github-actions[bot]
2 years ago
committed by
GitHub
commit
2f6b084a18
@ -0,0 +1,56 @@ |
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{ lib |
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, stdenvNoCC |
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, fetchFromGitHub |
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, jdk8 |
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, makeWrapper |
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, jre8 |
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, zip |
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}: |
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let |
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jdk = jdk8; |
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jre = jre8; |
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in |
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stdenvNoCC.mkDerivation rec { |
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pname = "astral"; |
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version = "5.7.1"; |
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|
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src = fetchFromGitHub { |
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owner = "smirarab"; |
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repo = "ASTRAL"; |
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rev = "v${version}"; |
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sha256 = "043w2z6gbrisqirdid022f4b8jps1pp5syi344krv2bis1gjq5sn"; |
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}; |
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|
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nativeBuildInputs = [ jdk makeWrapper jre zip ]; |
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|
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buildPhase = '' |
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patchShebangs ./make.sh |
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./make.sh |
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''; |
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doCheck = true; |
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checkPhase = '' |
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runHook preCheck |
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java -jar astral.${version}.jar -i main/test_data/song_primates.424.gene.tre |
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runHook postCheck |
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''; |
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installPhase = '' |
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mkdir -p $out/share/lib |
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mkdir -p $out/bin |
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mv astral.${version}.jar $out/share/ |
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mv lib/*.jar $out/share/lib |
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mv Astral.${version}.zip $out/share/ |
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cp -a main/test_data $out/share/ |
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makeWrapper ${jre}/bin/java $out/bin/astral \ |
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--add-flags "-jar $out/share/astral.${version}.jar" |
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''; |
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|
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meta = with lib; { |
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homepage = "https://github.com/smirarab/ASTRAL"; |
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description = "Tool for estimating an unrooted species tree given a set of unrooted gene trees"; |
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license = licenses.asl20; |
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maintainers = with maintainers; [ bzizou ]; |
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}; |
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} |
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@ -1,13 +0,0 @@ |
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{ buildDunePackage, resto, resto-directory, ezresto, lwt }: |
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|
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buildDunePackage { |
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pname = "ezresto-directory"; |
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inherit (resto) src version meta useDune2 doCheck; |
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|
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propagatedBuildInputs = [ |
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ezresto |
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resto-directory |
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resto |
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lwt |
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]; |
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} |
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@ -1,12 +0,0 @@ |
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{ lib, buildDunePackage, resto, resto-json, uri }: |
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buildDunePackage { |
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pname = "ezresto"; |
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inherit (resto) src version meta useDune2 doCheck; |
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|
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propagatedBuildInputs = [ |
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uri |
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resto |
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resto-json |
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]; |
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} |
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@ -0,0 +1,45 @@ |
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{ lib |
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, aiohttp |
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, buildPythonPackage |
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, fetchPypi |
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, poetry-core |
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, pydantic |
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, pythonOlder |
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}: |
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|
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buildPythonPackage rec { |
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pname = "huum"; |
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version = "0.5.0"; |
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format = "pyproject"; |
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disabled = pythonOlder "3.9"; |
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src = fetchPypi { |
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inherit pname version; |
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sha256 = "sha256-ldhAg9zGCEYvya01s6AHzALI4dS+d0R73c62YZyk19M="; |
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}; |
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|
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nativeBuildInputs = [ |
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poetry-core |
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]; |
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|
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propagatedBuildInputs = [ |
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aiohttp |
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pydantic |
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]; |
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|
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# Tests are not shipped and source not tagged |
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# https://github.com/frwickst/pyhuum/issues/2 |
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doCheck = false; |
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pythonImportsCheck = [ |
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"huum" |
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]; |
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|
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meta = with lib; { |
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description = "Library for for Huum saunas"; |
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homepage = "https://github.com/frwickst/pyhuum"; |
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license = with licenses; [ mit ]; |
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maintainers = with maintainers; [ fab ]; |
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}; |
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} |
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