rPackages.Rhdf5lib: fix build

Patch is no-longer necessary; HDF5 no-longer vendored

pkgs/development/r-modules/default.nix

@@ -389,7 +389,7 @@ let
     Rglpk = [ pkgs.glpk ];
     RGtk2 = [ pkgs.gtk2.dev ];
     rhdf5 = [ pkgs.zlib ];
-    Rhdf5lib = [ pkgs.zlib.dev ];
+    Rhdf5lib = with pkgs; [ zlib.dev hdf5.dev ];
     Rhpc = with pkgs; [ zlib bzip2.dev icu xz.dev mpi pcre.dev ];
     Rhtslib = with pkgs; [ zlib.dev automake autoconf bzip2.dev xz.dev curl.dev ];
     rjags = [ pkgs.jags ];
@@ -997,10 +997,6 @@ let
       patchPhase = "patchShebangs configure";
     });
 
-    Rhdf5lib = old.Rhdf5lib.overrideDerivation (attrs: {
-      patches = [ ./patches/Rhdf5lib.patch ];
-    });
-
     rJava = old.rJava.overrideDerivation (attrs: {
       preConfigure = ''
         export JAVA_CPPFLAGS=-I${pkgs.jdk}/include/

pkgs/development/r-modules/patches/Rhdf5lib.patch

@@ -1,12 +0,0 @@
-diff --git a/configure b/configure
-index e2d292e..b13c0db 100755
---- a/configure
-+++ b/configure
-@@ -3874,6 +3874,7 @@
- 
- echo "building the hdf5 library...";
- cd ../;
-+sed -i 's#/bin/mv#mv#' configure
- ./configure --with-pic --enable-shared=no --enable-cxx --enable-hl \
-     --with-szlib=${SZIP_HOME} --with-zlib=${ZLIB_HOME} \
-     ${WITH_S3_VFD} \