGI = derive2 { name="DmelSGI"; version="1.26.0"; sha256="0zii8zrqlmcl1cvdvsiikah0yg7h2ssj571j7fgh3cz95c9mdjhf"; depends=[limma rhdf5]; };
DonaPLLP2013 = derive2 { name="DonaPLLP2013"; version="1.32.0"; sha256="0dnp01n5lmssb7pxyrgx0ks9cxkb5xk6ni3n5f3l6gc6a0lrv9zz"; depends=[EBImage]; };
DropletTestFiles = derive2 { name="DropletTestFiles"; version="1.4.0"; sha256="10928x20i84f81ma6wdxkkii1l0pah2wbxvj8ady4gm04s7klvnb"; depends=[AnnotationHub ExperimentHub S4Vectors]; };
DrugVsDiseasedata = derive2 { name="DrugVsDiseasedata"; version="1.30.0"; sha256="10w2sj29bchry0w4340s48944kxy764wbp680a27jfcw0phwqw1n"; depends=[]; };
DuoClustering2018 = derive2 { name="DuoClustering2018"; version="1.12.0"; sha256="0x9nlhjfks2n834x9acmcw2hdlpqxw7ac1gqdwiphcdkzwwnpfmy"; depends=[dplyr ExperimentHub ggplot2 ggthemes magrittr mclust purrr reshape2 tidyr viridis]; };
DuoClustering2018 = derive2 { name="DuoClustering2018"; version="1.12.0"; sha256="0x9nlhjfks2n834x9acmcw2hdlpqxw7ac1gqdwiphcdkzwwnpfmy"; depends=[ExperimentHub]; };
DvDdata = derive2 { name="DvDdata"; version="1.30.0"; sha256="18as6sqfsfwgry1pm47h716c1nhcjfn82g6r9r3zs5kcvpr4phs7"; depends=[]; };
EGSEAdata = derive2 { name="EGSEAdata"; version="1.22.0"; sha256="1qzc6ir1w6s2l2kw1mb8l1sxc053f8bp5b9nllybbkpa7ialcz8y"; depends=[]; };
ELMER_data = derive2 { name="ELMER.data"; version="2.18.0"; sha256="00cnici4cnp5sw8ll9xvx1zw5qkjixyp5zffllw7qxp2q4v709z3"; depends=[GenomicRanges]; };
EatonEtAlChIPseq = derive2 { name="EatonEtAlChIPseq"; version="0.32.0"; sha256="12b40z3b4h9681zvyxkaycb26y7slgkqhjx2kwn793qaf5bhgabc"; depends=[GenomicRanges rtracklayer ShortRead]; };
FANTOM3and4CAGE = derive2 { name="FANTOM3and4CAGE"; version="1.30.0"; sha256="1y8q8clhxqyy5zdsnv084jzjaslpzlkl0502i3i7ang7g6xh0f8n"; depends=[]; };
FIs = derive2 { name="FIs"; version="1.22.0"; sha256="0zj3z7rk88s2jchrdkf6rq3ksnhlzg9h86n38kjyv6qbr6hifgkd"; depends=[]; };
FieldEffectCrc = derive2 { name="FieldEffectCrc"; version="1.4.0"; sha256="09wphzb2ycp9hlqz5qjmw4r2vwm4fgsjyvcwsvqy0d4k725gkxjd"; depends=[AnnotationHub BiocStyle DESeq2 ExperimentHub RUnit SummarizedExperiment]; };
Fletcher2013a = derive2 { name="Fletcher2013a"; version="1.30.0"; sha256="0w60h8xcp1rp4lvq87qfqbj0f497jc4w54463wnac6dbph8bsda3"; depends=[Biobase gplots limma VennDiagram]; };
Fletcher2013b = derive2 { name="Fletcher2013b"; version="1.30.0"; sha256="1fs6h0dmvigzkqn5iqfzq84zz2dv983w5mwj2bwbq3b9iclc30dg"; depends=[Fletcher2013a igraph RColorBrewer RedeR RTN]; };
FieldEffectCrc = derive2 { name="FieldEffectCrc"; version="1.4.0"; sha256="09wphzb2ycp9hlqz5qjmw4r2vwm4fgsjyvcwsvqy0d4k725gkxjd"; depends=[AnnotationHub BiocStyle DESeq2 ExperimentHub SummarizedExperiment]; };
Fletcher2013a = derive2 { name="Fletcher2013a"; version="1.30.0"; sha256="0w60h8xcp1rp4lvq87qfqbj0f497jc4w54463wnac6dbph8bsda3"; depends=[Biobase limma]; };
Fletcher2013b = derive2 { name="Fletcher2013b"; version="1.30.0"; sha256="1fs6h0dmvigzkqn5iqfzq84zz2dv983w5mwj2bwbq3b9iclc30dg"; depends=[Fletcher2013a RedeR RTN]; };
FlowSorted_Blood_450k = derive2 { name="FlowSorted.Blood.450k"; version="1.32.0"; sha256="1js5ibv4kcs5q8xwcla6pz5na7ys7f8h59s91djv8l3g8fl5v0c1"; depends=[minfi]; };
FlowSorted_Blood_EPIC = derive2 { name="FlowSorted.Blood.EPIC"; version="1.12.1"; sha256="0i8mb6cbdh5gnbp38dsk5qsyx50a1dpsnvjl46q6bx1bdfchzfh0"; depends=[ExperimentHub genefilter IlluminaHumanMethylationEPICanno_ilm10b4_hg19 minfi nlme quadprog S4Vectors SummarizedExperiment]; };
FlowSorted_Blood_EPIC = derive2 { name="FlowSorted.Blood.EPIC"; version="1.12.1"; sha256="0i8mb6cbdh5gnbp38dsk5qsyx50a1dpsnvjl46q6bx1bdfchzfh0"; depends=[ExperimentHub genefilter IlluminaHumanMethylationEPICanno_ilm10b4_hg19 minfi S4Vectors SummarizedExperiment]; };
FlowSorted_CordBlood_450k = derive2 { name="FlowSorted.CordBlood.450k"; version="1.22.0"; sha256="0kb380hq9m90jspgccl68hxxvkslxf67isb0w86x6glpsz8q0bgf"; depends=[minfi]; };
FlowSorted_CordBloodCombined_450k = derive2 { name="FlowSorted.CordBloodCombined.450k"; version="1.10.0"; sha256="0xggjhqkd7j0rfypx5armarmvkhl5a1f7fw0iwygrdg5g4804n3j"; depends=[ExperimentHub FlowSorted_Blood_EPIC IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 minfi SummarizedExperiment]; };
FlowSorted_CordBloodNorway_450k = derive2 { name="FlowSorted.CordBloodNorway.450k"; version="1.20.0"; sha256="0yqjy03lf2ihvw3r9pz5cz67rr07i8n8n7dnmzvcbvgvjb98g82p"; depends=[minfi]; };
@ -77,15 +77,15 @@ in with self; {
GSE62944 = derive2 { name="GSE62944"; version="1.22.0"; sha256="17dp87ahfch4jmw1d21s20zr28a0qxnw6ly7r7czis1fxxnc2nhi"; depends=[Biobase GEOquery]; };
GSVAdata = derive2 { name="GSVAdata"; version="1.30.0"; sha256="1yscdsjjq0dyjgx4mws97z5inxlp68gd37haza7k4q9hrdrg2qyc"; depends=[Biobase GSEABase hgu95a_db]; };
GWASdata = derive2 { name="GWASdata"; version="1.32.0"; sha256="05inid2ch6c7idyp4awvpfdw867mhnsl2k06k0bw0h8hhwnqpssk"; depends=[GWASTools]; };
GenomicDistributionsData = derive2 { name="GenomicDistributionsData"; version="1.2.0"; sha256="0kiqhqc9c46l76spc0fws9qrzhs3dyf2n8nhzq2zjbvxpbnm7hk0"; depends=[AnnotationFilter AnnotationHub BSgenome data_table ensembldb ExperimentHub GenomeInfoDb GenomicFeatures GenomicRanges]; };
GenomicDistributionsData = derive2 { name="GenomicDistributionsData"; version="1.2.0"; sha256="0kiqhqc9c46l76spc0fws9qrzhs3dyf2n8nhzq2zjbvxpbnm7hk0"; depends=[AnnotationFilter AnnotationHub BSgenome ensembldb ExperimentHub GenomeInfoDb GenomicFeatures GenomicRanges]; };
GeuvadisTranscriptExpr = derive2 { name="GeuvadisTranscriptExpr"; version="1.22.0"; sha256="0hdpwqbsj4fyg5cbg8zb0gaw1f2w8wxk6b9f3zf6lg3h1grr23p0"; depends=[]; };
HCAData = derive2 { name="HCAData"; version="1.10.0"; sha256="0l84d13sz6ai87rrv0jvssbvwb8jrrdn6k9l35phxhh78zbl0w1b"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; };
HD2013SGI = derive2 { name="HD2013SGI"; version="1.34.0"; sha256="1k7igh15bmcqr1ar3xcpiam7wypvkcazswjs97r44m9ib8xjm93y"; depends=[EBImage geneplotter gplots limma LSD RColorBrewer splots vcd]; };
HD2013SGI = derive2 { name="HD2013SGI"; version="1.34.0"; sha256="1k7igh15bmcqr1ar3xcpiam7wypvkcazswjs97r44m9ib8xjm93y"; depends=[EBImage geneplotter limma splots]; };
HDCytoData = derive2 { name="HDCytoData"; version="1.14.0"; sha256="0n1kk4g1agclpmvxy6mqzmik1d5ba3s7q6w5fsmryxbmdslaqgdr"; depends=[ExperimentHub flowCore SummarizedExperiment]; };
HEEBOdata = derive2 { name="HEEBOdata"; version="1.32.0"; sha256="1nf388mj6iw8z6kx7vwzvmkqcf2xp3srinh8af0rdj97571rqm19"; depends=[]; };
HIVcDNAvantWout03 = derive2 { name="HIVcDNAvantWout03"; version="1.34.0"; sha256="12dkiif41ailb9bmclk215s9hrl3xsh7w5m6ms799g4lr21hpm4c"; depends=[]; };
HMP16SData = derive2 { name="HMP16SData"; version="1.14.0"; sha256="12xq1vvxvv16y9szfs5qzmkpi8v8v67vm6yln3kda43x1wfc1naz"; depends=[AnnotationHub assertthat dplyr ExperimentHub kableExtra knitr magrittr readr S4Vectors stringr SummarizedExperiment tibble]; };
HMP2Data = derive2 { name="HMP2Data"; version="1.8.0"; sha256="1h4lyxva5hzvdknr7pndq49js0yz62anshaq1apdm3zcga979c2z"; depends=[AnnotationHub assertthat data_table dplyr ExperimentHub kableExtra knitr magrittr MultiAssayExperiment phyloseq readr S4Vectors SummarizedExperiment]; };
HMP16SData = derive2 { name="HMP16SData"; version="1.14.0"; sha256="12xq1vvxvv16y9szfs5qzmkpi8v8v67vm6yln3kda43x1wfc1naz"; depends=[AnnotationHub ExperimentHub S4Vectors SummarizedExperiment]; };
HMP2Data = derive2 { name="HMP2Data"; version="1.8.0"; sha256="1h4lyxva5hzvdknr7pndq49js0yz62anshaq1apdm3zcga979c2z"; depends=[AnnotationHub ExperimentHub MultiAssayExperiment phyloseq S4Vectors SummarizedExperiment]; };
HSMMSingleCell = derive2 { name="HSMMSingleCell"; version="1.14.0"; sha256="0z1iid7q5aj429npfmszhx1na4rbx4kzw47dk4153lq63zapdig9"; depends=[]; };
HarmanData = derive2 { name="HarmanData"; version="1.22.0"; sha256="0dk8anr68c3p8c88xqpvy3v46vgk2w9zdcw0ikg1593xsdhpzp1k"; depends=[]; };
HarmonizedTCGAData = derive2 { name="HarmonizedTCGAData"; version="1.16.0"; sha256="1ar9m9qkbxbg0n0acv96am6nsvy7gv85787vp3qhdvdq6cmzf39g"; depends=[ExperimentHub]; };
@ -93,9 +93,9 @@ in with self; {
HiCDataHumanIMR90 = derive2 { name="HiCDataHumanIMR90"; version="1.14.0"; sha256="1kcaf2slwrm1s6y29n1za5aadzh7hqmiyb9zq9w5k9inxqhdbmg8"; depends=[]; };
HiCDataLymphoblast = derive2 { name="HiCDataLymphoblast"; version="1.30.0"; sha256="0xqyjj64sqlh5zynqi56nr2jzc4r558bviqiybgv9zxq1m3pqddg"; depends=[]; };
HighlyReplicatedRNASeq = derive2 { name="HighlyReplicatedRNASeq"; version="1.6.0"; sha256="059sm5lwx2k3h8p2j07k7vg3p85nbgszpfp7q14c1wc350cm275c"; depends=[ExperimentHub S4Vectors SummarizedExperiment]; };
Hiiragi2013 = derive2 { name="Hiiragi2013"; version="1.30.0"; sha256="1lyb33rlaciicz6nj4w5jydgvbib9bi45z3676y78dajpvd8gsmb"; depends=[affy Biobase boot clue cluster genefilter geneplotter gplots gtools KEGGREST lattice latticeExtra MASS mouse4302_db RColorBrewer xtable]; };
Hiiragi2013 = derive2 { name="Hiiragi2013"; version="1.30.0"; sha256="1lyb33rlaciicz6nj4w5jydgvbib9bi45z3676y78dajpvd8gsmb"; depends=[affy Biobase genefilter geneplotter KEGGREST mouse4302_db]; };
HumanAffyData = derive2 { name="HumanAffyData"; version="1.20.0"; sha256="0xvy3vhdi9d944cij15k0yz3gja910kfxrrm29d9m85ga06nzzs1"; depends=[Biobase ExperimentHub]; };
IHWpaper = derive2 { name="IHWpaper"; version="1.22.0"; sha256="05hppzncnyn8ngr8iy975pmb5y0sq6m1510q8jh3dixwr5vk5zyf"; depends=[Biobase BiocGenerics BiocParallel cowplot DESeq2 dplyr fdrtool genefilter ggplot2 IHW qvalue Rcpp SummarizedExperiment]; };
IHWpaper = derive2 { name="IHWpaper"; version="1.22.0"; sha256="05hppzncnyn8ngr8iy975pmb5y0sq6m1510q8jh3dixwr5vk5zyf"; depends=[Biobase BiocGenerics BiocParallel DESeq2 genefilter IHW qvalue SummarizedExperiment]; };
ITALICSData = derive2 { name="ITALICSData"; version="2.32.0"; sha256="13psfxkv4wxlk1fhlvilpw5l4k84xc0f97j0hisdmlm9y57km62v"; depends=[]; };
Illumina450ProbeVariants_db = derive2 { name="Illumina450ProbeVariants.db"; version="1.30.0"; sha256="1g2jrqz32vlvxn5v1p9pzl99b2qjrq9cxv61zl4rip1k3q9zw7mf"; depends=[]; };
IlluminaDataTestFiles = derive2 { name="IlluminaDataTestFiles"; version="1.32.0"; sha256="19jk28hflhycp2mnic594bymqyv2bdwl88rmpmv6ggdc6z6prcll"; depends=[]; };
@ -106,7 +106,7 @@ in with self; {
KEGGdzPathwaysGEO = derive2 { name="KEGGdzPathwaysGEO"; version="1.32.0"; sha256="03zakm4hnzm5bpj1is6idpljqg1sfzldv6i6z9rkg36dahcjkgli"; depends=[Biobase BiocGenerics]; };
KOdata = derive2 { name="KOdata"; version="1.20.0"; sha256="11ar6bp6j615hcqa8w0dha1d57r8kxwjr0aikmxl3j058yrv2p6m"; depends=[]; };
LRcellTypeMarkers = derive2 { name="LRcellTypeMarkers"; version="1.2.0"; sha256="0c7nwyskm5kx2z56vr8wb1c8ll8z3z7ywi52s4d1nmhmj9dyzmb3"; depends=[ExperimentHub]; };
LiebermanAidenHiC2009 = derive2 { name="LiebermanAidenHiC2009"; version="0.32.0"; sha256="1kgydp7x3kdhh5kzwrh9fjc9zfw1jx4bbkgxc46vh1dwz8kbkbch"; depends=[IRanges KernSmooth]; };
LiebermanAidenHiC2009 = derive2 { name="LiebermanAidenHiC2009"; version="0.32.0"; sha256="1kgydp7x3kdhh5kzwrh9fjc9zfw1jx4bbkgxc46vh1dwz8kbkbch"; depends=[IRanges]; };
