|
|
|
|
@ -1,4 +1,5 @@ |
|
|
|
|
{ lib, stdenv |
|
|
|
|
{ lib |
|
|
|
|
, stdenv |
|
|
|
|
, buildPythonPackage |
|
|
|
|
, fetchPypi |
|
|
|
|
, python |
|
|
|
|
@ -8,37 +9,41 @@ |
|
|
|
|
, cython |
|
|
|
|
, dateutil |
|
|
|
|
, html5lib |
|
|
|
|
, jinja2 |
|
|
|
|
, lxml |
|
|
|
|
, numexpr |
|
|
|
|
, openpyxl |
|
|
|
|
, pytz |
|
|
|
|
, sqlalchemy |
|
|
|
|
, scipy |
|
|
|
|
, sqlalchemy |
|
|
|
|
, tables |
|
|
|
|
, xlrd |
|
|
|
|
, xlwt |
|
|
|
|
# Test Inputs |
|
|
|
|
# Test inputs |
|
|
|
|
, glibcLocales |
|
|
|
|
, hypothesis |
|
|
|
|
, pytestCheckHook |
|
|
|
|
, pytest-xdist |
|
|
|
|
, pytest-asyncio |
|
|
|
|
, XlsxWriter |
|
|
|
|
# Darwin inputs |
|
|
|
|
, runtimeShell |
|
|
|
|
, libcxx ? null |
|
|
|
|
, libcxx |
|
|
|
|
}: |
|
|
|
|
|
|
|
|
|
buildPythonPackage rec { |
|
|
|
|
pname = "pandas"; |
|
|
|
|
version = "1.2.2"; |
|
|
|
|
version = "1.2.3"; |
|
|
|
|
|
|
|
|
|
src = fetchPypi { |
|
|
|
|
inherit pname version; |
|
|
|
|
sha256 = "14ed84b463e9b84c8ff9308a79b04bf591ae3122a376ee0f62c68a1bd917a773"; |
|
|
|
|
sha256 = "078b4nncn6778ymmqn80j2q6n7fcs4d6bbaraar5nypgbaw10vyz"; |
|
|
|
|
}; |
|
|
|
|
# See https://github.com/scipy/scipy/issues/13585 and https://github.com/pandas-dev/pandas/pull/40020 |
|
|
|
|
patches = [ ./fix-tests.patch ]; |
|
|
|
|
|
|
|
|
|
nativeBuildInputs = [ cython ]; |
|
|
|
|
|
|
|
|
|
buildInputs = lib.optional stdenv.isDarwin libcxx; |
|
|
|
|
|
|
|
|
|
propagatedBuildInputs = [ |
|
|
|
|
beautifulsoup4 |
|
|
|
|
bottleneck |
|
|
|
|
@ -55,58 +60,57 @@ buildPythonPackage rec { |
|
|
|
|
xlwt |
|
|
|
|
]; |
|
|
|
|
|
|
|
|
|
checkInputs = [ pytestCheckHook glibcLocales hypothesis ]; |
|
|
|
|
checkInputs = [ |
|
|
|
|
glibcLocales |
|
|
|
|
hypothesis |
|
|
|
|
jinja2 |
|
|
|
|
pytest-asyncio |
|
|
|
|
pytest-xdist |
|
|
|
|
pytestCheckHook |
|
|
|
|
XlsxWriter |
|
|
|
|
]; |
|
|
|
|
|
|
|
|
|
# doesn't work with -Werror,-Wunused-command-line-argument |
|
|
|
|
# Doesn't work with -Werror,-Wunused-command-line-argument |
|
|
|
|
# https://github.com/NixOS/nixpkgs/issues/39687 |
|
|
|
|
hardeningDisable = lib.optional stdenv.cc.isClang "strictoverflow"; |
|
|
|
|
|
|
|
|
|
# Parallel Cythonization is broken in Python 3.8 on Darwin. Fixed in the next |
|
|
|
|
# release. https://github.com/pandas-dev/pandas/pull/30862 |
|
|
|
|
setupPyBuildFlags = lib.optionals (!(isPy38 && stdenv.isDarwin)) [ |
|
|
|
|
# As suggested by |
|
|
|
|
# https://pandas.pydata.org/pandas-docs/stable/development/contributing.html#creating-a-python-environment |
|
|
|
|
"--parallel=$NIX_BUILD_CORES" |
|
|
|
|
]; |
|
|
|
|
# For OSX, we need to add a dependency on libcxx, which provides |
|
|
|
|
# `complex.h` and other libraries that pandas depends on to build. |
|
