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  1. 2
      nixos/modules/services/networking/ddclient.nix
  2. 4
      nixos/tests/keepassxc.nix
  3. 4
      pkgs/applications/blockchains/clightning/default.nix
  4. 37
      pkgs/applications/misc/keepassx/community.nix
  5. 56
      pkgs/applications/misc/keepassx/darwin.patch
  6. 40
      pkgs/applications/misc/system76-keyboard-configurator/default.nix
  7. 31
      pkgs/applications/misc/yubioath-desktop/default.nix
  8. 26
      pkgs/applications/networking/cluster/kube-router/default.nix
  9. 14
      pkgs/applications/science/math/lrcalc/default.nix
  10. 10
      pkgs/applications/science/math/sage/default.nix
  11. 46
      pkgs/applications/science/math/sage/patches/Only-test-external-software-when-all-of-sage-is.patch
  12. 2
      pkgs/applications/science/math/sage/patches/configurationpy-error-verbose.patch
  13. 4
      pkgs/applications/science/math/sage/patches/docutils-0.18.1-deprecation.patch
  14. 17
      pkgs/applications/science/math/sage/patches/sphinx-docbuild-subprocesses.patch
  15. 2
      pkgs/applications/science/math/sage/python-modules/sage-docbuild.nix
  16. 2
      pkgs/applications/science/math/sage/sage-env.nix
  17. 89
      pkgs/applications/science/math/sage/sage-src.nix
  18. 15
      pkgs/applications/science/math/sage/sage.nix
  19. 16
      pkgs/applications/science/math/sage/sagedoc.nix
  20. 8
      pkgs/applications/science/math/sage/sagelib.nix
  21. 2
      pkgs/applications/video/makemkv/default.nix
  22. 4
      pkgs/desktops/gnome/extensions/update-extensions.py
  23. 99
      pkgs/development/interpreters/bats/default.nix
  24. 7
      pkgs/development/python-modules/embrace/default.nix
  25. 31
      pkgs/development/python-modules/lrcalc-python/default.nix
  26. 6
      pkgs/development/tools/fx/default.nix
  27. 4
      pkgs/development/tools/misc/devspace/default.nix
  28. 4
      pkgs/os-specific/linux/microcode/intel.nix
  29. 6
      pkgs/servers/libreddit/default.nix
  30. 6
      pkgs/tools/filesystems/afpfs-ng/default.nix
  31. 23
      pkgs/tools/misc/oci-image-tool/default.nix
  32. 11
      pkgs/tools/networking/cdpr/default.nix
  33. 4
      pkgs/tools/security/clamav/default.nix
  34. 6
      pkgs/tools/security/gnupg/1.nix
  35. 1
      pkgs/top-level/aliases.nix
  36. 4
      pkgs/top-level/all-packages.nix
  37. 2
      pkgs/top-level/python-packages.nix

@ -181,7 +181,7 @@ with lib;
};
verbose = mkOption {
default = true;
default = false;
type = bool;
description = ''
Print verbose information.

@ -62,7 +62,7 @@ import ./make-test-python.nix ({ pkgs, ...} :
machine.send_key("tab")
machine.send_chars("/home/alice/foo.keyfile")
machine.send_key("ret")
# Passwords folder is displayed
machine.wait_for_text("Passwords")
# Database is unlocked (doesn't have "[Locked]" in the title anymore)
machine.wait_for_text("foo.kdbx - KeePassXC")
'';
})

@ -21,11 +21,11 @@ let
in
stdenv.mkDerivation rec {
pname = "clightning";
version = "0.11.0.1";
version = "0.11.1";
src = fetchurl {
url = "https://github.com/ElementsProject/lightning/releases/download/v${version}/clightning-v${version}.zip";
sha256 = "e2ad6eead19a0cd8869e291c27d318cf553bb015339c1f0e8d8b30e7bc0910d8";
sha256 = "0vsh6gpv3458pfc5cggay9pw7bxjzyxpcniks9b2s3y1rxwk15xi";
};
# when building on darwin we need dawin.cctools to provide the correct libtool