ListerEtAlBSseq = derive2 { name="ListerEtAlBSseq"; version="1.26.0"; sha256="0ag820shlpknc2zbqiwafisbg4hr7paqv3g26ghrvyvbkmqmj1w8"; depends=[methylPipe]; };
LungCancerACvsSCCGEO = derive2 { name="LungCancerACvsSCCGEO"; version="1.30.0"; sha256="0sfadyna4njvz1dn0z3vhvyykl864534qr200swj4cmsny52bsdh"; depends=[]; };
LungCancerLines = derive2 { name="LungCancerLines"; version="0.32.0"; sha256="1clsdv7ryk46i7640sj77xnwqqw32aa9gy9g8hvhg4sliiqmgvjw"; depends=[Rsamtools]; };
@ -122,8 +122,8 @@ in with self; {
MOFAdata = derive2 { name="MOFAdata"; version="1.10.0"; sha256="1w0bq94ivm070bna64k6z3jv8y4k5wdqffy47kgdn3ncrhcmwn6q"; depends=[]; };
MSMB = derive2 { name="MSMB"; version="1.12.0"; sha256="08d4him513am05hsrd3i430cwjqw3qpv35b84kdf87cyfvz0wl1n"; depends=[]; };
MUGAExampleData = derive2 { name="MUGAExampleData"; version="1.14.0"; sha256="04ca666vaa2kshj98s8kx651pa3lmv1v6m2s22qxv34cj1ky54jl"; depends=[]; };
MetaGxBreast = derive2 { name="MetaGxBreast"; version="1.14.0"; sha256="08cva4f3cb2mygf7i4b44xnsck75sbxfc05lxih478zcgm6n5v1w"; depends=[AnnotationHub Biobase ExperimentHub impute lattice SummarizedExperiment]; };
MetaGxOvarian = derive2 { name="MetaGxOvarian"; version="1.14.0"; sha256="1dvzmass9yg53gq26lpv6ic966agbf3y8ci7iq2q3b1ljs3x84af"; depends=[AnnotationHub Biobase ExperimentHub impute lattice SummarizedExperiment]; };
MetaGxBreast = derive2 { name="MetaGxBreast"; version="1.14.0"; sha256="08cva4f3cb2mygf7i4b44xnsck75sbxfc05lxih478zcgm6n5v1w"; depends=[AnnotationHub Biobase ExperimentHub impute SummarizedExperiment]; };
MetaGxOvarian = derive2 { name="MetaGxOvarian"; version="1.14.0"; sha256="1dvzmass9yg53gq26lpv6ic966agbf3y8ci7iq2q3b1ljs3x84af"; depends=[AnnotationHub Biobase ExperimentHub impute SummarizedExperiment]; };
MetaGxPancreas = derive2 { name="MetaGxPancreas"; version="1.14.0"; sha256="140ypxhn0ibgisa0rwdpn5pcl9zgi10n4fpbr9v2vmllsfvc74rc"; depends=[AnnotationHub ExperimentHub impute S4Vectors SummarizedExperiment]; };
MethylAidData = derive2 { name="MethylAidData"; version="1.26.0"; sha256="1hdl459vfqaz545nc1yqssxn235rf26isvg9g8zzxm4hbr4jwh5y"; depends=[MethylAid]; };
MethylSeqData = derive2 { name="MethylSeqData"; version="1.4.0"; sha256="1n347m96hx5mnfwxv82iaxpl5kqamvqgxpw2s7q7b2wywcis3fdq"; depends=[ExperimentHub GenomeInfoDb GenomicRanges HDF5Array IRanges rhdf5 S4Vectors SummarizedExperiment]; };
@ -132,12 +132,12 @@ in with self; {
NCIgraphData = derive2 { name="NCIgraphData"; version="1.30.0"; sha256="12csh0jy8kx7xv14vqsimc3f3vl6ka5j04siq9mwrl026x0jyk95"; depends=[]; };
NGScopyData = derive2 { name="NGScopyData"; version="1.14.0"; sha256="1plgsrfq8s56f40x0sb9pk2c1pmq4r3qiyjlc8d78a0sd4vn4gxa"; depends=[]; };
NanoporeRNASeq = derive2 { name="NanoporeRNASeq"; version="1.4.0"; sha256="07vc2xw3d3wjbqm17zpz7sp3jmignk5riwrfqbrpwp3bg77xffg6"; depends=[ExperimentHub]; };
NestLink = derive2 { name="NestLink"; version="1.10.0"; sha256="014knbyz67sq93gvp3ra5ajsarkb51f0v2rbjbq5qr2zr3xafyj5"; depends=[AnnotationHub Biostrings ExperimentHub gplots protViz ShortRead]; };
NestLink = derive2 { name="NestLink"; version="1.10.0"; sha256="014knbyz67sq93gvp3ra5ajsarkb51f0v2rbjbq5qr2zr3xafyj5"; depends=[AnnotationHub Biostrings ExperimentHub ShortRead]; };
Neve2006 = derive2 { name="Neve2006"; version="0.32.0"; sha256="0hhpcfwpmi3j57w26f4916lv7sj7nrjiffbmfysl5sqsjw0djn89"; depends=[annotate Biobase hgu133a_db]; };
NxtIRFdata = derive2 { name="NxtIRFdata"; version="1.0.0"; sha256="10y40srz5rq465mhqag2kqz9kpr7qymd41lyyhbc5fvglc8l37js"; depends=[BiocFileCache ExperimentHub R_utils rtracklayer]; };
NxtIRFdata = derive2 { name="NxtIRFdata"; version="1.0.0"; sha256="10y40srz5rq465mhqag2kqz9kpr7qymd41lyyhbc5fvglc8l37js"; depends=[BiocFileCache ExperimentHub rtracklayer]; };
OMICsPCAdata = derive2 { name="OMICsPCAdata"; version="1.12.0"; sha256="1l4rmfdcfafh8pyvz8bsl4rm3859c8ckzw9kv2dc82djgk0b2lcq"; depends=[MultiAssayExperiment]; };
ObMiTi = derive2 { name="ObMiTi"; version="1.2.0"; sha256="131n0q34xizcw21sjrxcf185qfpxfc8m4xypmp812151f886p405"; depends=[ExperimentHub SummarizedExperiment]; };
OnassisJavaLibs = derive2 { name="OnassisJavaLibs"; version="1.16.0"; sha256="0hw0djfc8bfk51np4x7ik8nr2dscn5wd7gvbr0564yfz2ilf8l6v"; depends=[rJava]; };
OnassisJavaLibs = derive2 { name="OnassisJavaLibs"; version="1.16.0"; sha256="0hw0djfc8bfk51np4x7ik8nr2dscn5wd7gvbr0564yfz2ilf8l6v"; depends=[]; };
PCHiCdata = derive2 { name="PCHiCdata"; version="1.22.0"; sha256="0hk7fwh456xmlfgdgp6wsdn38v1g8b18f28f0wswgxxg1hy4mhih"; depends=[Chicago]; };
PREDAsampledata = derive2 { name="PREDAsampledata"; version="0.34.0"; sha256="1gkjsh0xyn27jrxldkcgyvwpa2b2l81k96j2cls3y4dm9r39g637"; depends=[affy annotate Biobase PREDA]; };
PWMEnrich_Dmelanogaster_background = derive2 { name="PWMEnrich.Dmelanogaster.background"; version="4.28.0"; sha256="0fagxhzqr2ri1w93yr7ch1x9d55q8305cfj62gcxkzpi61j8nx1y"; depends=[PWMEnrich]; };
@ -157,7 +157,7 @@ in with self; {
RLHub = derive2 { name="RLHub"; version="1.0.0"; sha256="1i3i1dp5b04xmkgz6lf3fdk0bag23as4f42pcqncalxavgf3c3vm"; depends=[AnnotationHub ExperimentHub]; };
RMassBankData = derive2 { name="RMassBankData"; version="1.32.0"; sha256="1m268dd3wl92l3vihqijcxy1iif7qw3i3vlqhjq18qmc11i55qp2"; depends=[]; };
RNASeqRData = derive2 { name="RNASeqRData"; version="1.12.0"; sha256="0546d7p29vra6n54ffnjxz0ajb9ih90m01xx3b9p56v2s4x0wia4"; depends=[]; };
RNAinteractMAPK = derive2 { name="RNAinteractMAPK"; version="1.32.0"; sha256="0gcvhqpb0h0d0p2rr4vnh24a2flc4m502gyqb0gikk1sfd4jf6jz"; depends=[Biobase fields gdata genefilter lattice MASS RNAinteract sparseLDA]; };
RNAinteractMAPK = derive2 { name="RNAinteractMAPK"; version="1.32.0"; sha256="0gcvhqpb0h0d0p2rr4vnh24a2flc4m502gyqb0gikk1sfd4jf6jz"; depends=[Biobase genefilter RNAinteract]; };
RNAmodR_Data = derive2 { name="RNAmodR.Data"; version="1.8.0"; sha256="1zinj1m27khxmm6qwdl6zmydw505df2lsdfh4hfrnrp0yhwhp0g0"; depends=[ExperimentHub ExperimentHubData]; };
RNAseqData_HNRNPC_bam_chr14 = derive2 { name="RNAseqData.HNRNPC.bam.chr14"; version="0.32.0"; sha256="1bgz3i5x0f3940dk4nynxd4r5ji79rs81fwz9iq8br8srssdb4bg"; depends=[]; };
RRBSdata = derive2 { name="RRBSdata"; version="1.14.0"; sha256="19k7dlllf77ymn84zh22qiv1xhjv6k5i6ss9fa1w7slps17k8l1g"; depends=[BiSeq]; };
@ -171,17 +171,17 @@ in with self; {
RTCGA_mutations = derive2 { name="RTCGA.mutations"; version="20151101.24.0"; sha256="0diaxx1484nq4avmsvqs7w0dcpy36kjllklr9wx4r9zmmw098yyg"; depends=[RTCGA]; };
RTCGA_rnaseq = derive2 { name="RTCGA.rnaseq"; version="20151101.24.0"; sha256="09hr3fm8yrdyhzfrwxk59y2fdl2yg449v0na0i6im9as38zki9zb"; depends=[RTCGA]; };
RUVnormalizeData = derive2 { name="RUVnormalizeData"; version="1.14.0"; sha256="1i5hd120jc6h23vxaf5pylnji1jig9ryml1hqrrldw7wnr6iqcl5"; depends=[Biobase]; };
RcisTarget_hg19_motifDBs_cisbpOnly_500bp = derive2 { name="RcisTarget.hg19.motifDBs.cisbpOnly.500bp"; version="1.14.0"; sha256="06isc22wgwynrx9y55fkaqw6240866k400n8dfmn4pdrx3zwzhra"; depends=[data_table]; };
ReactomeGSA_data = derive2 { name="ReactomeGSA.data"; version="1.8.0"; sha256="1gpy8hbib6zldi5pwmdiqfy1pg5b4i0s6hv8x41cbryvmgx718bx"; depends=[edgeR limma ReactomeGSA Seurat]; };
RegParallel = derive2 { name="RegParallel"; version="1.12.0"; sha256="1px5j2i7gdsb2ccx556knx4dyr7wibvspgi28ja4qlsb9gn4xnin"; depends=[arm data_table doParallel foreach iterators stringr survival]; };
RforProteomics = derive2 { name="RforProteomics"; version="1.31.1"; sha256="1lb990amjy4246v3dy75bby3xbr3as017bi0zbrqda168cm8h5af"; depends=[BiocManager biocViews MSnbase R_utils]; };
RcisTarget_hg19_motifDBs_cisbpOnly_500bp = derive2 { name="RcisTarget.hg19.motifDBs.cisbpOnly.500bp"; version="1.14.0"; sha256="06isc22wgwynrx9y55fkaqw6240866k400n8dfmn4pdrx3zwzhra"; depends=[]; };
ReactomeGSA_data = derive2 { name="ReactomeGSA.data"; version="1.8.0"; sha256="1gpy8hbib6zldi5pwmdiqfy1pg5b4i0s6hv8x41cbryvmgx718bx"; depends=[edgeR limma ReactomeGSA]; };
RegParallel = derive2 { name="RegParallel"; version="1.12.0"; sha256="1px5j2i7gdsb2ccx556knx4dyr7wibvspgi28ja4qlsb9gn4xnin"; depends=[]; };
RforProteomics = derive2 { name="RforProteomics"; version="1.31.1"; sha256="1lb990amjy4246v3dy75bby3xbr3as017bi0zbrqda168cm8h5af"; depends=[biocViews MSnbase]; };
RnBeads_hg19 = derive2 { name="RnBeads.hg19"; version="1.26.0"; sha256="1r9hac14p4a0696v7n4vvxfnmsp6snvwyh0gz6h2ch7cdnp2ny0d"; depends=[GenomicRanges]; };
RnBeads_hg38 = derive2 { name="RnBeads.hg38"; version="1.26.0"; sha256="0kcqa4zhb8i5104p1qyfdp4h50x60vns4dzr663vyhkcm7y8phhg"; depends=[GenomicRanges]; };
RnBeads_mm10 = derive2 { name="RnBeads.mm10"; version="2.2.0"; sha256="06g1ys8daxjjry0zbdhilip529zamj99ing1impxnnr2kv1s3as2"; depends=[GenomicRanges]; };
RnBeads_mm9 = derive2 { name="RnBeads.mm9"; version="1.26.0"; sha256="1m7fvapwqaqfz7sjvapb4s7glcnpf35cxdg4gwi4qpjz3qq6fn95"; depends=[GenomicRanges]; };
RnBeads_rn5 = derive2 { name="RnBeads.rn5"; version="1.26.0"; sha256="1maywqb83036rjw7c6y14vcmlk0kimh54wkjvv1chqkf61a41wyh"; depends=[GenomicRanges]; };
RnaSeqSampleSizeData = derive2 { name="RnaSeqSampleSizeData"; version="1.26.0"; sha256="029qlllnvi63jkxj8fhqzp02sl5cay2n046a1ghnwrbjf8ax3qby"; depends=[edgeR]; };
SBGNview_data = derive2 { name="SBGNview.data"; version="1.8.0"; sha256="1xcicqsyvvgb3bwxzw6pw0xvrhrvswjp5piqmkdqv1d747mci58b"; depends=[bookdown knitr rmarkdown]; };
SBGNview_data = derive2 { name="SBGNview.data"; version="1.8.0"; sha256="1xcicqsyvvgb3bwxzw6pw0xvrhrvswjp5piqmkdqv1d747mci58b"; depends=[]; };
SCATEData = derive2 { name="SCATEData"; version="1.4.0"; sha256="1zaysac53dv4q2w93bdmmnva5p4h63bp752h3kgik91p77i8vg95"; depends=[ExperimentHub GenomicAlignments GenomicRanges]; };
SCLCBam = derive2 { name="SCLCBam"; version="1.26.0"; sha256="087ypaaqb4a44jk6fqnh8z4i45384zr6riv22z1kwcx3fpybc5zx"; depends=[]; };
SNAData = derive2 { name="SNAData"; version="1.40.0"; sha256="1ng54ccaarbsfqak4gvx680rfpskp90ravif0n0iminqmfm596sg"; depends=[graph]; };
@ -191,13 +191,13 @@ in with self; {
SVM2CRMdata = derive2 { name="SVM2CRMdata"; version="1.26.0"; sha256="0k6zznv9ai9ib011yq48zzpdk8qik5ms9388dcw4k90zirnmd4ii"; depends=[]; };
SimBenchData = derive2 { name="SimBenchData"; version="1.2.0"; sha256="01k5p00lrczk7xww7xkj880aj5x14sgwbvgl7gmqrzqw69x0d3ns"; depends=[ExperimentHub S4Vectors]; };
Single_mTEC_Transcriptomes = derive2 { name="Single.mTEC.Transcriptomes"; version="1.22.0"; sha256="0vgf7pl31vdmn5wbm7jhbbhv46bi3p1fb1cgzi2lnzg1m5y117wd"; depends=[]; };
SingleCellMultiModal = derive2 { name="SingleCellMultiModal"; version="1.6.0"; sha256="1gbf52bs87ypszhj7a6v7ggbqznbfj77p0xy17aygnqlpg1rls43"; depends=[AnnotationHub BiocFileCache BiocGenerics ExperimentHub HDF5Array Matrix MultiAssayExperiment S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment]; };
SingleCellMultiModal = derive2 { name="SingleCellMultiModal"; version="1.6.0"; sha256="1gbf52bs87ypszhj7a6v7ggbqznbfj77p0xy17aygnqlpg1rls43"; depends=[AnnotationHub BiocFileCache BiocGenerics ExperimentHub HDF5Array MultiAssayExperiment S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment]; };