|
|
|
postPatch = lib.optionalString stdenv.isDarwin '' |
|
|
|
|
cpp_sdk="${libcxx}/include/c++/v1"; |
|
|
|
|
echo "Adding $cpp_sdk to the setup.py common_include variable" |
|
|
|
|
substituteInPlace setup.py \ |
|
|
|
|
--replace "['pandas/src/klib', 'pandas/src']" \ |
|
|
|
|
"['pandas/src/klib', 'pandas/src', '$cpp_sdk']" |
|
|
|
|
''; |
|
|
|
|
|
|
|
|
|
doCheck = !stdenv.isAarch64; # upstream doesn't test this architecture |
|
|
|
|
|
|
|
|
|
pytestFlagsArray = [ |
|
|
|
|
"--skip-slow" |
|
|
|
|
"--skip-network" |
|
|
|
|
"--numprocesses" "0" |
|
|
|
|
]; |
|
|
|
|
|
|
|
|
|
disabledTests = [ |
|
|
|
|
# since dateutil 0.6.0 the following fails: test_fallback_plural, test_ambiguous_flags, test_ambiguous_compat |
|
|
|
|
# was supposed to be solved by https://github.com/dateutil/dateutil/issues/321, but is not the case |
|
|
|
|
"test_fallback_plural" |
|
|
|
|
"test_ambiguous_flags" |
|
|
|
|
"test_ambiguous_compat" |
|
|
|
|
# Locale-related |
|
|
|
|
"test_names" |
|
|
|
|
"test_dt_accessor_datetime_name_accessors" |
|
|
|
|
"test_datetime_name_accessors" |
|
|
|
|
# Can't import from test folder |
|
|
|
|
"test_oo_optimizable" |
|
|
|
|
# Disable IO related tests because IO data is no longer distributed |
|
|
|
|
"io" |
|
|
|
|
# KeyError Timestamp |
|
|
|
|
"test_to_excel" |
|
|
|
|
# ordering logic has changed |
|
|
|
|
"numpy_ufuncs_other" |
|
|
|
|
"order_without_freq" |
|
|
|
|
# tries to import from pandas.tests post install |
|
|
|
|
# Tries to import from pandas.tests post install |
|
|
|
|
"util_in_top_level" |
|
|
|
|
# Fails with 1.0.5 |
|
|
|
|
"test_constructor_list_frames" |
|
|
|
|
"test_constructor_with_embedded_frames" |
|
|
|
|
# tries to import compiled C extension locally |
|
|
|
|
# Tries to import compiled C extension locally |
|
|
|
|
"test_missing_required_dependency" |
|
|
|
|
# AssertionError with 1.2.3 |
|
|
|
|
"test_from_coo" |
|
|
|
|
] ++ lib.optionals stdenv.isDarwin [ |
|
|
|
|
"test_locale" |
|
|
|
|
"test_clipboard" |
|
|
|
|
]; |
|
|
|
|
|
|
|
|
|
# tests have relative paths, and need to reference compiled C extensions |
|
|
|
|
# Tests have relative paths, and need to reference compiled C extensions |
|
|
|
|
# so change directory where `import .test` is able to be resolved |
|
|
|
|
preCheck = '' |
|
|
|
|
cd $out/${python.sitePackages}/pandas |
|
|
|
|
@ -123,6 +127,8 @@ buildPythonPackage rec { |
|
|
|
|
export PATH=$(pwd):$PATH |
|
|
|
|
''; |
|
|
|
|
|
|
|
|
|
pythonImportsCheck = [ "pandas" ]; |
|
|
|
|
|
|
|
|
|
meta = with lib; { |
|
|
|
|
# https://github.com/pandas-dev/pandas/issues/14866 |
|
|
|
|
# pandas devs are no longer testing i686 so safer to assume it's broken |
|
|
|
|
|
Fabian Affolter
3 years ago
committed by