@ -5,34 +5,31 @@
, darwin
, asciidoctor
, botan2
, curl
, glibcLocales
, libXi
, libXtst
, libargon2
, libgcrypt
, libgpg-error
, libsodium
, libyubikey
, libusb1
, minizip
, pcsclite
, pkg-config
, qrencode
, qtbase
, qtmacextras
, qtsvg
, qtx11extras
, quazip
, readline
, wrapGAppsHook
, wrapQtAppsHook
, yubikey-personalization
, zlib
, withKeePassBrowser ? true
, withKeePassKeeShare ? true
, withKeePassKeeShareSecure ? true
, withKeePassSSHAgent ? true
, withKeePassNetworking ? true
, withKeePassTouchID ? true
, withKeePassYubiKey ? true
, withKeePassFDOSecrets ? true
, nixosTests
@ -42,13 +39,13 @@ with lib;
stdenv.mkDerivation rec {
pname = "keepassxc";
version = "2.6.6";
version = "2.7.1";
src = fetchFromGitHub {
owner = "keepassxreboot";
repo = "keepassxc";
rev = version;
sha256 = "15rm3avdmc2x2n92zq6w1zbcranak4j6dds2sxmgdqi1ffc0a3ci";
sha256 = "sha256-BOtehDzlWhhfXj8TOFvFN4f86Hl2EC3rO4qUIl9fqq4=";
};
NIX_CFLAGS_COMPILE = optionalString stdenv.cc.isClang [
@ -66,15 +63,12 @@ stdenv.mkDerivation rec {
cmakeFlags = [
"-DKEEPASSXC_BUILD_TYPE=Release"
"-DWITH_GUI_TESTS=ON"
"-DWITH_XC_AUTOTYPE=ON"
"-DWITH_XC_UPDATECHECK=OFF"
"-DWITH_XC_YUBIKEY=ON"
]
++ (optional withKeePassBrowser "-DWITH_XC_BROWSER=ON")
++ (optional withKeePassKeeShare "-DWITH_XC_KEESHARE=ON")
++ (optional withKeePassKeeShareSecure "-DWITH_XC_KEESHARE_SECURE=ON")
++ (optional withKeePassNetworking "-DWITH_XC_NETWORKING=ON")
++ (optional (withKeePassTouchID && stdenv.isDarwin) "-DWITH_XC_TOUCHID=ON")
++ (optional (withKeePassYubiKey && stdenv.isLinux) "-DWITH_XC_YUBIKEY=ON")
++ (optional (withKeePassFDOSecrets && stdenv.isLinux) "-DWITH_XC_FDOSECRETS=ON")
++ (optional withKeePassSSHAgent "-DWITH_XC_SSHAGENT=ON");
@ -95,26 +89,22 @@ stdenv.mkDerivation rec {
buildInputs = [
curl
glibcLocales
botan2
libXi
libXtst
libargon2
libgcrypt
libgpg-error
libsodium
libyubikey
minizip
pcsclite
qrencode
qtbase
qtsvg
qtx11extras
readline
yubikey-personalization
zlib
]
++ optional withKeePassKeeShareSecure quazip
++ optional stdenv.isLinux libusb1
++ optional stdenv.isDarwin qtmacextras
++ optional (stdenv.isDarwin && withKeePassTouchID)
darwin.apple_sdk.frameworks.LocalAuthentication;
++ optional (stdenv.isDarwin && withKeePassTouchID) darwin.apple_sdk.frameworks.LocalAuthentication;
passthru.tests = nixosTests.keepassxc;
@ -131,5 +121,6 @@ stdenv.mkDerivation rec {
license = licenses.gpl2Plus;
maintainers = with maintainers; [ jonafato turion ];
platforms = platforms.linux ++ platforms.darwin;
broken = stdenv.isDarwin; # see to https://github.com/NixOS/nixpkgs/issues/172165
};
}

@ -8,46 +8,30 @@ index 74b1a7ff..0a713a32 100644
elseif(APPLE AND WITH_APP_BUNDLE)
+ set(CMAKE_INSTALL_PREFIX "${CMAKE_INSTALL_PREFIX}/Applications")
set(BUNDLE_INSTALL_DIR "${PROGNAME}.app/Contents")
set(CMAKE_INSTALL_MANDIR "${PROGNAME}.app/Contents/Resources/man")
set(CLI_INSTALL_DIR "${PROGNAME}.app/Contents/MacOS")
@@ -369,12 +370,6 @@ set(CMAKE_AUTORCC ON)
set(CMAKE_INSTALL_MANDIR "${BUNDLE_INSTALL_DIR}/Resources/man")
set(CLI_INSTALL_DIR "${BUNDLE_INSTALL_DIR}/MacOS")
@@ -470,11 +470,6 @@ set(CMAKE_AUTORCC ON)
if(APPLE)
set(CMAKE_MACOSX_RPATH TRUE)
- find_program(MACDEPLOYQT_EXE macdeployqt HINTS ${Qt5_PREFIX}/bin ENV PATH)
- find_program(MACDEPLOYQT_EXE macdeployqt HINTS ${Qt5_PREFIX}/bin ${Qt5_PREFIX}/tools/qt5/bin ENV PATH)
- if(NOT MACDEPLOYQT_EXE)
- message(FATAL_ERROR "macdeployqt is required to build on macOS")
- else()
- message(STATUS "Using macdeployqt: ${MACDEPLOYQT_EXE}")
- endif()
elseif(MINGW)
find_program(WINDEPLOYQT_EXE windeployqt HINTS ${Qt5_PREFIX}/bin ENV PATH)
if(NOT WINDEPLOYQT_EXE)
diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt
index f142f368..0742512d 100644
--- a/src/CMakeLists.txt
+++ b/src/CMakeLists.txt
@@ -351,11 +351,6 @@ if(APPLE AND WITH_APP_BUNDLE)
set(CPACK_PACKAGE_FILE_NAME "${PROGNAME}-${KEEPASSXC_VERSION}")
include(CPack)
- message(STATUS "Using macdeployqt: ${MACDEPLOYQT_EXE}")
set(MACDEPLOYQT_EXTRA_BINARIES "")
elseif(WIN32)
find_program(WINDEPLOYQT_EXE windeployqt HINTS ${Qt5_PREFIX}/bin ${Qt5_PREFIX}/tools/qt5/bin ENV PATH)
diff --git a/src/post_install/CMakeLists.txt b/src/post_install/CMakeLists.txt
index 359c891f..a6a061a3 100644
--- a/src/post_install/CMakeLists.txt
+++ b/src/post_install/CMakeLists.txt
@@ -1,7 +1,7 @@
# The install commands in this subdirectory will be executed after all the install commands in the
# current scope are ran. It is required for correct functtioning of macdeployqt.
- add_custom_command(TARGET ${PROGNAME}
- POST_BUILD
- COMMAND ${MACDEPLOYQT_EXE} ${PROGNAME}.app
- WORKING_DIRECTORY ${CMAKE_BINARY_DIR}/src
- COMMENT "Deploying app bundle")
endif()
install(TARGETS ${PROGNAME}
diff --git a/src/autotype/mac/CMakeLists.txt b/src/autotype/mac/CMakeLists.txt
index 7427450a..a0a58d71 100644
--- a/src/autotype/mac/CMakeLists.txt
+++ b/src/autotype/mac/CMakeLists.txt
@@ -8,7 +8,6 @@ if(WITH_APP_BUNDLE)
add_custom_command(TARGET keepassx-autotype-cocoa
POST_BUILD
COMMAND ${CMAKE_COMMAND} -E copy ${CMAKE_CURRENT_BINARY_DIR}/libkeepassx-autotype-cocoa.so ${PLUGIN_INSTALL_DIR}
- COMMAND ${MACDEPLOYQT_EXE} ${PROGNAME}.app -executable=${PLUGIN_INSTALL_DIR}/libkeepassx-autotype-cocoa.so -no-plugins
WORKING_DIRECTORY ${CMAKE_BINARY_DIR}/src
COMMENT "Deploying autotype plugin")
else()
-if(APPLE AND WITH_APP_BUNDLE)
+if(FALSE)
# Run macdeloyqt on the main app and any extra binaries and plugins as specified by the
# _MACDEPLOYQT_EXTRA_BINARIES global property.
# All install(TARGETS) calls should have already been called.