SingleMoleculeFootprintingData = derive2 { name="SingleMoleculeFootprintingData"; version="1.2.0"; sha256="1knajc7bjiylbkdz97vcs0m7m9m2yvzp6pilglkxnrrqjc9r2d86"; depends=[ExperimentHub]; };
SomatiCAData = derive2 { name="SomatiCAData"; version="1.32.0"; sha256="0x5ygnc4bgqqwap1919hw69hmy3d3r5svyssihrhqp9a3jp55yag"; depends=[]; };
SomaticCancerAlterations = derive2 { name="SomaticCancerAlterations"; version="1.30.0"; sha256="0wwphjr94kavb45xhsjfhqcyjisanl511in4kn3din1m291xsl3m"; depends=[GenomicRanges IRanges S4Vectors]; };
SpikeIn = derive2 { name="SpikeIn"; version="1.36.0"; sha256="1z04cqp2p445zdnhkblyy4lk0flmq1x1ir32sqn1kds1nkmv0ws8"; depends=[affy]; };
SpikeInSubset = derive2 { name="SpikeInSubset"; version="1.34.0"; sha256="0adzr1072rr2zbwmhzg6h3m00w4dxpz9c3f24hj6gf6w9gzk79a7"; depends=[affy Biobase]; };
TBX20BamSubset = derive2 { name="TBX20BamSubset"; version="1.30.0"; sha256="1y1dgnqa3f80x8j8pw02dd4zb40q86v1qp7102lkhnppvb3b3f2j"; depends=[Rsamtools xtable]; };
TBX20BamSubset = derive2 { name="TBX20BamSubset"; version="1.30.0"; sha256="1y1dgnqa3f80x8j8pw02dd4zb40q86v1qp7102lkhnppvb3b3f2j"; depends=[Rsamtools]; };
TCGAMethylation450k = derive2 { name="TCGAMethylation450k"; version="1.30.0"; sha256="1qymmnvpic4nz93079r5kxb9yi7y6qcjq39rz5mmcp15q73lpfqk"; depends=[]; };
TCGAWorkflowData = derive2 { name="TCGAWorkflowData"; version="1.18.0"; sha256="17iq6g93bxzzgsv255ab68crcr5haim57fxx6shjy8ww2ab6522k"; depends=[SummarizedExperiment]; };
TCGAbiolinksGUI_data = derive2 { name="TCGAbiolinksGUI.data"; version="1.14.0"; sha256="08zmlvycq3jz1zy0715x9f21nf3465c51k7w2jq12sfbap36pmjm"; depends=[]; };
@ -207,16 +207,16 @@ in with self; {
TENxBrainData = derive2 { name="TENxBrainData"; version="1.14.0"; sha256="1fhhsrariacvd63ngvs348q6cvp4kmjfjzsl2k3a4r8ci3y4snzc"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; };
TENxPBMCData = derive2 { name="TENxPBMCData"; version="1.12.0"; sha256="0gb6ji84zk2shz4y10mcccvamz7840qm21nsw8pczq90g0x2vz1g"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; };
TENxVisiumData = derive2 { name="TENxVisiumData"; version="1.2.0"; sha256="175mnl0axzhvfp49g4hwplcr0p064yzh77wn30z8m738ckkwz5gr"; depends=[ExperimentHub SpatialExperiment]; };
TMExplorer = derive2 { name="TMExplorer"; version="1.4.0"; sha256="0l5rs379mg5nwqbfv1kpgqbwjbym82g0wq3354fcvp6w91bskspz"; depends=[BiocFileCache Matrix SingleCellExperiment]; };
TMExplorer = derive2 { name="TMExplorer"; version="1.4.0"; sha256="0l5rs379mg5nwqbfv1kpgqbwjbym82g0wq3354fcvp6w91bskspz"; depends=[BiocFileCache SingleCellExperiment]; };
TabulaMurisData = derive2 { name="TabulaMurisData"; version="1.12.0"; sha256="1ncv97h21w9qy7gqz25wsayq6y01siaxc5cll4c8r0nsh3hprnjc"; depends=[ExperimentHub]; };
TabulaMurisSenisData = derive2 { name="TabulaMurisSenisData"; version="1.0.0"; sha256="1apwhg418s3vmqk28smj2ac54dzbayvn9bd8pn5gnqijcziy6j6h"; depends=[AnnotationHub ExperimentHub gdata HDF5Array SingleCellExperiment SummarizedExperiment]; };
TabulaMurisSenisData = derive2 { name="TabulaMurisSenisData"; version="1.0.0"; sha256="1apwhg418s3vmqk28smj2ac54dzbayvn9bd8pn5gnqijcziy6j6h"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment SummarizedExperiment]; };
TargetScoreData = derive2 { name="TargetScoreData"; version="1.30.0"; sha256="11j7nc0k86qk3jgqhiarwawlzih86s8xdsiwllsnrp8i3ddwfq8x"; depends=[]; };
TargetSearchData = derive2 { name="TargetSearchData"; version="1.32.0"; sha256="11gs90jl3z95b2pp2v2lgfibk0hmkkp6waf9pnhw68kp38iv1n7w"; depends=[]; };
TimerQuant = derive2 { name="TimerQuant"; version="1.24.0"; sha256="1phyxfdljbx6k7l2lmrzs764yx1y9w4hj415zzpqs3i8skf83pf2"; depends=[deSolve dplyr ggplot2 gridExtra locfit shiny]; };
TimerQuant = derive2 { name="TimerQuant"; version="1.24.0"; sha256="1phyxfdljbx6k7l2lmrzs764yx1y9w4hj415zzpqs3i8skf83pf2"; depends=[]; };
VariantToolsData = derive2 { name="VariantToolsData"; version="1.18.0"; sha256="0xa3bwjf255ff65fphxn0mn39j1f6f5k8snpbwy0qrrcv6a5ksky"; depends=[BiocGenerics GenomicRanges VariantAnnotation]; };
WES_1KG_WUGSC = derive2 { name="WES.1KG.WUGSC"; version="1.26.0"; sha256="0857mgrscvdi4r6bzijb411vjh9nprgi0vda3b14rh2kz5py8y5k"; depends=[]; };
WGSmapp = derive2 { name="WGSmapp"; version="1.6.0"; sha256="0vzpvhz4s68jdjpli6pl18y804wdcc1xb8d1lz0lywg2shf2vfhf"; depends=[GenomicRanges]; };
XhybCasneuf = derive2 { name="XhybCasneuf"; version="1.32.0"; sha256="1xj5sdqvp9zfgk5hk2zqr5jjfym6zv7h94j1kir11pbxy9h4j2i9"; depends=[affy ath1121501cdf RColorBrewer tinesath1cdf]; };
XhybCasneuf = derive2 { name="XhybCasneuf"; version="1.32.0"; sha256="1xj5sdqvp9zfgk5hk2zqr5jjfym6zv7h94j1kir11pbxy9h4j2i9"; depends=[affy ath1121501cdf tinesath1cdf]; };
adductData = derive2 { name="adductData"; version="1.10.0"; sha256="0bp74p06gskwn2xl1srpnmsq27ajsrlynkzw6fcmvwwjcrzljmnj"; depends=[AnnotationHub ExperimentHub]; };
affycompData = derive2 { name="affycompData"; version="1.32.0"; sha256="1f4c57clh0xzsj3vvx7bv0hdjgj7fj4zfzxbm0cavmp6khvgd6ng"; depends=[affycomp Biobase]; };
affydata = derive2 { name="affydata"; version="1.42.0"; sha256="184zrqgl0hnzqshjjpzqb41nry6c7sxqkj4lxn8217444pqq8i94"; depends=[affy]; };
@ -229,7 +229,7 @@ in with self; {
benchmarkfdrData2019 = derive2 { name="benchmarkfdrData2019"; version="1.8.0"; sha256="1434pf9jrgjpvx1rd50zi8010rzd3kdlj7ryvp1q6ivw9r90mq6j"; depends=[ExperimentHub SummarizedExperiment]; };
beta7 = derive2 { name="beta7"; version="1.32.0"; sha256="0m2mq9slb1yqjhk5y4sqclhm92j7q0a1rkh290j73ql2x90acb5y"; depends=[marray]; };
biotmleData = derive2 { name="biotmleData"; version="1.18.0"; sha256="1hsabj556jsiq3g466fqwq4lfy01bh3riv0c9jms43gd0l414ic8"; depends=[]; };
biscuiteerData = derive2 { name="biscuiteerData"; version="1.8.0"; sha256="19j4g8fvfmfb3x6bpbx5cs3ad8pv263ga8p9rj266s5dla5yi8jz"; depends=[AnnotationHub curl ExperimentHub]; };
biscuiteerData = derive2 { name="biscuiteerData"; version="1.8.0"; sha256="19j4g8fvfmfb3x6bpbx5cs3ad8pv263ga8p9rj266s5dla5yi8jz"; depends=[AnnotationHub ExperimentHub]; };
bladderbatch = derive2 { name="bladderbatch"; version="1.32.0"; sha256="1lrx5qx8kj0dzpcqm8091px8zj3snkbjlpwdckyhvf10iyw4mjxy"; depends=[Biobase]; };
blimaTestingData = derive2 { name="blimaTestingData"; version="1.14.0"; sha256="1dx475m12nb010c56h7iadb6g2b1xgvd6q0mqjkp3sqsfgv27cfn"; depends=[]; };
bodymapRat = derive2 { name="bodymapRat"; version="1.10.0"; sha256="1zn08w81pyyd19hrgylzpif7rw7n7qny1bccl566sqc80dqhavgb"; depends=[ExperimentHub SummarizedExperiment]; };
@ -250,7 +250,7 @@ in with self; {
ccdata = derive2 { name="ccdata"; version="1.20.0"; sha256="0s6n8dv91p3g44j7nhsfjyqzbga4akfsr574abdwmkwyz13b37qd"; depends=[]; };
celarefData = derive2 { name="celarefData"; version="1.12.0"; sha256="0vhkhb2i1n62shg608q8k6frraynmxghz1kp961v7fca4lww1i96"; depends=[]; };
celldex = derive2 { name="celldex"; version="1.4.0"; sha256="04w60fx3s3wlirmr65nsz6d7ig48j9fzimdr8kbdqv1g80ivdcq1"; depends=[AnnotationDbi AnnotationHub DelayedArray DelayedMatrixStats ExperimentHub S4Vectors SummarizedExperiment]; };
chipenrich_data = derive2 { name="chipenrich.data"; version="2.18.0"; sha256="1x400szark90jzfnr1fp7z956vp0bbnhgc5njzmigqw213fb0647"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicRanges IRanges readr rtracklayer S4Vectors]; };
chipenrich_data = derive2 { name="chipenrich.data"; version="2.18.0"; sha256="1x400szark90jzfnr1fp7z956vp0bbnhgc5njzmigqw213fb0647"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicRanges IRanges rtracklayer S4Vectors]; };
chipseqDBData = derive2 { name="chipseqDBData"; version="1.10.0"; sha256="1lv02yn8v3l4h0775dqsbbadv6iv7ln7i58x042avlww2rf3lkp5"; depends=[AnnotationHub ExperimentHub Rsamtools S4Vectors]; };
chromstaRData = derive2 { name="chromstaRData"; version="1.20.0"; sha256="0bpbnsfs44pdwjsgf3vmkgsq0mz46rx13j1d6g69z4yv00m5kp7j"; depends=[]; };
clustifyrdatahub = derive2 { name="clustifyrdatahub"; version="1.4.0"; sha256="1wm0mlzs3k88zqjhz9wg846ngffgvs72s2ixmp3kwpdm4gk1jx3y"; depends=[ExperimentHub]; };
@ -260,18 +260,18 @@ in with self; {
curatedAdipoChIP = derive2 { name="curatedAdipoChIP"; version="1.10.0"; sha256="1mwjw585vn8malbanidvk30gwd5057358ak3669akikxf6wna9cj"; depends=[ExperimentHub SummarizedExperiment]; };
curatedAdipoRNA = derive2 { name="curatedAdipoRNA"; version="1.10.0"; sha256="0k3hhcfs484hxm0jixgs4q29jq9vk90s2zdz2m23inmn8cxv6d5b"; depends=[SummarizedExperiment]; };
curatedBladderData = derive2 { name="curatedBladderData"; version="1.30.0"; sha256="0jv7aflam2gfzj8snf7dly26zq9c6gj764zb6fk0z9lb8wk4arxg"; depends=[affy]; };
curatedBreastData = derive2 { name="curatedBreastData"; version="2.22.0"; sha256="0jnjhlw3b27521jmbbq4m0lq388m1g09lfhqfri3hbvrayk19pn6"; depends=[Biobase BiocStyle ggplot2 impute XML]; };
curatedCRCData = derive2 { name="curatedCRCData"; version="2.26.0"; sha256="0gpkfff5k4mh96d6q5s2iwba7pfkp5wjl3nxhg3sm0vryrj0w8s0"; depends=[BiocGenerics nlme]; };
curatedMetagenomicData = derive2 { name="curatedMetagenomicData"; version="3.2.0"; sha256="1k4fjpmgs7dfvf7bkzyb9lmzmw7jj8ayc2y3nbskap6l1xl5qpxb"; depends=[AnnotationHub dplyr ExperimentHub magrittr mia purrr rlang S4Vectors stringr SummarizedExperiment tibble tidyr tidyselect TreeSummarizedExperiment]; };
curatedBreastData = derive2 { name="curatedBreastData"; version="2.22.0"; sha256="0jnjhlw3b27521jmbbq4m0lq388m1g09lfhqfri3hbvrayk19pn6"; depends=[Biobase BiocStyle impute]; };
curatedCRCData = derive2 { name="curatedCRCData"; version="2.26.0"; sha256="0gpkfff5k4mh96d6q5s2iwba7pfkp5wjl3nxhg3sm0vryrj0w8s0"; depends=[BiocGenerics]; };
curatedMetagenomicData = derive2 { name="curatedMetagenomicData"; version="3.2.0"; sha256="1k4fjpmgs7dfvf7bkzyb9lmzmw7jj8ayc2y3nbskap6l1xl5qpxb"; depends=[AnnotationHub ExperimentHub mia S4Vectors SummarizedExperiment TreeSummarizedExperiment]; };
curatedOvarianData = derive2 { name="curatedOvarianData"; version="1.32.0"; sha256="171m6j6wq5w7n68xzjf34shqhw1360cmzfh5q2al71jsh8lrw77x"; depends=[affy BiocGenerics]; };
curatedTBData = derive2 { name="curatedTBData"; version="1.0.0"; sha256="0cbs8pkr4zlpvdmq1zsxyh47lkbgpf0ppbv8y653arryb4knficl"; depends=[AnnotationHub ExperimentHub MultiAssayExperiment rlang]; };
curatedTBData = derive2 { name="curatedTBData"; version="1.0.0"; sha256="0cbs8pkr4zlpvdmq1zsxyh47lkbgpf0ppbv8y653arryb4knficl"; depends=[AnnotationHub ExperimentHub MultiAssayExperiment]; };
curatedTCGAData = derive2 { name="curatedTCGAData"; version="1.16.0"; sha256="0d7id11liv55xj0n8gk0587p6kjwm5k22jgwf1f107y81zigpi3n"; depends=[AnnotationHub ExperimentHub HDF5Array MultiAssayExperiment S4Vectors SummarizedExperiment]; };
davidTiling = derive2 { name="davidTiling"; version="1.34.0"; sha256="1az64q1vcgp2rwlpv79bhz3xjjki07n5x6jc12i5ladxlxb1zrwy"; depends=[Biobase GO_db tilingArray]; };
depmap = derive2 { name="depmap"; version="1.8.0"; sha256="17zwkbndf1fa8sb5lc500l4s7f8x0zq6si8yb8i28bpk5hvdz737"; depends=[AnnotationHub dplyr ExperimentHub]; };
