diff --git a/pkgs/applications/misc/calibre/default.nix b/pkgs/applications/misc/calibre/default.nix
index abcbe443450..0b66be1f84c 100644
--- a/pkgs/applications/misc/calibre/default.nix
+++ b/pkgs/applications/misc/calibre/default.nix
@@ -1,12 +1,12 @@
-{ stdenv, fetchurl, poppler_utils, pkgconfig, libpng
+{ stdenv, mkDerivation,  fetchurl, poppler_utils, pkgconfig, libpng
 , imagemagick, libjpeg, fontconfig, podofo, qtbase, qmake, icu, sqlite
-, makeWrapper, unrarSupport ? false, chmlib, python2Packages, libusb1, libmtp
+, unrarSupport ? false, chmlib, python2Packages, libusb1, libmtp
 , xdg_utils, makeDesktopItem, wrapGAppsHook, removeReferencesTo, qt5
 }:
 
-stdenv.mkDerivation rec {
-  version = "3.45.2";
+mkDerivation rec {
   name = "calibre-${version}";
+  version = "3.45.2";
 
   src = fetchurl {
     url = "https://download.calibre-ebook.com/${version}/${name}.tar.xz";
@@ -35,11 +35,11 @@ stdenv.mkDerivation rec {
 
   enableParallelBuilding = true;
 
-  nativeBuildInputs = [ makeWrapper pkgconfig qmake removeReferencesTo qt5.wrapQtAppsHook ];
+  nativeBuildInputs = [ pkgconfig qmake removeReferencesTo wrapGAppsHook ];
 
   buildInputs = [
     poppler_utils libpng imagemagick libjpeg
-    fontconfig podofo qtbase chmlib icu sqlite libusb1 libmtp xdg_utils wrapGAppsHook
+    fontconfig podofo qtbase chmlib icu sqlite libusb1 libmtp xdg_utils
   ] ++ (with python2Packages; [
     apsw cssselect css-parser dateutil dnspython html5-parser lxml mechanize netifaces pillow
     python pyqt5_with_qtwebkit sip
@@ -48,10 +48,6 @@ stdenv.mkDerivation rec {
     odfpy
   ]);
 
-  qtWrapperArgs = [
-    "--prefix PATH : ${poppler_utils.out}/bin"
-  ];
-
   installPhase = ''
     runHook preInstall
 
@@ -74,10 +70,6 @@ stdenv.mkDerivation rec {
     sed -i "s/env python[0-9.]*/python/" $PYFILES
     sed -i "2i import sys; sys.argv[0] = 'calibre'" $out/bin/calibre
 
-    for program in $out/bin/*; do
-      wrapQtApp $program --prefix PYTHONPATH : $PYTHONPATH
-    done
-
     # Replace @out@ by the output path.
     mkdir -p $out/share/applications/
     cp {$calibreDesktopItem,$ebookEditDesktopItem,$ebookViewerDesktopItem}/share/applications/* $out/share/applications/
@@ -91,15 +83,23 @@ stdenv.mkDerivation rec {
     runHook postInstall
   '';
 
+  # Wrap manually
+  dontWrapQtApps = true;
+  dontWrapGApps = true;
+
   # Remove some references to shrink the closure size. This reference (as of
   # 2018-11-06) was a single string like the following:
   #   /nix/store/xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx-podofo-0.9.6-dev/include/podofo/base/PdfVariant.h
   preFixup = ''
     remove-references-to -t ${podofo.dev} $out/lib/calibre/calibre/plugins/podofo.so
-  '';
-
-  postFixup = ''
 
+    for program in $out/bin/*; do
+      wrapProgram $program \
+        ''${qtWrapperArgs[@]} \
+        ''${gappsWrapperArgs[@]} \
+        --prefix PYTHONPATH : $PYTHONPATH \
+        --prefix PATH : ${poppler_utils.out}/bin
+    done
   '';
 
   disallowedReferences = [ podofo.dev ];