@ -0,0 +1,40 @@
{ lib, stdenv, fetchFromGitHub, rustPlatform, gtk3, glib, wrapGAppsHook, libusb1, hidapi, udev, pkgconfig }:
# system76-keyboard-configurator tries to spawn a daemon as root via pkexec, so
# your system needs a PolicyKit authentication agent running for the
# configurator to work.
rustPlatform.buildRustPackage rec {
pname = "system76-keyboard-configurator";
version = "1.0.0";
src = fetchFromGitHub {
owner = "pop-os";
repo = "keyboard-configurator";
rev = "v${version}";
sha256 = "sha256-CVCXNPmc/0T8vkxfU+i1nSbfusZGFVkLEveSoCePK0M=";
};
nativeBuildInputs = [
pkgconfig
glib # for glib-compile-resources
wrapGAppsHook
];
buildInputs = [
gtk3
hidapi
libusb1
udev
];
cargoSha256 = "sha256-/p2cVxOvWKkcVOYIR0N8tQSCniw+QhXhC+pus4NsQ8k=";
meta = with lib; {
description = "Keyboard configuration application for System76 keyboards and laptops";
homepage = "https://github.com/pop-os/keyboard-configurator";
license = with licenses; [ gpl3Only ];
maintainers = with maintainers; [ mirrexagon ];
platforms = platforms.linux;
};
}

@ -1,27 +1,38 @@
{ lib, stdenv, fetchurl, mkDerivation
, qmake, qtbase, qtquickcontrols2, qtgraphicaleffects
, python3, pyotherside
, pcsclite, yubikey-personalization
, yubikey-manager, makeWrapper }:
{ lib
, stdenv
, fetchurl
, mkDerivation
, qmake
, qtbase
, qtquickcontrols2
, qtgraphicaleffects
, qtmultimedia
, python3
, pyotherside
, pcsclite
, yubikey-personalization
, yubikey-manager
, makeWrapper
}:
mkDerivation rec {
pname = "yubioath-desktop";
version = "5.0.5";
version = "5.1.0";
src = fetchurl {
url = "https://developers.yubico.com/yubioath-desktop/Releases/yubioath-desktop-${version}.tar.gz";
sha256 = "05xs6xh9pi50h0668arirj0gnz11adpixgsdkds072077gasdm0g";
hash = "sha256-Lm9F4eaG9T5brAV7XDAkoj0WClmXEYIhuUzh2rk0oc0=";
};
doCheck = false;
buildInputs = [ qtbase qtquickcontrols2 qtgraphicaleffects python3 ];
buildInputs = [ qtbase qtquickcontrols2 qtgraphicaleffects qtmultimedia python3 ];
nativeBuildInputs = [ qmake makeWrapper python3.pkgs.wrapPython ];
postPatch = ''
substituteInPlace deployment.pri \
--replace '/usr/bin' "$out/bin"
substituteInPlace QZXing/QZXing-components.pri \
--replace 'target.path = $$PREFIX/lib' 'target.path = $$PREFIX/bin'
'';
pythonPath = [ yubikey-manager ];