depmap = derive2 { name="depmap"; version="1.8.0"; sha256="17zwkbndf1fa8sb5lc500l4s7f8x0zq6si8yb8i28bpk5hvdz737"; depends=[AnnotationHub ExperimentHub]; };
derfinderData = derive2 { name="derfinderData"; version="2.12.0"; sha256="1i8k7yjkkqv7j2qxh46377acgw2zlf7az4fh0v4gl80c1iplzq2j"; depends=[]; };
diffloopdata = derive2 { name="diffloopdata"; version="1.22.0"; sha256="1nhyjbbdspw11kms4hh4bmwa9m91zl1lwxjp20q6nqdb7vr57ra5"; depends=[]; };
diggitdata = derive2 { name="diggitdata"; version="1.26.0"; sha256="04q8n0fap7hasfxnhc0gc4118jsch01j2j614j6dx19frc1g96v4"; depends=[Biobase viper]; };
dorothea = derive2 { name="dorothea"; version="1.6.0"; sha256="1a5nyxbjrd61mbbrpms8whh4v3qjch21xqf98ahaj5ikpsr1fs7i"; depends=[bcellViper dplyr magrittr viper]; };
dorothea = derive2 { name="dorothea"; version="1.6.0"; sha256="1a5nyxbjrd61mbbrpms8whh4v3qjch21xqf98ahaj5ikpsr1fs7i"; depends=[bcellViper viper]; };
dressCheck = derive2 { name="dressCheck"; version="0.32.0"; sha256="12s2cd770n229wxa3gnpyxw299xk8s774wfi9mx0h4r65cvj900d"; depends=[Biobase]; };
dyebiasexamples = derive2 { name="dyebiasexamples"; version="1.34.0"; sha256="0cp1l68y79qppnzzs11n57f0hasbyla5prc9nr52iqng4fb0y8ww"; depends=[GEOquery marray]; };
easierData = derive2 { name="easierData"; version="1.0.0"; sha256="05hcnfh3nhkg14fpgzk254472xhxahni4kfmf7xj4pa13yzkvjnl"; depends=[AnnotationHub ExperimentHub SummarizedExperiment]; };
@ -288,7 +288,7 @@ in with self; {
flowPloidyData = derive2 { name="flowPloidyData"; version="1.20.0"; sha256="0jqmaazhn23cqbfz5f55aj1acr3z1vw2a6bhfk85n6npcqvbj1s9"; depends=[]; };
flowWorkspaceData = derive2 { name="flowWorkspaceData"; version="3.6.0"; sha256="0jawkzfrq489mrf535biqrlp1xmg1aawbx71n05kxh06i5nyw3zq"; depends=[]; };
frmaExampleData = derive2 { name="frmaExampleData"; version="1.30.0"; sha256="1dyh4qbw5l99052c7xhrjpn8xzzzqx870gxw1f3xnz7kmvymsqgb"; depends=[]; };
furrowSeg = derive2 { name="furrowSeg"; version="1.22.0"; sha256="05nn6jlj3z30qz06rdrac1v558176kpgxhaqijmg3amwzinkjlg7"; depends=[abind dplyr EBImage locfit tiff]; };
furrowSeg = derive2 { name="furrowSeg"; version="1.22.0"; sha256="05nn6jlj3z30qz06rdrac1v558176kpgxhaqijmg3amwzinkjlg7"; depends=[EBImage]; };
gageData = derive2 { name="gageData"; version="2.32.0"; sha256="18kj4c5p9gw0kvx9r71hfb2hn1xyxjny0j3z5shcy762xs17jxb7"; depends=[]; };
gaschYHS = derive2 { name="gaschYHS"; version="1.32.0"; sha256="0x1vn8mk04j5aslhaxnfa17iqhz68m4yxjs9a5vmbry10lzz1r97"; depends=[Biobase]; };
gatingMLData = derive2 { name="gatingMLData"; version="2.34.0"; sha256="1qmmaqqa61gmw98ph3mz7pmhbah775bndy436i1vnbyv54r2qi8k"; depends=[]; };
@ -330,7 +330,7 @@ in with self; {
miRNATarget = derive2 { name="miRNATarget"; version="1.32.0"; sha256="067bcdyhqrrym2sz854dw2qpmabfp1yf2iryhpkbfk9b8966b9yv"; depends=[Biobase]; };
miRcompData = derive2 { name="miRcompData"; version="1.24.0"; sha256="1gb8zx82dlfqhdl8yy1p0l756qs2lldnlm05xk6r4k46wz937jw9"; depends=[]; };
microRNAome = derive2 { name="microRNAome"; version="1.16.0"; sha256="1y6g5i8x2ylxrr6k80kg92a04isfr7c3w7zi01chf1fpsdxjimjn"; depends=[SummarizedExperiment]; };
microbiomeDataSets = derive2 { name="microbiomeDataSets"; version="1.2.0"; sha256="0pi15jk2k2nzcylh45mklz7id556ljqhx1fdcc04hrgw7n96c1ks"; depends=[ape BiocGenerics Biostrings ExperimentHub MultiAssayExperiment SummarizedExperiment TreeSummarizedExperiment]; };
microbiomeDataSets = derive2 { name="microbiomeDataSets"; version="1.2.0"; sha256="0pi15jk2k2nzcylh45mklz7id556ljqhx1fdcc04hrgw7n96c1ks"; depends=[BiocGenerics Biostrings ExperimentHub MultiAssayExperiment SummarizedExperiment TreeSummarizedExperiment]; };
minfiData = derive2 { name="minfiData"; version="0.40.0"; sha256="12lnn43l6mdk4rbcihd68hsz0rqgi005zwih5wqx1jp400g2kd07"; depends=[IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest minfi]; };
minfiDataEPIC = derive2 { name="minfiDataEPIC"; version="1.20.0"; sha256="0jc1mqw2ah95ai10xl8m62gs38c88qzrsx4lkcg1w03dqxky08qj"; depends=[IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest minfi]; };
minionSummaryData = derive2 { name="minionSummaryData"; version="1.24.0"; sha256="1ldwmxhs7sg6k30prsa88hkxwmb3sf8ik2zv83j020cqxjlwr6xv"; depends=[]; };
@ -340,7 +340,7 @@ in with self; {
msd16s = derive2 { name="msd16s"; version="1.14.0"; sha256="02mn8pjxqfy9rjc6rdac3in2iqmy7x6lkb8cag3zhmx6z98b8lxv"; depends=[Biobase metagenomeSeq]; };
msdata = derive2 { name="msdata"; version="0.34.0"; sha256="066ss2cvqmisxw1sslz04a0izq2vmpgvlg00v8wynv7pmq1783w2"; depends=[]; };
msigdb = derive2 { name="msigdb"; version="1.2.0"; sha256="1i9c4h52z64kma1ms7qcvp3w6xrn2cmcrm389837znscghcm60mx"; depends=[AnnotationDbi AnnotationHub ExperimentHub GSEABase org_Hs_eg_db org_Mm_eg_db]; };
msqc1 = derive2 { name="msqc1"; version="1.22.0"; sha256="0r0aj6x67ys5bxxfwc8cybkqnfl226ypgz5zhs6d701y8py7c3mv"; depends=[lattice]; };
msqc1 = derive2 { name="msqc1"; version="1.22.0"; sha256="0r0aj6x67ys5bxxfwc8cybkqnfl226ypgz5zhs6d701y8py7c3mv"; depends=[]; };
mtbls2 = derive2 { name="mtbls2"; version="1.24.0"; sha256="1kbpnxizzz42inj6g1s4xgq2wmk53zkvpvgdkwvljxzavr8znjl6"; depends=[]; };
muscData = derive2 { name="muscData"; version="1.8.0"; sha256="1m263nykpxzl6xqvx8s7iadmfn4ammfvh2h0cdrk01vw4m4llywd"; depends=[ExperimentHub SingleCellExperiment]; };
mvoutData = derive2 { name="mvoutData"; version="1.30.0"; sha256="059y5iqbgav4b0sxdqjq6a0nx4c9wnxny1amz5bda4s3ragvn7vh"; depends=[affy Biobase lumi]; };
@ -353,7 +353,7 @@ in with self; {
pasilla = derive2 { name="pasilla"; version="1.22.0"; sha256="0jgphpwm5z1rzhcqbpzrhyfynjg5p8lb46m2l9ffmxbwi899i0qh"; depends=[]; };
pasillaBamSubset = derive2 { name="pasillaBamSubset"; version="0.32.0"; sha256="1zxbcf83hsfzkps5ms46nj3g5ym532zncwlfna95kmw12xc9a90w"; depends=[]; };
pcxnData = derive2 { name="pcxnData"; version="2.16.0"; sha256="05nnpjnci3q2g1rmmmv8vjyzjylx4pzi42p71b95ff2apifbhk95"; depends=[]; };
pd_atdschip_tiling = derive2 { name="pd.atdschip.tiling"; version="0.32.0"; sha256="0bg7r5101xayyqbb1m4xcnq5iz63h3jl7v8v2s2ma07yaxix9w7x"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pd_atdschip_tiling = derive2 { name="pd.atdschip.tiling"; version="0.32.0"; sha256="0bg7r5101xayyqbb1m4xcnq5iz63h3jl7v8v2s2ma07yaxix9w7x"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; };
pepDat = derive2 { name="pepDat"; version="1.14.0"; sha256="1l6cp2w22pywvdkzra8ifwxf4s5v47hpf5ljp97k34wpsrh7cws4"; depends=[GenomicRanges]; };
plasFIA = derive2 { name="plasFIA"; version="1.22.0"; sha256="118fch06a609gp799dsym3k14zspxdxzd9ck5jjpf8b3pf17ly9y"; depends=[proFIA]; };
plotgardenerData = derive2 { name="plotgardenerData"; version="1.0.0"; sha256="0fad3v1gh0g595zk1vabns8jfhb9h1qnlqynrjq50hrgg1vdljgw"; depends=[]; };
@ -365,16 +365,16 @@ in with self; {
prostateCancerStockholm = derive2 { name="prostateCancerStockholm"; version="1.22.0"; sha256="0jr248zkbsqp8sidnf3yl8f53aqrp5di574ymgmqxmqdxc72pd67"; depends=[Biobase]; };
prostateCancerTaylor = derive2 { name="prostateCancerTaylor"; version="1.22.0"; sha256="0s1jk2wj514rn43l13rw8k3y3phsiif3dw5pn84cqs47zwkb7q7q"; depends=[Biobase]; };
prostateCancerVarambally = derive2 { name="prostateCancerVarambally"; version="1.22.0"; sha256="1jj3qa795q75s46brq67hr8vkpzdxgc05wi3i564y4k8d08gl0xl"; depends=[Biobase]; };
ptairData = derive2 { name="ptairData"; version="1.2.0"; sha256="13dqn720svg74q7fn6wvplcsdjpjlr8dj83ncqlsvddmyscyyclk"; depends=[rhdf5 signal]; };
ptairData = derive2 { name="ptairData"; version="1.2.0"; sha256="13dqn720svg74q7fn6wvplcsdjpjlr8dj83ncqlsvddmyscyyclk"; depends=[rhdf5]; };
pumadata = derive2 { name="pumadata"; version="2.30.0"; sha256="184xrjjm4smgrfj18w63qq1p7f0dmn2qvf3y3mym1s6r2z00r73s"; depends=[Biobase oligo puma]; };
pwrEWAS_data = derive2 { name="pwrEWAS.data"; version="1.8.0"; sha256="15zkxp1wpnxi0g15x9ym1syfg3q5scvmpxq3zj5cs37z60y9gb7d"; depends=[ExperimentHub]; };
qPLEXdata = derive2 { name="qPLEXdata"; version="1.12.0"; sha256="0dw6dicy7srlx5nxla76k338ki4aan54h3rnrqmyd7h3pp5svx09"; depends=[dplyr knitr MSnbase qPLEXanalyzer]; };
qPLEXdata = derive2 { name="qPLEXdata"; version="1.12.0"; sha256="0dw6dicy7srlx5nxla76k338ki4aan54h3rnrqmyd7h3pp5svx09"; depends=[MSnbase qPLEXanalyzer]; };
rRDPData = derive2 { name="rRDPData"; version="1.14.0"; sha256="096wasx4xap4jvcziqr175qq84kz0yzy6v2ji618r6cflnlfrd8p"; depends=[rRDP]; };
rcellminerData = derive2 { name="rcellminerData"; version="2.16.0"; sha256="1yany4zkk72kxrqzy27azxfnl6mkrf02yby1gizixn04mqzbjl1a"; depends=[Biobase]; };
restfulSEData = derive2 { name="restfulSEData"; version="1.16.0"; sha256="1bx41xwxnvx6712wsy5qljji2w3wiybvddkxic8xc9l2hrcmfhrz"; depends=[ExperimentHub SummarizedExperiment]; };
rheumaticConditionWOLLBOLD = derive2 { name="rheumaticConditionWOLLBOLD"; version="1.32.0"; sha256="0k2klx4rpyzcq346c3ak2lf6w47zkhnhiqn4rs70xnxnsbjn2ca5"; depends=[]; };
sampleClassifierData = derive2 { name="sampleClassifierData"; version="1.18.0"; sha256="12k7xhd2axmcpmv970xbhx5r9b0jdmkxxqm01a0v2jfx3imzz9jb"; depends=[SummarizedExperiment]; };
scATAC_Explorer = derive2 { name="scATAC.Explorer"; version="1.0.0"; sha256="16qscpjbbphrd1qfp85r9bw8v98866kzsf20fk270m2aq378y4i8"; depends=[BiocFileCache data_table Matrix S4Vectors SingleCellExperiment]; };
scATAC_Explorer = derive2 { name="scATAC.Explorer"; version="1.0.0"; sha256="16qscpjbbphrd1qfp85r9bw8v98866kzsf20fk270m2aq378y4i8"; depends=[BiocFileCache S4Vectors SingleCellExperiment]; };
scRNAseq = derive2 { name="scRNAseq"; version="2.8.0"; sha256="19caas79yarf3vww60bnn92v9ns82pawqbbw78kmy0x94hvsfdbk"; depends=[AnnotationDbi AnnotationHub BiocGenerics ensembldb ExperimentHub GenomicFeatures GenomicRanges S4Vectors SingleCellExperiment SummarizedExperiment]; };
scTHI_data = derive2 { name="scTHI.data"; version="1.6.0"; sha256="0n794kicpylibqgi4z9mwdgmk5ni3yhqzaqcdr2mij844s079fx4"; depends=[]; };
scanMiRData = derive2 { name="scanMiRData"; version="1.0.0"; sha256="0z6nl4w4r8m1mara0zyzlg7xx6y9fa8psvln0695wvpxzmps4y9h"; depends=[scanMiR]; };
@ -383,27 +383,27 @@ in with self; {
seqCNA_annot = derive2 { name="seqCNA.annot"; version="1.30.0"; sha256="04m6azyswyglh2lvikk6xhnn2449p6vj2zhny1lpcg7j4x8msdvm"; depends=[]; };
seqc = derive2 { name="seqc"; version="1.28.0"; sha256="1iz35c3k8cr1080yi6cmjr42hwigfwjz5ydn36n6yy41n1s988za"; depends=[Biobase]; };
serumStimulation = derive2 { name="serumStimulation"; version="1.30.0"; sha256="1zn0q5zxdzfkkgv8n3q5nyxsj6yrv3chhyivggzxrjk942anl4rg"; depends=[]; };
sesameData = derive2 { name="sesameData"; version="1.12.0"; sha256="1kr5vn4rw1ncnvbxx3j2amqqzsddzwy79qlpzqxp8jmzydqfamxj"; depends=[AnnotationHub curl ExperimentHub rmarkdown]; };
sesameData = derive2 { name="sesameData"; version="1.12.0"; sha256="1kr5vn4rw1ncnvbxx3j2amqqzsddzwy79qlpzqxp8jmzydqfamxj"; depends=[AnnotationHub ExperimentHub]; };
seventyGeneData = derive2 { name="seventyGeneData"; version="1.30.0"; sha256="0ckip0hw3xwf48iqschdwrlx4yr5wnyf7iycxfbrc2cz7zsbgp5n"; depends=[]; };