@ -1,23 +1,33 @@
{ lib, buildGoPackage, fetchFromGitHub }:
{ lib, buildGoModule, fetchFromGitHub, testers, kube-router }:
buildGoPackage rec {
buildGoModule rec {
pname = "kube-router";
version = "1.2.2";
goPackagePath = "github.com/cloudnativelabs/kube-router";
version = "1.4.0";
src = fetchFromGitHub {
owner = "cloudnativelabs";
repo = pname;
rev = "v${version}";
sha256 = "sha256-/VToLQexvRtcBU+k8WnGEcfLfxme/hgRnhU8723BEFU=";
sha256 = "sha256-WBnJPCZHtJWckoFvE8e+eAa2EC/RA7yOMlW+Cemw53Q=";
};
vendorSha256 = "sha256-5co+288KZf/dx/jZ7xIGh6kxuW3DdbpAsrZgYob3nWk=";
CGO_ENABLED = 0;
ldflags = [
"-X ${goPackagePath}/pkg/cmd.version=${version}"
"-X ${goPackagePath}/pkg/cmd.buildDate=Nix"
"-s"
"-w"
"-X github.com/cloudnativelabs/kube-router/pkg/version.Version=${version}"
"-X github.com/cloudnativelabs/kube-router/pkg/version.BuildDate=Nix"
];
checkFlags = [ "-short" ];
passthru.tests.version = testers.testVersion {
package = kube-router;
};
meta = with lib; {
homepage = "https://www.kube-router.io/";
description = "All-in-one router, firewall and service proxy for Kubernetes";

@ -1,18 +1,17 @@
{ lib, stdenv
, fetchFromBitbucket
, fetchpatch
, autoreconfHook
}:
stdenv.mkDerivation rec {
version = "1.2";
version = "2.1";
pname = "lrcalc";
src = fetchFromBitbucket {
owner = "asbuch";
repo = "lrcalc";
rev = "lrcalc-${version}";
sha256 = "1c12d04jdyxkkav4ak8d1aqrv594gzihwhpxvc6p9js0ry1fahss";
sha256 = "0s3amf3z75hnrjyszdndrvk4wp5p630dcgyj341i6l57h43d1p4k";
};
doCheck = true;
@ -21,15 +20,6 @@ stdenv.mkDerivation rec {
autoreconfHook
];
patches = [
# Fix include syntax:
# For private includes, use `#include "..."` instead of `#include <...>`
(fetchpatch {
url = "https://bitbucket.org/asbuch/lrcalc/commits/226981a0/raw/";
sha256 = "02kaqx5s3l642rhh28kn2wg9wr098vzpknxyl4pv627lqa3lv9vm";
})
];
meta = with lib; {
description = "Littlewood-Richardson calculator";
homepage = "http://math.rutgers.edu/~asbuch/lrcalc/";

@ -48,6 +48,12 @@ let
logo64 = "${sage-src}/src/doc/common/themes/sage/static/sageicon.png";
};
jupyter-kernel-specs = pkgs.jupyter-kernel.create {
definitions = pkgs.jupyter-kernel.default // {
sagemath = jupyter-kernel-definition;
};
};
three = callPackage ./threejs-sage.nix { };
# A bash script setting various environment variables to tell sage where
@ -73,7 +79,7 @@ let
# The documentation for sage, building it takes a lot of ram.
sagedoc = callPackage ./sagedoc.nix {
inherit sage-with-env;
inherit python3 maxima;
inherit python3 maxima jupyter-kernel-specs;
};
# sagelib with added wrappers and a dependency on sage-tests to make sure thet tests were run.
@ -167,6 +173,6 @@ let
in
# A wrapper around sage that makes sure sage finds its docs (if they were build).
callPackage ./sage.nix {
inherit sage-tests sage-with-env sagedoc jupyter-kernel-definition;
inherit sage-tests sage-with-env sagedoc jupyter-kernel-specs;
inherit withDoc requireSageTests;
}

@ -1,46 +0,0 @@
diff --git a/src/sage/doctest/control.py b/src/sage/doctest/control.py
index 01f32fb8e4..4d83dc7b47 100644
--- a/src/sage/doctest/control.py
+++ b/src/sage/doctest/control.py
@@ -1253,6 +1253,7 @@ class DocTestController(SageObject):
self.log("Using --optional=" + self._optional_tags_string())
available_software._allow_external = self.options.optional is True or 'external' in self.options.optional
+ available_software._autodetect_safe = self.options.optional is True or 'sage' in self.options.optional
self.log("Features to be detected: " + ','.join(available_software.detectable()))
self.add_files()
self.expand_files_into_sources()
diff --git a/src/sage/doctest/external.py b/src/sage/doctest/external.py
index 84dae19ea5..badc61466e 100644
--- a/src/sage/doctest/external.py
+++ b/src/sage/doctest/external.py
@@ -409,6 +409,7 @@ class AvailableSoftware(object):
[]
"""
self._allow_external = True
+ self._autodetect_safe = True
# For multiprocessing of doctests, the data self._seen should be
# shared among subprocesses. Thus we use Array class from the
# multiprocessing module.
@@ -430,6 +431,8 @@ class AvailableSoftware(object):
sage: 'internet' in available_software # random, optional - internet
True
"""
+ if not self._autodetect_safe:
+ return False
try:
idx = self._indices[item]
except KeyError:
diff --git a/src/sage/features/sagemath.py b/src/sage/features/sagemath.py
index 433338766d..233623b14a 100644
--- a/src/sage/features/sagemath.py
+++ b/src/sage/features/sagemath.py
@@ -12,7 +12,7 @@ class sagemath_doc_html(StaticFile):
EXAMPLES::
- sage: from sage.features.sagemath import sagemath_doc_html
+ sage: from sage.features.sagemath import sagemath_doc_html # optional - sagemath_doc_html
sage: sagemath_doc_html().is_present() # optional - sagemath_doc_html
FeatureTestResult('sagemath_doc_html', True)
"""