shinyMethylData = derive2 { name="shinyMethylData"; version="1.14.0"; sha256="0hb1ahn1c613iz6ds39jgpa6aw0wgl0pv5f9gai1fp1zbqc44r6p"; depends=[]; };
signatureSearchData = derive2 { name="signatureSearchData"; version="1.8.0"; sha256="13xfdg3si14zmrbib691301hhxxj3d3xyfkab5l4skspzgpd64cx"; depends=[affy Biobase dplyr ExperimentHub limma magrittr R_utils rhdf5 signatureSearch]; };
signatureSearchData = derive2 { name="signatureSearchData"; version="1.8.0"; sha256="13xfdg3si14zmrbib691301hhxxj3d3xyfkab5l4skspzgpd64cx"; depends=[affy Biobase ExperimentHub limma rhdf5 signatureSearch]; };
simpIntLists = derive2 { name="simpIntLists"; version="1.30.0"; sha256="0q2lqfhsjncdj42hblrh389j2m47x26nn58s31s1448pddhrp7z1"; depends=[]; };
spatialDmelxsim = derive2 { name="spatialDmelxsim"; version="1.0.0"; sha256="1h5crcjrzapj5j31285ana48g3b2iscxwlzxxdx9i03jsl39dlp8"; depends=[ExperimentHub SummarizedExperiment]; };
spatialLIBD = derive2 { name="spatialLIBD"; version="1.6.0"; sha256="0c1ayv3mf31smmqfys85xjpadkavjixw545gkalibvxrkxmq0qb3"; depends=[AnnotationHub benchmarkme BiocFileCache cowplot DT ExperimentHub fields ggplot2 golem IRanges jsonlite plotly png Polychrome RColorBrewer S4Vectors scater sessioninfo shiny shinyWidgets SingleCellExperiment SpatialExperiment SummarizedExperiment tibble viridisLite]; };
spatialLIBD = derive2 { name="spatialLIBD"; version="1.6.0"; sha256="0c1ayv3mf31smmqfys85xjpadkavjixw545gkalibvxrkxmq0qb3"; depends=[AnnotationHub BiocFileCache ExperimentHub IRanges S4Vectors scater SingleCellExperiment SpatialExperiment SummarizedExperiment]; };
spqnData = derive2 { name="spqnData"; version="1.6.0"; sha256="0dwmgwz88g8fzpa2nl2zs4y32wrlf4ca142d8siak14wl089nm4y"; depends=[SummarizedExperiment]; };
stemHypoxia = derive2 { name="stemHypoxia"; version="1.30.0"; sha256="05jly60gg5xr9511jlymzbpjysapfz2qq81rxhdz7cjbjkkgvykr"; depends=[]; };
stjudem = derive2 { name="stjudem"; version="1.34.0"; sha256="005wy7b8naaph9krsdw234sk8fprccclnj7y4rfrs2f3lbrw4b2g"; depends=[]; };
synapterdata = derive2 { name="synapterdata"; version="1.31.0"; sha256="03bdx8a1hrnlbcfq92d2yrjydw978pifbgr257r55p15khkigl86"; depends=[]; };
systemPipeRdata = derive2 { name="systemPipeRdata"; version="1.22.0"; sha256="09p653i4drnfjvx3kd20f4jg7lw1254f44qknl3ghiqppa6rz9g9"; depends=[BiocGenerics GenomicFeatures GenomicRanges IRanges jsonlite remotes Rsamtools rtracklayer ShortRead]; };
systemPipeRdata = derive2 { name="systemPipeRdata"; version="1.22.0"; sha256="09p653i4drnfjvx3kd20f4jg7lw1254f44qknl3ghiqppa6rz9g9"; depends=[BiocGenerics GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer ShortRead]; };
tartare = derive2 { name="tartare"; version="1.8.0"; sha256="0zaiy4wkikrcx2lc8mcsikpfp8yz3l17bd1z1l0g9r41ixysq105"; depends=[AnnotationHub ExperimentHub]; };
tcgaWGBSData_hg19 = derive2 { name="tcgaWGBSData.hg19"; version="1.12.0"; sha256="1kmh4iyh2h7vc1mlwb3sridn4nwkqdschz5md5dk53mxkn2wxcmi"; depends=[bsseq ExperimentHub knitr]; };
tcgaWGBSData_hg19 = derive2 { name="tcgaWGBSData.hg19"; version="1.12.0"; sha256="1kmh4iyh2h7vc1mlwb3sridn4nwkqdschz5md5dk53mxkn2wxcmi"; depends=[bsseq ExperimentHub]; };
timecoursedata = derive2 { name="timecoursedata"; version="1.4.0"; sha256="007dh5wmjd6s7jr0p8af6irm25my20j1ifxhm6rxscgijskqb410"; depends=[SummarizedExperiment]; };
tinesath1cdf = derive2 { name="tinesath1cdf"; version="1.32.0"; sha256="1pa1mzb03p8wfrihcpvqhp2zpzhf0hg5amwmivr4926x26ivkbsj"; depends=[]; };
tinesath1probe = derive2 { name="tinesath1probe"; version="1.32.0"; sha256="00bhw370f4i866w08fia3acp7whxz7p167y444jaavll29bhqgsy"; depends=[AnnotationDbi]; };
tissueTreg = derive2 { name="tissueTreg"; version="1.14.0"; sha256="0ldgq526izrvazrsbwhnvq6yqc2zr6d9mvq87jvsmwskxswyrpva"; depends=[]; };
tofsimsData = derive2 { name="tofsimsData"; version="1.22.0"; sha256="1iqp70zr2i3p0pvzblsqqy7v949n5ankxp133zyhm88wscqxjwiv"; depends=[]; };
topdownrdata = derive2 { name="topdownrdata"; version="1.16.0"; sha256="1s4yskh6jy49dipbb7ixrb4dbl5d8a33d1kb5j99vgimj8rq9gsy"; depends=[topdownr]; };
tuberculosis = derive2 { name="tuberculosis"; version="1.0.0"; sha256="1bnimnik486r6g6mx0frigg5iwm3x4zbwsrsfq59s05mzix7silm"; depends=[AnnotationHub dplyr ExperimentHub magrittr purrr rlang S4Vectors stringr SummarizedExperiment tibble tidyr]; };
tuberculosis = derive2 { name="tuberculosis"; version="1.0.0"; sha256="1bnimnik486r6g6mx0frigg5iwm3x4zbwsrsfq59s05mzix7silm"; depends=[AnnotationHub ExperimentHub S4Vectors SummarizedExperiment]; };
tweeDEseqCountData = derive2 { name="tweeDEseqCountData"; version="1.32.0"; sha256="1zi2ic6yhwh3swp473xy540wg74g98bs4s820yzga9aqbcp7g5h2"; depends=[Biobase]; };
tximportData = derive2 { name="tximportData"; version="1.22.0"; sha256="0fyy487874h2aqb5lvjndn8fgs708m3lv4am42xcjpky98b3zl71"; depends=[]; };
vulcandata = derive2 { name="vulcandata"; version="1.16.0"; sha256="0apb9s4hm3a2hqwa81l58havrdwx2b8wl52xcb62b398f9mblhgb"; depends=[]; };

44
pkgs/development/r-modules/bioc-packages.nix generated
Unescape View File

@ -114,8 +114,8 @@ in with self; {
BiocNeighbors = derive2 { name="BiocNeighbors"; version="1.12.0"; sha256="04in8l6j7frgm0a5dzphazfhn9cm8w775z5yir712jxa37mh1agr"; depends=[BiocParallel Matrix Rcpp RcppHNSW S4Vectors]; };
BiocOncoTK = derive2 { name="BiocOncoTK"; version="1.14.0"; sha256="1h5s6wbc5n5x5d28rynxpcmaklxdhf72g9gg9fy8cg77niipvxd9"; depends=[bigrquery car ComplexHeatmap curatedTCGAData DBI dplyr DT GenomicFeatures GenomicRanges ggplot2 ggpubr graph httr IRanges magrittr plyr Rgraphviz rjson S4Vectors scales shiny SummarizedExperiment]; };
BiocParallel = derive2 { name="BiocParallel"; version="1.28.0"; sha256="0jqgbpjppwinzw100qhc42kc95znq6xanl26bi8m9cq7yggbpra6"; depends=[BH futile_logger snow]; };
BiocPkgTools = derive2 { name="BiocPkgTools"; version="1.12.0"; sha256="13m6h35938407ajj7fakl50g4p2wsvinkg0r2mwl1zwq88735arg"; depends=[BiocFileCache BiocManager biocViews dplyr DT gh graph htmltools htmlwidgets httr igraph jsonlite magrittr RBGL readr rlang rvest stringr tibble tidyr tidyselect xml2]; };
BiocSet = derive2 { name="BiocSet"; version="1.8.0"; sha256="0ysm68gcalg3d91jx6vmdzra01vc6kvzqnvz557g3rnm0wkx12q6"; depends=[AnnotationDbi BiocIO dplyr KEGGREST ontologyIndex plyr rlang S4Vectors tibble tidyr]; };
BiocPkgTools = derive2 { name="BiocPkgTools"; version="1.12.2"; sha256="1yz2sgx4xrnw22k3d6q6hkj213bnbb4hbr5ymxnmjnsz551s75ny"; depends=[BiocFileCache BiocManager biocViews dplyr DT gh graph htmltools htmlwidgets httr igraph jsonlite magrittr RBGL readr rlang rvest stringr tibble tidyr tidyselect xml2]; };
BiocSet = derive2 { name="BiocSet"; version="1.8.1"; sha256="1x5ar9byr85iap2x6y66j31fi17wr31awx1gl3z01sckp0dldx6w"; depends=[AnnotationDbi BiocIO dplyr KEGGREST ontologyIndex plyr rlang S4Vectors tibble tidyr]; };
BiocSingular = derive2 { name="BiocSingular"; version="1.10.0"; sha256="0dkh6a23qymjcynppmpp3k1mzpfadv8dqyz410pxkqsxig4ldd4n"; depends=[beachmat BiocGenerics BiocParallel DelayedArray irlba Matrix Rcpp rsvd S4Vectors ScaledMatrix]; };
BiocSklearn = derive2 { name="BiocSklearn"; version="1.16.0"; sha256="0iscm2h4i7b50h4bfrrcafai14aq5wa5987awpzyk285gwifp6aw"; depends=[basilisk knitr Rcpp reticulate SummarizedExperiment]; };
BiocStyle = derive2 { name="BiocStyle"; version="2.22.0"; sha256="0xx6xr01sb5wig94515zxgw24r9fv0g962ajy87741civhq32lbd"; depends=[BiocManager bookdown knitr rmarkdown yaml]; };
@ -134,7 +134,7 @@ in with self; {
CAEN = derive2 { name="CAEN"; version="1.2.0"; sha256="0jxi9bgbb3dnhcgm93qx611bnl23s7lk9msmxqbnlyhjprmbsqnz"; depends=[PoiClaClu SummarizedExperiment]; };
CAFE = derive2 { name="CAFE"; version="1.30.0"; sha256="130jidd1jxlgkv3sq8bgqyrn51dhb9yf67dlnjhf7xbvlyvx179g"; depends=[affy annotate Biobase biovizBase GenomicRanges ggbio ggplot2 gridExtra IRanges]; };
CAGEfightR = derive2 { name="CAGEfightR"; version="1.14.0"; sha256="08v16d9al8l7a31sncwpi79i7770v5gr2bf2q7i07xxdsf496yr9"; depends=[assertthat BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicInteractions GenomicRanges Gviz InteractionSet IRanges Matrix pryr rtracklayer S4Vectors SummarizedExperiment]; };
CAGEr = derive2 { name="CAGEr"; version="2.0.0"; sha256="0a116v3hxrfjm8fcq27vs260wygw0hbj4f3s063za8l45fdpamv6"; depends=[BiocGenerics BiocParallel BSgenome data_table DelayedArray DelayedMatrixStats formula_tools GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gtools IRanges KernSmooth memoise MultiAssayExperiment plyr reshape2 Rsamtools rtracklayer S4Vectors som stringdist stringi SummarizedExperiment vegan VGAM]; };
CAGEr = derive2 { name="CAGEr"; version="2.0.1"; sha256="1mhdiiy3mffd0ivmcc7fs28h98c4qhsd62c9xf3w0pv5diy1xv9f"; depends=[BiocGenerics BiocParallel BSgenome data_table DelayedArray DelayedMatrixStats formula_tools GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gtools IRanges KernSmooth memoise MultiAssayExperiment plyr reshape2 Rsamtools rtracklayer S4Vectors som stringdist stringi SummarizedExperiment vegan VGAM]; };
CAMERA = derive2 { name="CAMERA"; version="1.50.0"; sha256="1mgdmzlbj8yhk6jmnqaw4xmss77v7csdajd240kiswvm1f317z3h"; depends=[Biobase graph Hmisc igraph RBGL xcms]; };
CARNIVAL = derive2 { name="CARNIVAL"; version="2.4.0"; sha256="10wbdjripgndfaqx2aysmqhc9v8i94db8bf0bb89csmvmnia68c6"; depends=[dplyr igraph lpSolve readr rjson rmarkdown stringr]; };
CATALYST = derive2 { name="CATALYST"; version="1.18.0"; sha256="15lah45lf16zh1ankbpjvz8zp38lldvq074nmvb99rhhqys2gbgi"; depends=[circlize ComplexHeatmap ConsensusClusterPlus cowplot data_table dplyr drc flowCore FlowSOM ggplot2 ggrepel ggridges gridExtra magrittr Matrix matrixStats nnls purrr RColorBrewer reshape2 Rtsne S4Vectors scales scater SingleCellExperiment SummarizedExperiment]; };
@ -332,7 +332,7 @@ in with self; {
FELLA = derive2 { name="FELLA"; version="1.14.0"; sha256="0xs4qky42nz80qmbnb5b925ks76xxpa5mymvrcllzzhbyax2dddc"; depends=[igraph KEGGREST Matrix plyr]; };
FGNet = derive2 { name="FGNet"; version="3.28.0"; sha256="0mz728i1ylbhwxb41xghrl7aaz5a3s3iaysi0hl7jjmiixvscp90"; depends=[hwriter igraph plotrix png R_utils RColorBrewer reshape2 XML]; };
FISHalyseR = derive2 { name="FISHalyseR"; version="1.28.0"; sha256="0z9wlk98xicc6bcyx11q25sxrfdiiwcx32bvp3l3xi5r99alwwlp"; depends=[abind EBImage]; };
FLAMES = derive2 { name="FLAMES"; version="0.99.31"; sha256="098fg6jky98y0wlrrinmjb7r4yf9s40c2kwp0xrn0z5paczj4y56"; depends=[basilisk dplyr magrittr Rcpp reticulate Rhtslib Rsamtools S4Vectors scater scuttle SingleCellExperiment SummarizedExperiment tidyr zlibbioc]; };
FLAMES = derive2 { name="FLAMES"; version="1.0.2"; sha256="025q9sfj3q5hgqncf61kfg90wlv7ddkqcnv1qgvsxy7cca7x1dyi"; depends=[basilisk dplyr magrittr Rcpp reticulate Rhtslib Rsamtools S4Vectors scater scuttle SingleCellExperiment SummarizedExperiment tidyr zlibbioc]; };