@ -13,7 +13,7 @@ index 67d7d2accf..18279581e2 100644
- True
+ sage: print(output)
+ sage...[False, True]
+ sage...Exiting Sage ...
+ ...
"""
#*****************************************************************************

@ -1,11 +1,11 @@
diff --git a/src/sage/misc/sagedoc.py b/src/sage/misc/sagedoc.py
index 4c56aea078..e51a77ae8a 100644
index 08c4225b87..3a9bbe4ed0 100644
--- a/src/sage/misc/sagedoc.py
+++ b/src/sage/misc/sagedoc.py
@@ -1402,6 +1402,8 @@ class _sage_doc:
sage: identity_matrix.__doc__ in browse_sage_doc(identity_matrix, 'rst')
True
sage: browse_sage_doc(identity_matrix, 'html', False) # optional - sphinx
sage: browse_sage_doc(identity_matrix, 'html', False) # optional - sphinx sagemath_doc_html
+ ...
+ FutureWarning: The configuration setting "embed_images" will be removed in Docutils 1.2. Use "image_loading: link".
'...div...File:...Type:...Definition:...identity_matrix...'

@ -1,10 +1,10 @@
diff --git a/src/sage_docbuild/__init__.py b/src/sage_docbuild/__init__.py
index 8a5c1a19d2..21fd192642 100644
index b12d56a3c9..df9d949ed1 100644
--- a/src/sage_docbuild/__init__.py
+++ b/src/sage_docbuild/__init__.py
@@ -89,27 +89,6 @@ def builder_helper(type):
@@ -88,30 +88,6 @@ def builder_helper(type):
"""
Returns a function which builds the documentation for
Return a function which builds the documentation for
output type ``type``.
-
- TESTS:
@ -19,10 +19,13 @@ index 8a5c1a19d2..21fd192642 100644
- ....: raise BaseException("abort pool operation")
- sage: original_runsphinx, sage_docbuild.sphinxbuild.runsphinx = sage_docbuild.sphinxbuild.runsphinx, raiseBaseException
-
- sage: from sage.misc.temporary_file import tmp_dir
- sage: os.environ['SAGE_DOC'] = tmp_dir()
- sage: sage.env.var('SAGE_DOC') # random
- sage: from sage_docbuild import builder_helper, build_ref_doc
- sage: from sage_docbuild import _build_many as build_many
- sage: helper = builder_helper("html")
- sage: try:
- sage: try: # optional - sagemath_doc_html
- ....: build_many(build_ref_doc, [("docname", "en", "html", {})])
- ....: except Exception as E:
- ....: "Non-exception during docbuild: abort pool operation" in str(E)
@ -30,7 +33,7 @@ index 8a5c1a19d2..21fd192642 100644
"""
def f(self, *args, **kwds):
output_dir = self._output_dir(type)
@@ -131,10 +110,9 @@ def builder_helper(type):
@@ -139,10 +115,9 @@ def builder_helper(type):
logger.debug(build_command)
# Run Sphinx with Sage's special logger
@ -44,10 +47,10 @@ index 8a5c1a19d2..21fd192642 100644
if ABORT_ON_ERROR:
raise
diff --git a/src/sage_docbuild/sphinxbuild.py b/src/sage_docbuild/sphinxbuild.py
index d917c3e9d4..551cc8028a 100644
index a39c99ffe9..73be823684 100644
--- a/src/sage_docbuild/sphinxbuild.py
+++ b/src/sage_docbuild/sphinxbuild.py
@@ -327,3 +327,8 @@ def runsphinx():
@@ -330,3 +330,8 @@ def runsphinx():
sys.stderr = saved_stderr
sys.stdout.flush()
sys.stderr.flush()

@ -2,6 +2,7 @@
, buildPythonPackage
, sage-src
, sphinx
, jupyter-sphinx
}:
buildPythonPackage rec {
@ -11,6 +12,7 @@ buildPythonPackage rec {
propagatedBuildInputs = [
sphinx
jupyter-sphinx
];
preBuild = ''

@ -186,7 +186,7 @@ writeTextFile rec {
export SAGE_EXTCODE='${sagelib.src}/src/sage/ext_data'
# for find_library
export DYLD_LIBRARY_PATH="${lib.makeLibraryPath [stdenv.cc.libc singular]}''${DYLD_LIBRARY_PATH:+:}$DYLD_LIBRARY_PATH"
export DYLD_LIBRARY_PATH="${lib.makeLibraryPath [stdenv.cc.libc singular giac]}''${DYLD_LIBRARY_PATH:+:}$DYLD_LIBRARY_PATH"
'';
} // { # equivalent of `passthru`, which `writeTextFile` doesn't support
lib = sagelib;