FRASER = derive2 { name="FRASER"; version="1.6.0"; sha256="07xj7fznqmsc71j1s6h7g8jq8cg93hys3q20f7lja6l9032rl5rx"; depends=[AnnotationDbi BBmisc Biobase BiocGenerics BiocParallel biomaRt BSgenome cowplot data_table DelayedArray DelayedMatrixStats extraDistr generics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 ggrepel HDF5Array IRanges matrixStats OUTRIDER pcaMethods pheatmap plotly PRROC R_utils RColorBrewer Rcpp RcppArmadillo rhdf5 Rsamtools Rsubread S4Vectors SummarizedExperiment tibble VGAM]; };
FRGEpistasis = derive2 { name="FRGEpistasis"; version="1.30.0"; sha256="1b69g11klf2av1an1h50vz6bkpkjg4v1a2mi9lj0bmwsi7kb7j32"; depends=[fda MASS]; };
FScanR = derive2 { name="FScanR"; version="1.4.0"; sha256="1xsbf8vxck17s1shs2gxls02wzm3qr9wy8iwr8zqk9gsm5niax4z"; depends=[]; };
@ -670,7 +670,7 @@ in with self; {
OMICsPCA = derive2 { name="OMICsPCA"; version="1.12.0"; sha256="0d5hplm94k7hz6lap31jsb5pdh8lb7xl9i0swznm5vzrxrjdifyd"; depends=[cluster clValid corrplot cowplot data_table factoextra FactoMineR fpc GenomeInfoDb ggplot2 HelloRanges IRanges kableExtra magick MASS MultiAssayExperiment NbClust OMICsPCAdata pdftools PerformanceAnalytics reshape2 rgl rmarkdown rtracklayer tidyr]; };
OPWeight = derive2 { name="OPWeight"; version="1.16.0"; sha256="1zkbhb70aam3g1arfb8bc8z4c4bd1qyr1zidz6srx1n25pkhp4ii"; depends=[MASS qvalue tibble]; };
ORFhunteR = derive2 { name="ORFhunteR"; version="1.2.0"; sha256="0jkpq3hiv6n5c4hy3khs59020p98ig91w78ab37jam3sibykr0c6"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg38 data_table Peptides randomForest Rcpp rtracklayer stringr xfun]; };
ORFik = derive2 { name="ORFik"; version="1.13.14"; sha256="0m7hf3a7bwz5yawl364c68g31q0syi03vlga0hhgy2hm9f3g0ips"; depends=[AnnotationDbi BiocGenerics BiocParallel biomartr Biostrings BSgenome cowplot data_table DESeq2 fst GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GGally ggplot2 gridExtra httr IRanges R_utils Rcpp Rsamtools rtracklayer S4Vectors SummarizedExperiment xml2]; };
ORFik = derive2 { name="ORFik"; version="1.14.5"; sha256="11whi2irq947hpz1w9d9spl8dm8m022x9brcr82n9hx71bkxzh4v"; depends=[AnnotationDbi BiocGenerics BiocParallel biomartr Biostrings BSgenome cowplot data_table DESeq2 fst GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GGally ggplot2 gridExtra httr IRanges R_utils Rcpp Rsamtools rtracklayer S4Vectors SummarizedExperiment xml2]; };
OSAT = derive2 { name="OSAT"; version="1.42.0"; sha256="1ibhrrlfjjils0w6n586s5ws0ybv7ija2p2f0jq3m3m9l324iyx9"; depends=[]; };
OTUbase = derive2 { name="OTUbase"; version="1.44.0"; sha256="18wmllkc3h8x9ihrg0lzk4jvxjwrccl1jr37inkdmzv4aq5b7ygs"; depends=[Biobase Biostrings IRanges S4Vectors ShortRead vegan]; };
OUTRIDER = derive2 { name="OUTRIDER"; version="1.12.0"; sha256="0ygsk0q1n8h02y4x3ccajkyyryn8gq0dz397l3jryb248g564a4h"; depends=[BBmisc BiocGenerics BiocParallel data_table DESeq2 generics GenomicFeatures GenomicRanges ggplot2 heatmaply IRanges matrixStats pcaMethods pheatmap plotly plyr PRROC RColorBrewer Rcpp RcppArmadillo reshape2 S4Vectors scales SummarizedExperiment]; };
@ -858,14 +858,14 @@ in with self; {
Rsubread = derive2 { name="Rsubread"; version="2.8.0"; sha256="09kd7vl2z9k82ppfzy679hs7d00c60z3w3n6a8wq4z3k3f4glc3s"; depends=[Matrix]; };
Rtpca = derive2 { name="Rtpca"; version="1.4.0"; sha256="05i25sfgdqsnw9ky0p25aix8qrzkirmcl5vvpqrv8bwvs335glm4"; depends=[Biobase dplyr fdrtool ggplot2 pROC tibble tidyr]; };
Rtreemix = derive2 { name="Rtreemix"; version="1.56.0"; sha256="15kr8y8w059bxhl9x7j7qg01b55jsxfmfzgdyxk6l40i3l4i0wh1"; depends=[Biobase graph Hmisc]; };
S4Vectors = derive2 { name="S4Vectors"; version="0.32.0"; sha256="1zm1xlqrq1f9xa81j3ij2p78g3aywq7izsk3h40z94fjggahvc09"; depends=[BiocGenerics]; };
S4Vectors = derive2 { name="S4Vectors"; version="0.32.1"; sha256="0if4mmg0wmfh92khpqkn8ydm7rha0wraa0vnjn6fak3rzlz77ncd"; depends=[BiocGenerics]; };
SAIGEgds = derive2 { name="SAIGEgds"; version="1.8.0"; sha256="08jhqpi13kg69nfl425m6rvgyvzfspfylgnzkk1v6v0kaz5876f2"; depends=[gdsfmt Rcpp RcppArmadillo RcppParallel SeqArray SPAtest]; };
SANTA = derive2 { name="SANTA"; version="2.30.0"; sha256="0w0rd0vmjvz98ijk53ikpin7x5acl0yfkb2v7y77ma6lizy70rgl"; depends=[igraph Matrix]; };
SBGNview = derive2 { name="SBGNview"; version="1.8.0"; sha256="17jh1ad1a951r89xd9127c1wv5s4rzd03qq8rh5zjn2zxzpwswr4"; depends=[AnnotationDbi bookdown httr igraph KEGGREST knitr pathview Rdpack rmarkdown rsvg SBGNview_data SummarizedExperiment xml2]; };
SBMLR = derive2 { name="SBMLR"; version="1.90.0"; sha256="08cvhlrh13v571jc0fgfiwzc041nq2ndxpy5nsxmgpbsw5ryfgff"; depends=[deSolve XML]; };
SC3 = derive2 { name="SC3"; version="1.22.0"; sha256="1vbzinr4aiskv9hjbqqzzy3chj48lzk9vv1zk7vr9v8w6qwlg3fm"; depends=[BiocGenerics cluster doParallel doRNG e1071 foreach ggplot2 pheatmap Rcpp RcppArmadillo robustbase ROCR rrcov S4Vectors shiny SingleCellExperiment SummarizedExperiment WriteXLS]; };
SCAN_UPC = derive2 { name="SCAN.UPC"; version="2.36.0"; sha256="16d161x1npa4lh6ckp0p9ykdrj3x36gsylmq1kjm2vw8g4zknszv"; depends=[affy affyio Biobase Biostrings foreach GEOquery IRanges MASS oligo sva]; };
SCANVIS = derive2 { name="SCANVIS"; version="1.7.0"; sha256="163026iz66687s7d27sj78vvn5n6df66qf0s5zxaallyx2gmh56x"; depends=[IRanges plotrix RCurl rtracklayer]; };
SCANVIS = derive2 { name="SCANVIS"; version="1.8.0"; sha256="08cpq7cklv1z108cy0d6abv8xq8ins4ihdwzr04fr8bg2ikbi21z"; depends=[IRanges plotrix RCurl rtracklayer]; };
SCATE = derive2 { name="SCATE"; version="1.4.0"; sha256="1b04bggi0rw9jmgak5j2ca6msqdrq1qdphg3g9w77a1rqyxza86s"; depends=[GenomicAlignments GenomicRanges mclust preprocessCore Rtsne SCATEData splines2 xgboost]; };
SCArray = derive2 { name="SCArray"; version="1.2.0"; sha256="1jji2cikxkc40zaqwcknrpz5a6nyrqhbirx5ivsdnwslm8l79xmk"; depends=[BiocGenerics DelayedArray DelayedMatrixStats gdsfmt IRanges S4Vectors SingleCellExperiment SummarizedExperiment]; };
SCBN = derive2 { name="SCBN"; version="1.12.0"; sha256="19jpbr5nr59dc9khbbx60gzbsg8llfd1zqwb9v88nr43v059k13f"; depends=[]; };
@ -934,7 +934,7 @@ in with self; {
Spaniel = derive2 { name="Spaniel"; version="1.8.0"; sha256="0js302hgxn0q9xy7s6pdxidvhfcvm711bci6cw3a3bwhq2kacvnc"; depends=[dplyr DropletUtils ggplot2 igraph jpeg jsonlite magrittr png S4Vectors scater scran Seurat shiny SingleCellExperiment SummarizedExperiment]; };
SparseSignatures = derive2 { name="SparseSignatures"; version="2.4.0"; sha256="0hz48bvw20qdvfb5ci4d9zq3znpzklv0mhhxrpd8n23xv8amby0l"; depends=[Biostrings BSgenome data_table GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges NMF nnlasso nnls reshape2]; };
SpatialCPie = derive2 { name="SpatialCPie"; version="1.10.0"; sha256="0ml8fbjhnb2azvfcplpaw2zfvngkxn7z81d1s5f2shiww6x3qb8f"; depends=[colorspace data_table digest dplyr ggforce ggiraph ggplot2 ggrepel igraph lpSolve purrr readr rlang shiny shinycssloaders shinyjs shinyWidgets SummarizedExperiment tibble tidyr tidyselect zeallot]; };
SpatialDecon = derive2 { name="SpatialDecon"; version="1.3.0"; sha256="1gbkdp2d5x6apmlv35rg1vjfnfsyp1dvchgdlq4yzqkslc7jib7y"; depends=[logNormReg]; };
SpatialDecon = derive2 { name="SpatialDecon"; version="1.4.3"; sha256="11hb28m7h78cvzz9s545jzssnbxjbhfmdb03rxbvxq1rdh0whljr"; depends=[Biobase GeomxTools Matrix repmis SeuratObject]; };
SpatialExperiment = derive2 { name="SpatialExperiment"; version="1.4.0"; sha256="1jn2xr51hv1pm53pgsilhbwal0bnz7mc17z5plpjxgh7jn9bx4x2"; depends=[BiocFileCache BiocGenerics DropletUtils magick rjson S4Vectors SingleCellExperiment SummarizedExperiment]; };
SpeCond = derive2 { name="SpeCond"; version="1.48.0"; sha256="1mpzf9l7yim59wfg244rzqxm9vb10lp88688p5v2whcv5xx0a34a"; depends=[Biobase fields hwriter mclust RColorBrewer]; };
Spectra = derive2 { name="Spectra"; version="1.4.0"; sha256="1kgwm040j23mjihym0kg5r9qz4f1ssfvnd3f6m5jasx59wgpv46f"; depends=[BiocGenerics BiocParallel fs IRanges MsCoreUtils ProtGenerics S4Vectors]; };
@ -973,7 +973,7 @@ in with self; {
TMixClust = derive2 { name="TMixClust"; version="1.16.0"; sha256="1i69q92ss9q2vv6hyxvq8wv55w1937rmda43a8qfblzy0jr5avww"; depends=[Biobase BiocParallel cluster flexclust gss mvtnorm SPEM zoo]; };
TNBC_CMS = derive2 { name="TNBC.CMS"; version="1.10.0"; sha256="1iz2jb895hsliavk9g93mvvccla461cmifmsam3qdscj09gfl17x"; depends=[e1071 forestplot GGally ggplot2 ggpubr GSVA pheatmap pracma quadprog R_utils RColorBrewer SummarizedExperiment survival]; };
TOAST = derive2 { name="TOAST"; version="1.7.1"; sha256="1r0kpk6i1b5r5swp4l5yw8mid719li4yqa82p9kzmgg7z0xxvmaz"; depends=[corpcor EpiDISH limma nnls SummarizedExperiment]; };
TPP = derive2 { name="TPP"; version="3.22.0"; sha256="1sa5scbv3ck17v02czmj8c9kva5xzdbcqpfm4l9p4wn8xw6v9hk3"; depends=[Biobase biobroom broom data_table doParallel dplyr foreach futile_logger ggplot2 gridExtra knitr limma magrittr MASS mefa nls2 openxlsx plyr purrr RColorBrewer RCurl reshape2 rmarkdown stringr tibble tidyr VennDiagram VGAM]; };
TPP = derive2 { name="TPP"; version="3.22.1"; sha256="0vr8sv22rhhrv63arz33vbkp5i3cwd03bz54qwx3zbdcf5l3snhy"; depends=[Biobase biobroom broom data_table doParallel dplyr foreach futile_logger ggplot2 gridExtra knitr limma magrittr MASS mefa nls2 openxlsx plyr purrr RColorBrewer RCurl reshape2 rmarkdown stringr tibble tidyr VennDiagram VGAM]; };
TPP2D = derive2 { name="TPP2D"; version="1.10.0"; sha256="183gf3v1nj0nqll817whxdif0kiwscil88ig0vjj1hn3936q59v6"; depends=[BiocParallel doParallel dplyr foreach ggplot2 limma MASS openxlsx RCurl stringr tidyr]; };
TRESS = derive2 { name="TRESS"; version="1.0.0"; sha256="0zmzbpzhcsykbpifs5m8md2lhami0ya7y9sf2rdmadgbx17gvzj7"; depends=[AnnotationDbi GenomicFeatures GenomicRanges IRanges Matrix matrixStats Rsamtools rtracklayer S4Vectors]; };
TRONCO = derive2 { name="TRONCO"; version="2.26.0"; sha256="0xjjv67mcgb90f6r3i6qy9d8k6sif4asq7qiiq1bhs90806jrrsb"; depends=[bnlearn cgdsr circlize doParallel foreach gridExtra gtable gtools igraph iterators R_matlab RColorBrewer Rgraphviz scales xtable]; };
@ -1105,11 +1105,11 @@ in with self; {
biobroom = derive2 { name="biobroom"; version="1.26.0"; sha256="034gbywrscv23kk1qnk7sc7dxdckmf60wh29fz65v1n28mkf180r"; depends=[Biobase broom dplyr tidyr]; };
biobtreeR = derive2 { name="biobtreeR"; version="1.6.0"; sha256="0m9gx2g5ishbbh7aqp09mpknhr7q1v5ap0s6xp6ccj01pz2gkk8s"; depends=[httpuv httr jsonlite stringi]; };
biocGraph = derive2 { name="biocGraph"; version="1.56.0"; sha256="0c7r0c1kx22dlwi6d1ldbkkbf53yi0p3vmgbwzrbkn3cina7bcxq"; depends=[BiocGenerics geneplotter graph Rgraphviz]; };
biocViews = derive2 { name="biocViews"; version="1.62.0"; sha256="094npjhjv3ncd49fzzq1p8rv274r2h1h87la81sy1haf1dbppnh9"; depends=[Biobase BiocManager graph RBGL RCurl RUnit XML]; };
biocViews = derive2 { name="biocViews"; version="1.62.1"; sha256="1v6himzp546dpb990vv0nlya21w8x2x30137rsmahjzg942nzs9r"; depends=[Biobase BiocManager graph RBGL RCurl RUnit XML]; };
biocthis = derive2 { name="biocthis"; version="1.4.0"; sha256="0kh5lmv992v4r5r58x29403cll0zxr9fx4ar81nrzvnch5668v39"; depends=[BiocManager fs glue rlang styler usethis]; };
biodb = derive2 { name="biodb"; version="1.2.0"; sha256="0q343zbx341xdy634p50k7bj6byv8v2rqzy50nw75a79206pajl4"; depends=[BiocFileCache chk jsonlite lgr lifecycle openssl plyr progress R6 rappdirs Rcpp RCurl RSQLite stringr testthat withr XML yaml]; };
biodbChebi = derive2 { name="biodbChebi"; version="1.0.1"; sha256="1f1bbfk0zp7x07vgnskd0wxb0zv2pvjk22cndw2zn7pgds0g9d9d"; depends=[biodb R6]; };
biodbHmdb = derive2 { name="biodbHmdb"; version="1.0.0"; sha256="0ngg6gjpcbxs33lq7kwa2a7h88irdvk9z96lfi4gcsgp3rjp782x"; depends=[biodb R6 Rcpp testthat]; };
biodbHmdb = derive2 { name="biodbHmdb"; version="1.0.1"; sha256="097ia9xzc4pc84n79wadymsmzlip1ygqm54x4fh2hdfinib8mjgb"; depends=[biodb R6 Rcpp testthat]; };
biodbKegg = derive2 { name="biodbKegg"; version="1.0.0"; sha256="16xmm3ymzd4jf55plahbxi844hpv0hpqq6v2ygcjf6wrs0yy2mhd"; depends=[biodb chk lifecycle R6]; };
biodbLipidmaps = derive2 { name="biodbLipidmaps"; version="1.0.1"; sha256="14086f88r7mavpzp823mhpi4b9zq8q2kqxlwnmp02i03jj8mjnr8"; depends=[biodb lifecycle R6]; };
biodbUniprot = derive2 { name="biodbUniprot"; version="1.0.0"; sha256="1aydkqqb8vs5b844ff1j09a7g8rmf7qr6rg2aw8nqshihq510v4d"; depends=[biodb R6]; };
@ -1131,7 +1131,7 @@ in with self; {
brendaDb = derive2 { name="brendaDb"; version="1.8.0"; sha256="1yprf5hjzhfhzq71q8vzf45j0dakxbdr9rv166m0zs3nk5f75g3r"; depends=[BiocFileCache BiocParallel crayon curl dplyr magrittr purrr rappdirs Rcpp rlang stringr tibble tidyr xml2]; };
bridge = derive2 { name="bridge"; version="1.58.0"; sha256="0qzniimw426vivslf0g99c508298cgwykhzrrjhnjc2bfan63iry"; depends=[rama]; };
bsseq = derive2 { name="bsseq"; version="1.30.0"; sha256="1i30zf6457a0qd64s89x9l544y1h0hj9rfgf1m8l4krd487a9b9d"; depends=[beachmat Biobase BiocGenerics BiocParallel Biostrings BSgenome data_table DelayedArray DelayedMatrixStats GenomeInfoDb GenomicRanges gtools HDF5Array IRanges limma locfit permute R_utils Rcpp rhdf5 S4Vectors scales SummarizedExperiment]; };
bugsigdbr = derive2 { name="bugsigdbr"; version="1.0.0"; sha256="04msihdxm52nhfy5zrd1wm92p8dss0zy5yb27rrcddflil77rgvc"; depends=[BiocFileCache vroom]; };
bugsigdbr = derive2 { name="bugsigdbr"; version="1.0.1"; sha256="1wrk9m4ja129d4al3w286hzg2gjcnq5riaa99q35psqcwm1bp94f"; depends=[BiocFileCache vroom]; };
bumphunter = derive2 { name="bumphunter"; version="1.36.0"; sha256="0d5cz9xy7vhcaj5n3h4cfiv08sn7wn83458525pdwvdzzm449xgv"; depends=[AnnotationDbi BiocGenerics doRNG foreach GenomeInfoDb GenomicFeatures GenomicRanges IRanges iterators limma locfit matrixStats S4Vectors]; };
cBioPortalData = derive2 { name="cBioPortalData"; version="2.6.0"; sha256="0bapc4c9x328l0wrnm6zzq1byf1l33rza8xmadrfqfiq6j56qakq"; depends=[AnVIL BiocFileCache digest dplyr GenomeInfoDb GenomicRanges httr IRanges MultiAssayExperiment RaggedExperiment readr RTCGAToolbox S4Vectors SummarizedExperiment TCGAutils tibble tidyr]; };
cTRAP = derive2 { name="cTRAP"; version="1.12.0"; sha256="13q0pyc6vvxl41hg8cz4rdqrq0vppnna5fw2cin58dm2mayhd6p9"; depends=[AnnotationDbi AnnotationHub binr cowplot data_table dplyr DT fastmatch fgsea ggplot2 ggrepel highcharter htmltools httr limma pbapply purrr qs R_utils readxl reshape2 rhdf5 rlang scales shiny shinycssloaders tibble]; };
@ -1250,7 +1250,7 @@ in with self; {
ddPCRclust = derive2 { name="ddPCRclust"; version="1.14.0"; sha256="13s2h8bfd6i6shbm9iwlz99nvyif6c934ccgkdihgbxfq2zacmdj"; depends=[clue flowCore flowDensity flowPeaks ggplot2 openxlsx plotrix R_utils SamSPECTRAL]; };
dearseq = derive2 { name="dearseq"; version="1.6.0"; sha256="07vr27rv3z86ajd62c0ilvfgz9z35qsiwwi5pv4sygbhnnjwh3rc"; depends=[ggplot2 KernSmooth matrixStats patchwork pbapply statmod survey viridisLite]; };
debCAM = derive2 { name="debCAM"; version="1.12.0"; sha256="1nqc2r9wr4q71zsya0ylwkxc91sqa4zkal26wiv5h10bk5nxig5r"; depends=[apcluster Biobase BiocParallel corpcor DMwR2 geometry NMF nnls pcaPP rJava SummarizedExperiment]; };
debrowser = derive2 { name="debrowser"; version="1.22.0"; sha256="0d0sy72hyl2jbkfn4fh18yp51hh6qz30yk7iacz69y59c5rcqn8s"; depends=[annotate AnnotationDbi apeglm ashr clusterProfiler colourpicker DESeq2 DOSE DT edgeR enrichplot GenomicRanges ggplot2 gplots Harman heatmaply igraph IRanges jsonlite limma org_Hs_eg_db org_Mm_eg_db pathview plotly RColorBrewer RCurl reshape2 S4Vectors shiny shinyBS shinydashboard shinyjs stringi SummarizedExperiment sva]; };
debrowser = derive2 { name="debrowser"; version="1.22.1"; sha256="0z3jq3xb6bbks5hqikmsb4frp8ilvrz741ir9nyq5cfz5v1djwfv"; depends=[annotate AnnotationDbi apeglm ashr clusterProfiler colourpicker DESeq2 DOSE DT edgeR enrichplot GenomicRanges ggplot2 gplots Harman heatmaply igraph IRanges jsonlite limma org_Hs_eg_db org_Mm_eg_db pathview plotly RColorBrewer RCurl reshape2 S4Vectors shiny shinyBS shinydashboard shinyjs stringi SummarizedExperiment sva]; };
deco = derive2 { name="deco"; version="1.10.0"; sha256="1bvn5wipvyxy5h74wl1433pv5lzdp82m8yxwr3b8cljnlqcqh9da"; depends=[ade4 AnnotationDbi Biobase BiocParallel BiocStyle cluster foreign gdata ggplot2 gplots gridExtra limma locfit made4 RColorBrewer reshape2 scatterplot3d sfsmisc SummarizedExperiment]; };
decompTumor2Sig = derive2 { name="decompTumor2Sig"; version="2.10.0"; sha256="125913q735vazmlnvg8vdca8j88y0mx24zdlqzsgzw9ylkwbq86p"; depends=[BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg19 data_table GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggseqlogo gridExtra Matrix plyr quadprog readxl S4Vectors SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; };
decontam = derive2 { name="decontam"; version="1.14.0"; sha256="0k8rp91ap3dwzhhhg3s7ikbphxvgha7m118ayrghshp8929g3cdm"; depends=[ggplot2 reshape2]; };
@ -1299,7 +1299,7 @@ in with self; {
enrichTF = derive2 { name="enrichTF"; version="1.10.0"; sha256="0ssjsl5vh0wdq0584yl6c61d8bp5n3qvkgfrqdlpjfwb7b7gh4xv"; depends=[BiocGenerics BSgenome clusterProfiler GenomeInfoDb GenomicRanges ggplot2 ggpubr heatmap3 IRanges JASPAR2018 magrittr motifmatchr pipeFrame R_utils rmarkdown rtracklayer S4Vectors TFBSTools]; };
enrichplot = derive2 { name="enrichplot"; version="1.14.1"; sha256="0nsx96mkcg0hhg3x8jndzq3xvq9bq7m4yf1b3ry73b17ladx81ch"; depends=[aplot DOSE ggplot2 ggraph ggtree GOSemSim igraph magrittr plyr purrr RColorBrewer reshape2 scatterpie shadowtext yulab_utils]; };
ensemblVEP = derive2 { name="ensemblVEP"; version="1.36.0"; sha256="1b9i8qv16mrr31qpvvcimcd80nkykky8dygi90jinkzgvkzdxi64"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges S4Vectors SummarizedExperiment VariantAnnotation]; };
ensembldb = derive2 { name="ensembldb"; version="2.18.0"; sha256="02rdbqp33g488w1df1rgp0dg63qrr6w2kmgigxzc8l9wmrvj0y1j"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings curl DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges ProtGenerics Rsamtools RSQLite rtracklayer S4Vectors]; };
ensembldb = derive2 { name="ensembldb"; version="2.18.1"; sha256="1272vflafd5c3zna77lxm8895h6cjv2bvs4vbl3ja1nlg97j0zfk"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings curl DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges ProtGenerics Rsamtools RSQLite rtracklayer S4Vectors]; };
epiNEM = derive2 { name="epiNEM"; version="1.18.0"; sha256="0xs9jzy0d9iv45d5ina7ki79wix96318yp17mxhp1l4vdkpm3fk7"; depends=[BoolNet e1071 graph gtools igraph latex2exp lattice latticeExtra minet mnem pcalg RColorBrewer]; };
epialleleR = derive2 { name="epialleleR"; version="1.2.0"; sha256="1zgwwzrg9ngsfq186qsmvgwxcz0b9avr8wk1yadjlrjc9avgh2d3"; depends=[BH BiocGenerics data_table GenomeInfoDb GenomicRanges Rcpp Rhtslib stringi SummarizedExperiment VariantAnnotation zlibbioc]; };
epidecodeR = derive2 { name="epidecodeR"; version="1.2.0"; sha256="1fy3i7djpj2inlcpa2h4n5hzp0q6a555sc5axg1jwxiala9l8siv"; depends=[dplyr EnvStats GenomicRanges ggplot2 ggpubr IRanges rstatix rtracklayer]; };
@ -1360,7 +1360,7 @@ in with self; {
flowPlots = derive2 { name="flowPlots"; version="1.42.0"; sha256="01r6c0hwg34ym0gziirrbk96mapn9pkxhshn0gwb1rqw3jw56cfm"; depends=[]; };
flowSpecs = derive2 { name="flowSpecs"; version="1.8.0"; sha256="018y54w3dg8myywcda41lk07mbd5y99q07i9az0f938a5mb44vd8"; depends=[Biobase BiocGenerics BiocParallel flowCore ggplot2 reshape2 zoo]; };
flowStats = derive2 { name="flowStats"; version="4.6.0"; sha256="0jjfq66m4lbpkynwxaparkd05znhp3jl9ccj37gyghly294x3rm9"; depends=[Biobase BiocGenerics cluster fda flowCore flowViz flowWorkspace KernSmooth ks lattice MASS ncdfFlow RColorBrewer rrcov]; };
flowTime = derive2 { name="flowTime"; version="1.17.0"; sha256="160vx3zj34hf75rwbs0v0xa0skyzjg5q6l2qgajfyhz436i95lxl"; depends=[dplyr flowCore magrittr plyr rlang tibble]; };
flowTime = derive2 { name="flowTime"; version="1.18.0"; sha256="1kvy9gpyrc32041y6ngx6kqy3qikc5d48qrsmifm2xw9nxizk4m1"; depends=[dplyr flowCore magrittr plyr rlang tibble]; };
flowTrans = derive2 { name="flowTrans"; version="1.46.0"; sha256="1fkpma9a2097qay6mkswb7sb8jshvjmjldppz67l840d7mhkkpab"; depends=[flowClust flowCore flowViz]; };
flowUtils = derive2 { name="flowUtils"; version="1.58.0"; sha256="0rgybkzbn8c3kpbz0ddghp1np0gka0cgiqvkk5jbnhlgf4s07161"; depends=[Biobase corpcor flowCore graph RUnit XML]; };
flowVS = derive2 { name="flowVS"; version="1.26.0"; sha256="02vikjzbi5r426l6085rfdqqvy8n8yaq7fwli18q385nb81vah7i"; depends=[flowCore flowStats flowViz]; };
@ -1408,7 +1408,7 @@ in with self; {
gespeR = derive2 { name="gespeR"; version="1.26.0"; sha256="0fd204abvfmgl8gqqr0vnsjsihmbi4wb9q6slbnf8b0gkhpqhafq"; depends=[Biobase biomaRt cellHTS2 doParallel dplyr foreach ggplot2 glmnet Matrix reshape2]; };
getDEE2 = derive2 { name="getDEE2"; version="1.4.0"; sha256="04dqxx2qj3lwfpiv07s9dlgxc7as59cj7qbima9v09cnyciqkib6"; depends=[htm2txt SummarizedExperiment]; };
geva = derive2 { name="geva"; version="1.2.0"; sha256="0rx67qq52iab9qs8apb5a9j91cg9gn7z2xs56wpccd2ba72wdic8"; depends=[dbscan fastcluster matrixStats]; };
ggbio = derive2 { name="ggbio"; version="1.41.0"; sha256="02vpn2z0xlvahhr43hrimiljs446iwghiva4q6khi0a8r1jb5xsr"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings biovizBase BSgenome ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GGally ggplot2 gridExtra gtable Hmisc IRanges OrganismDbi reshape2 rlang Rsamtools rtracklayer S4Vectors scales SummarizedExperiment VariantAnnotation]; };
ggbio = derive2 { name="ggbio"; version="1.42.0"; sha256="1svmjaa3gisi39sl52337drvd54havcy5pjmwrykgykz5flid2m7"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings biovizBase BSgenome ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GGally ggplot2 gridExtra gtable Hmisc IRanges OrganismDbi reshape2 rlang Rsamtools rtracklayer S4Vectors scales SummarizedExperiment VariantAnnotation]; };
ggcyto = derive2 { name="ggcyto"; version="1.22.0"; sha256="17dnmsa92gc2za36c3klgd7rklqlxrhkzs5ksnrc1am6a4knc0p1"; depends=[data_table flowCore flowWorkspace ggplot2 gridExtra hexbin ncdfFlow plyr RColorBrewer rlang scales]; };
ggmsa = derive2 { name="ggmsa"; version="1.0.0"; sha256="0w4jqmsa87ijflmyya8fnwmgha6s5ax2r9d67b0a3d7yz3d1kms8"; depends=[aplot Biostrings dplyr ggalt ggforce ggplot2 magrittr R4RNA RColorBrewer seqmagick tidyr]; };