@ -58,30 +58,19 @@ let
);
in
stdenv.mkDerivation rec {
version = "9.5";
version = "9.6";
pname = "sage-src";
src = fetchFromGitHub {
owner = "sagemath";
repo = "sage";
rev = version;
sha256 = "sha256-uOsLpsGpcIGs8Xr82X82MElnTB2E908gytyNJ8WVD5w=";
sha256 = "sha256-QY8Yga3hD1WhSCtA2/PVry8hHlMmC31J8jCBFtWgIU0=";
};
# Patches needed because of particularities of nix or the way this is packaged.
# The goal is to upstream all of them and get rid of this list.
nixPatches = [
# Since https://trac.sagemath.org/ticket/32174, some external features are
# marked as "safe" and get auto-detected, in which case the corresponding
# optional tests are executed. We disable auto-detection of safe features if
# we are doctesting with an "--optional" argument which does not include
# "sage", because tests from autodetected features expect context provided
# by running basic sage tests. This is necessary to test sagemath_doc_html
# separately. See https://trac.sagemath.org/ticket/26110 for a related
# upstream discussion (from the time when Sage still had optional py2/py3
# tags).
./patches/Only-test-external-software-when-all-of-sage-is.patch
# Fixes a potential race condition which can lead to transient doctest failures.
./patches/fix-ecl-race.patch
@ -120,81 +109,13 @@ stdenv.mkDerivation rec {
# https://trac.sagemath.org/ticket/32959
./patches/linbox-1.7-upgrade.patch
# https://trac.sagemath.org/ticket/33170
(fetchSageDiff {
base = "9.6.beta5";
name = "ipython-8.1-update.patch";
rev = "4d2b53f1541375861310af3a7f7109c1c2ed475d";
sha256 = "sha256-ELda/VBzsQH7NdFas69fQ35QPUoJCeLx/gxT1j7qGR8=";
})
# https://trac.sagemath.org/ticket/32968
(fetchSageDiff {
base = "9.5";
name = "sphinx-4.3-update.patch";
rev = "fc84f82f52b6f05f512cb359ec7c100f93cf8841";
sha256 = "sha256-bBbfdcnw/9LUOlY8rHJRbFJEdMXK4shosqTNaobTS1Q=";
})
# https://trac.sagemath.org/ticket/33189
(fetchSageDiff {
base = "9.5";
name = "arb-2.22-update.patch";
rev = "53532ddd4e2dc92469c1590ebf0c40f8f69bf579";
sha256 = "sha256-6SoSBvIlqvNwZV3jTB6uPdUtaWIOeNmddi2poK/WvGs=";
})
# TODO: This will not be necessary when Sphinx 4.4.1 is released,
# since some warnings introduced in 4.4.0 will be disabled by then
# (https://github.com/sphinx-doc/sphinx/pull/10126).
# https://trac.sagemath.org/ticket/33272
(fetchSageDiff {
base = "9.5";
name = "sphinx-4.4-warnings.patch";
rev = "97d7958bed441cf2ccc714d88f83d3a8426bc085";
sha256 = "sha256-y1STE0oxswnijGCsBw8eHWWqpmT1XMznIfA0vvX9pFA=";
})
# adapted from https://trac.sagemath.org/ticket/23712#comment:22
./patches/tachyon-renamed-focallength.patch
# https://trac.sagemath.org/ticket/33336
(fetchSageDiff {
base = "9.6.beta2";
name = "scipy-1.8-update.patch";
rev = "9c8235e44ffb509efa8a3ca6cdb55154e2b5066d";
sha256 = "sha256-bfc4ljNOxVnhlmxIuNbjbKl4vJXYq2tlF3Z8bbC8PWw=";
})
# https://trac.sagemath.org/ticket/33495
(fetchSageDiff {
base = "9.6.beta5";
name = "networkx-2.7-update.patch";
rev = "8452003846a7303100847d8d0ed642fc642c11d6";
sha256 = "sha256-A/XMouPlc2sjFp30L+56fBGJXydS2EtzfPOV98FCDqI=";
})
# https://trac.sagemath.org/ticket/33226
(fetchSageDiff {
base = "9.6.beta0";
name = "giac-1.7.0-45-update.patch";
rev = "33ea2adf01e9e2ce9f1e33779f0b1ac0d9d1989c";
sha256 = "sha256-DOyxahf3+IaYdkgmAReNDCorRzMgO8+yiVrJ5TW1km0=";
})
# https://trac.sagemath.org/ticket/33398
(fetchSageDiff {
base = "9.6.beta4";
name = "sympy-1.10-update.patch";
rev = "6b7c3a28656180e42163dc10f7b4a571b93e5f27";
sha256 = "sha256-fnUyM2yjHkCykKRfzQQ4glcUYmCS/fYzDzmCf0nuebk=";
# The patch contains a whitespace change to a file that didn't exist in Sage 9.5.
excludes = [ "build/*" "src/sage/manifolds/vector_bundle_fiber_element.py" ];
})
# docutils 0.18.1 now triggers Sphinx warnings. tolerate them for
# now, because patching Sphinx is not feasible.
# https://github.com/sphinx-doc/sphinx/issues/9777#issuecomment-1104481271
# now, because patching Sphinx is not feasible. remove when Sphinx
# 5.0 hits nixpkgs.
# https://github.com/sphinx-doc/sphinx/pull/10372
./patches/docutils-0.18.1-deprecation.patch
];

@ -2,8 +2,7 @@
, makeWrapper
, sage-tests
, sage-with-env
, jupyter-kernel-definition
, jupyter-kernel
, jupyter-kernel-specs
, sagedoc
, withDoc
, requireSageTests
@ -12,14 +11,6 @@
# A wrapper that makes sure sage finds its docs (if they were build) and the
# jupyter kernel spec.
let
# generate kernel spec + default kernels
kernel-specs = jupyter-kernel.create {
definitions = jupyter-kernel.default // {
sagemath = jupyter-kernel-definition;
};
};
in
stdenv.mkDerivation rec {
version = src.version;
pname = "sage";
@ -43,7 +34,7 @@ stdenv.mkDerivation rec {
--set SAGE_DOC_SRC_OVERRIDE "${src}/src/doc" ${
lib.optionalString withDoc "--set SAGE_DOC_OVERRIDE ${sagedoc}/share/doc/sage"
} \
--prefix JUPYTER_PATH : "${kernel-specs}"
--prefix JUPYTER_PATH : "${jupyter-kernel-specs}"
'';
doInstallCheck = withDoc;
@ -58,7 +49,7 @@ stdenv.mkDerivation rec {
quicktest = sage-tests.override { longTests = false; timeLimit = 600; }; # as many tests as possible in ~10m
doc = sagedoc;
lib = sage-with-env.env.lib;
kernelspec = jupyter-kernel-definition;
kernelspec = jupyter-kernel-specs.definition.sagemath;
};
meta = with lib; {

@ -1,6 +1,7 @@
{ stdenv
, sage-with-env
, python3
, jupyter-kernel-specs
, maxima
, tachyon
, jmol
@ -59,10 +60,15 @@ stdenv.mkDerivation rec {
OUTPUT="$OUTPUT_DIR/options.txt"
${sage-with-env}/bin/sage -advanced > "$OUTPUT"
${sage-with-env}/bin/sage --docbuild \
# jupyter-sphinx calls the sagemath jupyter kernel during docbuild
export JUPYTER_PATH=${jupyter-kernel-specs}
# sage --docbuild unsets JUPYTER_PATH, so we call sage_docbuild directly
# https://trac.sagemath.org/ticket/33650#comment:32
${sage-with-env}/bin/sage --python3 -m sage_docbuild \
--mathjax \
--no-pdf-links \
all html
all html < /dev/null
'';
installPhase = ''
@ -83,6 +89,10 @@ stdenv.mkDerivation rec {
doCheck = true;
checkPhase = ''
${sage-with-env}/bin/sage -t --optional=sagemath_doc_html --all
# sagemath_doc_html tests assume sage tests are being run, so we
# compromise: we run standard tests, but only on files containing
# relevant tests. as of Sage 9.6, there are only 4 such files.
grep -PRl "#.*optional.*sagemath_doc_html" ${src}/src/sage{,_docbuild} | \
xargs ${sage-with-env}/bin/sage -t --optional=sage,sagemath_doc_html
'';
}

@ -67,7 +67,9 @@
, pillow
, ipykernel
, networkx
, sphinx # TODO: this is in setup.cfg, bug should we override it?
, ptyprocess
, lrcalc-python
, sphinx # TODO: this is in setup.cfg, should we override it?
}:
assert (!blas.isILP64) && (!lapack.isILP64);
@ -157,6 +159,8 @@ buildPythonPackage rec {
networkx
jupyter-client
ipywidgets
ptyprocess
lrcalc-python
sphinx
];
@ -188,7 +192,7 @@ buildPythonPackage rec {
# Sage tests already catch any relevant API breakage.
# according to the discussion at https://trac.sagemath.org/ticket/33520,
# upper bounds will be less noisy starting from Sage 9.6.
sed -i 's/==2.1.0rc1/>=2.1.1/' ../gmpy2/install-requires.txt
sed -i 's/==0.5.1/>=0.5.1/' ../ptyprocess/install-requires.txt
sed -i 's/, <[^, ]*//' ../*/install-requires.txt
for infile in src/*.m4; do

@ -55,7 +55,7 @@ in mkDerivation {
installPhase = ''
runHook preInstall
install -Dm555 -t $out/bin out/makemkv ../makemkv-bin-${version}/bin/amd64/makemkvcon
install -Dm555 -t $out/bin out/makemkv out/mmccextr ../makemkv-bin-${version}/bin/amd64/makemkvcon
install -D -t $out/lib out/lib{driveio,makemkv,mmbd}.so.*
install -D -t $out/share/MakeMKV ../makemkv-bin-${version}/src/share/*
install -Dm444 -t $out/share/applications ../makemkv-oss-${version}/makemkvgui/share/makemkv.desktop

@ -47,10 +47,6 @@ def fetch_extension_data(uuid: str, version: str) -> Tuple[str, str]:
uuid = uuid.replace("@", "")
url: str = f"https://extensions.gnome.org/extension-data/{uuid}.v{version}.shell-extension.zip"
# TODO remove when Vitals@CoreCoding.com version != 53, this extension has a missing manifest.json
if url == 'https://extensions.gnome.org/extension-data/VitalsCoreCoding.com.v53.shell-extension.zip':
url = 'https://extensions.gnome.org/extension-data/VitalsCoreCoding.com.v53.shell-extension_v1BI2FB.zip'
# Download extension and add the zip content to nix-store
process = subprocess.run(
["nix-prefetch-url", "--unpack", "--print-path", url], capture_output=True, text=True