ggspavis = derive2 { name="ggspavis"; version="1.0.0"; sha256="0lm7z8fzvw47zq618lfyxszy42qwhjr71xsyjsygvcl604z68jx0"; depends=[ggplot2 ggside SingleCellExperiment SpatialExperiment SummarizedExperiment]; };
@ -1460,7 +1460,7 @@ in with self; {
iBMQ = derive2 { name="iBMQ"; version="1.34.0"; sha256="1b15xiv8g8p2qy3dhg80ggppri9v7hawjz2kaj8an231vgl7j546"; depends=[Biobase ggplot2]; };
iCARE = derive2 { name="iCARE"; version="1.22.0"; sha256="17x6kcrl2wrnj7dmvbyw3cflhv07hymyy78mj0476x0w7aiihwjw"; depends=[gtools Hmisc plotrix]; };
iCNV = derive2 { name="iCNV"; version="1.14.0"; sha256="1hhmnlq3sliz253badrcwbkdr384pyl2jb3s0dkp585gngz143xg"; depends=[CODEX data_table dplyr fields ggplot2 rlang tidyr truncnorm]; };
iCOBRA = derive2 { name="iCOBRA"; version="1.22.0"; sha256="0qg32g1rfvh6mx8wny1lrva9vc347288hzml7yb4rnrsx1hggkpa"; depends=[dplyr DT ggplot2 limma reshape2 ROCR scales shiny shinyBS shinydashboard UpSetR]; };
iCOBRA = derive2 { name="iCOBRA"; version="1.22.1"; sha256="05j3h314l2bw8n61h1nyiqhm3z7c1axycn4p3xkfccq5i4mcqvn2"; depends=[dplyr DT ggplot2 limma reshape2 ROCR scales shiny shinyBS shinydashboard UpSetR]; };
iCheck = derive2 { name="iCheck"; version="1.24.0"; sha256="06nfnj5267j9ynhz8hkzvada1d1yk62zqynif5xm6n7m9sk9fsl5"; depends=[affy Biobase GeneSelectMMD gplots limma lmtest lumi MASS preprocessCore randomForest rgl scatterplot3d]; };
iChip = derive2 { name="iChip"; version="1.48.0"; sha256="1zlwkw2qva32v515pziif6gdik5a5hqs53f3im12fzn3wgpcxvh0"; depends=[limma]; };
iClusterPlus = derive2 { name="iClusterPlus"; version="1.30.0"; sha256="0w6r2clk8wdnnnjmq3cspmxiq1c8vwprd66xmdrhcqzbjkpkdw2b"; depends=[]; };
@ -1590,7 +1590,7 @@ in with self; {
miRcomp = derive2 { name="miRcomp"; version="1.24.0"; sha256="1kknr5m62ly03p5yzam5c3hwpaky25g3y92h6z3sg7xfjgsd9qpz"; depends=[Biobase KernSmooth miRcompData]; };
miRmine = derive2 { name="miRmine"; version="1.16.0"; sha256="0cx7181dsfclq2dplx1wcgnaqhxlgyfxsi0g4ii82yp1ka5fpml4"; depends=[SummarizedExperiment]; };
miRspongeR = derive2 { name="miRspongeR"; version="1.20.0"; sha256="06nczhbbvx1dmmwry88057zbvw3dq64qn5mn91ipi5qfnckb84wd"; depends=[clusterProfiler corpcor DOSE igraph linkcomm MCL org_Hs_eg_db Rcpp ReactomePA survival varhandle]; };
mia = derive2 { name="mia"; version="1.1.19"; sha256="0fzmp349pwlka8qw58mym9zi0z35i7cfs3dnfxlygj58f9a41dk5"; depends=[ape BiocGenerics BiocParallel Biostrings DECIPHER decontam DelayedArray DelayedMatrixStats DirichletMultinomial dplyr IRanges MASS rlang S4Vectors scater scuttle SingleCellExperiment SummarizedExperiment tibble tidyr TreeSummarizedExperiment vegan]; };
mia = derive2 { name="mia"; version="1.2.0"; sha256="1bn5wrhx95yyfp178cz3xpxvqvjf6sy6xch510afbr7rarmyjrnp"; depends=[ape BiocGenerics BiocParallel Biostrings DECIPHER decontam DelayedArray DelayedMatrixStats DirichletMultinomial dplyr IRanges MASS rlang S4Vectors scater scuttle SingleCellExperiment SummarizedExperiment tibble tidyr TreeSummarizedExperiment vegan]; };
miaSim = derive2 { name="miaSim"; version="1.0.0"; sha256="0870jvqwcg08fyzb4c9qsb6sk7r4sxqzrrfzijd25sdjbqly4zzx"; depends=[deSolve poweRlaw SummarizedExperiment]; };
miaViz = derive2 { name="miaViz"; version="1.2.0"; sha256="1plkr810cnb6kq7zqlmnx8c2mfa1gzsa92r1hj6xrqx9ykc8hapd"; depends=[ape BiocGenerics BiocParallel DelayedArray DirichletMultinomial dplyr ggnewscale ggplot2 ggraph ggtree mia purrr rlang S4Vectors scater SummarizedExperiment tibble tidygraph tidyr tidytree TreeSummarizedExperiment viridis]; };
microRNA = derive2 { name="microRNA"; version="1.52.0"; sha256="0x145alfh8qnbnhahxhfygcqc4xwiiirabl9k9nbcyadc5fawfc1"; depends=[Biostrings]; };
@ -1611,7 +1611,7 @@ in with self; {
mistyR = derive2 { name="mistyR"; version="1.2.1"; sha256="1a3z8d1n0asis3fmpzsiyj13mhrsm72lqx36y4bj6rf3vhzsxny3"; depends=[assertthat caret deldir digest distances dplyr filelock furrr ggplot2 MASS purrr R_utils ranger readr rlang rlist stringr tibble tidyr withr]; };
mitch = derive2 { name="mitch"; version="1.6.0"; sha256="1hllnfrc191dz4m8w9b1c4r2l0f44v9nrjan0kmmxhkki408isyn"; depends=[beeswarm echarts4r GGally ggplot2 gplots gridExtra knitr MASS plyr reshape2 rmarkdown]; };
mitoClone2 = derive2 { name="mitoClone2"; version="1.0.0"; sha256="1miycq8vc79i3x2nl44b5icsbnp23brljc3ic92byk0zdcp3dqh5"; depends=[deepSNV GenomicRanges ggplot2 pheatmap reshape2 Rhtslib S4Vectors]; };
mixOmics = derive2 { name="mixOmics"; version="6.17.26"; sha256="10ir4876sjmw2mw0cjvshwy3qyhsyz6g1ihyr3dycgzya0jcxw1x"; depends=[BiocParallel corpcor dplyr ellipse ggplot2 ggrepel gridExtra igraph lattice MASS matrixStats rARPACK RColorBrewer reshape2 tidyr]; };
mixOmics = derive2 { name="mixOmics"; version="6.18.0"; sha256="0jwkb5scc33nfn2mibga8vp00pmc24ham71gpkbizvy43cy85icf"; depends=[BiocParallel corpcor dplyr ellipse ggplot2 ggrepel gridExtra igraph lattice MASS matrixStats rARPACK RColorBrewer reshape2 tidyr]; };
mnem = derive2 { name="mnem"; version="1.10.0"; sha256="078x80j1jh7drv4fkly9gayiajszjvbjfk82aslicajh9hn04rmq"; depends=[cluster data_table e1071 flexclust ggplot2 graph lattice Linnorm matrixStats naturalsort Rcpp RcppEigen Rgraphviz snowfall tsne wesanderson]; };
moanin = derive2 { name="moanin"; version="1.2.0"; sha256="1fd4hi32krzwbpxz2qn1sh26zph94lvfkx4gc7dga911r3cms8y2"; depends=[ClusterR edgeR limma MASS matrixStats NMI reshape2 S4Vectors SummarizedExperiment topGO viridis zoo]; };
mogsa = derive2 { name="mogsa"; version="1.28.0"; sha256="0a7d81grd3dn1im4q0xss0qqvgbas9yh5lc24fz05hbfbzwgzr2l"; depends=[Biobase BiocGenerics cluster corpcor genefilter gplots graphite GSEABase svd]; };
@ -1742,7 +1742,7 @@ in with self; {
plgem = derive2 { name="plgem"; version="1.66.0"; sha256="06w8xlw4j1fc9ipdgw55dvhp07f04icmhr20lqzwwhqd5pskrra3"; depends=[Biobase MASS]; };
plier = derive2 { name="plier"; version="1.64.0"; sha256="1sw89kici1h2xfg7zvrfdm7b7iw5n3mzwhyz82676w2vk0lgkpn4"; depends=[affy Biobase]; };
plotGrouper = derive2 { name="plotGrouper"; version="1.12.0"; sha256="191grbs8sy8jfxz9a6vsp9qf3zaqppp23fcl5qdrmfzims9krhlw"; depends=[colourpicker dplyr egg ggplot2 ggpubr gridExtra gtable Hmisc magrittr readr readxl rlang scales shiny shinythemes stringr tibble tidyr]; };
plotgardener = derive2 { name="plotgardener"; version="1.0.0"; sha256="02qqzqb4fdfg3j0hhfjpy8q7xbbsb2n2d79pvsa1dhyihwai5w0q"; depends=[curl data_table dplyr ggplotify plyranges purrr RColorBrewer Rcpp rlang strawr]; };
plotgardener = derive2 { name="plotgardener"; version="1.0.1"; sha256="1p9h82pah34n1m44fkkwbi5m682icql8xxkf8l7i4dhx6mddv58g"; depends=[curl data_table dplyr ggplotify plyranges purrr RColorBrewer Rcpp rlang strawr]; };
plyranges = derive2 { name="plyranges"; version="1.14.0"; sha256="1s4zyr57x71v9ywdz6s27z158nhazwhmhkx3944l8zsqd5ciwnnc"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges IRanges magrittr rlang Rsamtools rtracklayer S4Vectors tidyselect]; };
pmm = derive2 { name="pmm"; version="1.26.0"; sha256="0vmkpqxf0lfgkbmyvham128201d33dv3wf9g31nrlwnxd0jcxszn"; depends=[lme4]; };
pmp = derive2 { name="pmp"; version="1.6.0"; sha256="15yggymqh329f2ibhmg9wmh76hbyn0gpz9k1cxzkvh787lss1w72"; depends=[ggplot2 impute matrixStats missForest pcaMethods reshape2 S4Vectors SummarizedExperiment]; };
@ -1946,7 +1946,7 @@ in with self; {
snpStats = derive2 { name="snpStats"; version="1.44.0"; sha256="0ha34b5cg26940xihgky45adns1nflrgq2qjq77w4bncxpaacsqq"; depends=[BiocGenerics Matrix survival zlibbioc]; };
soGGi = derive2 { name="soGGi"; version="1.26.0"; sha256="1g2lsi8nqpi2vm284jv1ab3i9k03kwqsy9zf51vfnpqq31lrdlki"; depends=[BiocGenerics BiocParallel Biostrings chipseq GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges preprocessCore reshape2 Rsamtools rtracklayer S4Vectors SummarizedExperiment]; };
sojourner = derive2 { name="sojourner"; version="1.8.0"; sha256="0ld1gh6vznmvd09xrza5xs93n3g0vf8zqymn58b23rilsrvm2cbc"; depends=[dplyr EBImage fitdistrplus ggplot2 gridExtra lattice MASS mclust minpack_lm mixtools mltools nls2 pixmap plyr R_matlab Rcpp reshape2 rlang sampSurf scales shiny shinyjs sp truncnorm]; };
sparrow = derive2 { name="sparrow"; version="1.0.0"; sha256="1rn4mq2hkpn1902iy20vz7npqjjdzglmx0al3r98l3sshh8pqnxc"; depends=[babelgene BiocGenerics BiocParallel BiocSet checkmate circlize ComplexHeatmap data_table DelayedMatrixStats edgeR ggplot2 GSEABase irlba limma Matrix plotly viridis]; };
sparrow = derive2 { name="sparrow"; version="1.0.1"; sha256="1i0dzj5wnphfhxdl6gmwf3qy8x9v5vb7c35mkq5xml6miwl3x5ha"; depends=[babelgene BiocGenerics BiocParallel BiocSet checkmate circlize ComplexHeatmap data_table DelayedMatrixStats edgeR ggplot2 GSEABase irlba limma Matrix plotly viridis]; };
sparseDOSSA = derive2 { name="sparseDOSSA"; version="1.18.0"; sha256="1rn8jv2b3fmyibgc6h91mhnl9nzqkds02pvj6vbq12pfvhhb021i"; depends=[MASS MCMCpack optparse tmvtnorm]; };
sparseMatrixStats = derive2 { name="sparseMatrixStats"; version="1.6.0"; sha256="0ifqj4a6mn4749sr62gq3dwd6mmbbzdx5mh5b5663vcgl1kw96x1"; depends=[Matrix MatrixGenerics matrixStats Rcpp]; };
sparsenetgls = derive2 { name="sparsenetgls"; version="1.12.0"; sha256="0g8vbzhzyccyi77x49c8idhwy357a2azywvllinjapgwiy88s02a"; depends=[glmnet huge MASS Matrix]; };
@ -1958,7 +1958,7 @@ in with self; {
spikeLI = derive2 { name="spikeLI"; version="2.54.0"; sha256="1ndxvamn2q6ad86dfql1qa7c87xfg8q3zk6f33ip458ikmx16h3f"; depends=[]; };
spiky = derive2 { name="spiky"; version="1.0.0"; sha256="0r8n6icjkhwaq395ikcw64wgks89s84a97xc8lwgrb4lkmnlkgyj"; depends=[bamlss Biostrings BlandAltmanLeh BSgenome GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges Rsamtools S4Vectors scales]; };
spkTools = derive2 { name="spkTools"; version="1.50.0"; sha256="1fbh8lfhl3j7dgx7my3ajjfvzfl0x5rm3m0hszm9dk7zvn6zl67x"; depends=[Biobase gtools RColorBrewer]; };
splatter = derive2 { name="splatter"; version="1.18.0"; sha256="0wxg4s7xragzd0ixav95jvc1ydizvnszgcvrzsn2fn9hmdi8bc2q"; depends=[BiocGenerics BiocParallel checkmate crayon edgeR fitdistrplus ggplot2 locfit matrixStats S4Vectors scales scater SingleCellExperiment SummarizedExperiment]; };
splatter = derive2 { name="splatter"; version="1.18.1"; sha256="1cbq3yfgpv54xkgax1m4c4vh29afdfffs7f8xi7fp7acvp365azx"; depends=[BiocGenerics BiocParallel checkmate crayon edgeR fitdistrplus ggplot2 locfit matrixStats S4Vectors scales scater SingleCellExperiment SummarizedExperiment]; };
splineTimeR = derive2 { name="splineTimeR"; version="1.22.0"; sha256="0pbfflicb2zpiddslivyh9i2vly6h8jfbmpm38ljijzshmsvra6v"; depends=[Biobase FIs GeneNet GSEABase gtools igraph limma longitudinal]; };
splots = derive2 { name="splots"; version="1.60.0"; sha256="0ng1shqpjmgbfs4hlcfncq4ipl59a9xwv42h7zcc45hzm7013fq9"; depends=[RColorBrewer]; };
spqn = derive2 { name="spqn"; version="1.6.0"; sha256="081b87w4gsrqp9ny9gqc85g4nm17kxrs2bagxgja280hf7ry2f08"; depends=[BiocGenerics ggplot2 ggridges matrixStats SummarizedExperiment]; };

501
pkgs/development/r-modules/cran-packages.nix generated
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