@ -6,6 +6,12 @@
, coreutils
, gnugrep
, ncurses
, findutils
, hostname
, parallel
, flock
, ps
, bats
, lsof
, doInstallCheck ? true
}:
@ -31,32 +37,99 @@ resholve.mkDerivation rec {
solutions = {
bats = {
scripts = [ "bin/bats" ];
scripts = [
"bin/bats"
"libexec/bats-core/*"
"lib/bats-core/*"
];
interpreter = "${bash}/bin/bash";
inputs = [ bash coreutils gnugrep ];
inputs = [
bash
coreutils
gnugrep
ncurses
findutils
hostname
parallel
flock
"lib/bats-core"
"libexec/bats-core"
];
fake = {
external = [ "greadlink" ];
external = [
"greadlink"
"shlock"
];
};
fix = {
"$BATS_ROOT" = [ "${placeholder "out"}" ];
"$BATS_LIBEXEC" = [ "${placeholder "out"}/libexec/bats-core" ];
};
keep = {
"${placeholder "out"}/libexec/bats-core/bats" = true;
source = [
"${placeholder "out"}/lib/bats-core/validator.bash"
"${placeholder "out"}/lib/bats-core/preprocessing.bash"
"$BATS_TEST_SOURCE"
"${placeholder "out"}/lib/bats-core/tracing.bash"
"${placeholder "out"}/lib/bats-core/test_functions.bash"
"$library_load_path"
"${placeholder "out"}/lib/bats-core/common.bash"
"${placeholder "out"}/lib/bats-core/semaphore.bash"
"${placeholder "out"}/lib/bats-core/formatter.bash"
];
"$report_formatter" = true;
"$formatter" = true;
"$pre_command" = true;
"$BATS_TEST_NAME" = true;
"${placeholder "out"}/libexec/bats-core/bats-exec-test" = true;
};
execer = [
/*
both blatant lies for expedience; these can certainly exec args
they may be safe here, because they may always run things that
are ultimately in libexec?
TODO: handle parallel and flock in binlore/resholve
*/
"cannot:${parallel}/bin/parallel"
"cannot:${flock}/bin/flock"
"cannot:libexec/bats-core/bats-preprocess"
# these do exec, but other internal files
"cannot:libexec/bats-core/bats-exec-file"
"cannot:libexec/bats-core/bats-exec-suite"
];
};
};
inherit doInstallCheck;
installCheckInputs = [ ncurses ] ++ lib.optionals stdenv.isDarwin [ lsof ];
installCheckPhase = ''
# TODO: cut if https://github.com/bats-core/bats-core/issues/418 allows
sed -i '/test works even if PATH is reset/a skip' test/bats.bats
passthru.tests.upstream = bats.unresholved.overrideAttrs (old: {
name = "${bats.name}-tests";
installCheckInputs = [
ncurses
parallel # skips some tests if it can't detect
flock # skips some tests if it can't detect
ps
] ++ lib.optionals stdenv.isDarwin [ lsof ];
inherit doInstallCheck;
installCheckPhase = ''
# TODO: cut if https://github.com/bats-core/bats-core/issues/418 allows
sed -i '/test works even if PATH is reset/a skip "disabled for nix build"' test/bats.bats
# TODO: cut when https://github.com/bats-core/bats-core/pull/554 allows
substituteInPlace test/parallel.bats --replace '&& type -p shlock' '|| type -p shlock'
# test generates file with absolute shebang dynamically
substituteInPlace test/install.bats --replace \
"/usr/bin/env bash" "${bash}/bin/bash"
bin/bats test
'';
# skip tests that assume bats `install.sh` will be in BATS_ROOT
rm test/root.bats
# test generates file with absolute shebang dynamically
substituteInPlace test/install.bats --replace \
"/usr/bin/env bash" "${bash}/bin/bash"
${bats}/bin/bats test
rm -rf $out
touch $out
'';
});
meta = with lib; {
homepage = "https://github.com/bats-core/bats-core";

@ -1,4 +1,5 @@
{ lib, buildPythonPackage, fetchFromSourcehut, sqlparse, wrapt, pytestCheckHook }:
{ stdenv, lib, buildPythonPackage, fetchFromSourcehut,
sqlparse, wrapt, pytestCheckHook }:
buildPythonPackage rec {
pname = "embrace";
@ -16,6 +17,10 @@ buildPythonPackage rec {
checkInputs = [ pytestCheckHook ];
pythonImportsCheck = [ "embrace" ];
# Some test for hot-reload fails on Darwin, but the rest of the library
# should remain usable. (https://todo.sr.ht/~olly/embrace-sql/4)
doCheck = !stdenv.isDarwin;
meta = with lib; {
description = "Embrace SQL keeps your SQL queries in SQL files";
homepage = "https://pypi.org/project/embrace/";

@ -0,0 +1,31 @@
{ lib
, fetchPypi
, buildPythonPackage
, cython
, pkg-config
, lrcalc
}:
buildPythonPackage rec {
pname = "lrcalc-python";
version = "2.1";
src = fetchPypi {
inherit version;
pname = "lrcalc";
sha256 = "e3a0509aeda487b412b391a52e817ca36b5c063a8305e09fd54d53259dd6aaa9";
};
nativeBuildInputs = [ cython pkg-config ];
buildInputs = [ lrcalc ];
pythonImportsCheck = [ "lrcalc" ];
meta = with lib; {
description = "Littlewood-Richardson Calculator bindings";
homepage = "https://sites.math.rutgers.edu/~asbuch/lrcalc/";
maintainers = teams.sage.members;
license = licenses.gpl3;
};
}

@ -2,16 +2,16 @@
buildGoModule rec {
pname = "fx";
version = "22.0.10";
version = "24.0.0";
src = fetchFromGitHub {
owner = "antonmedv";
repo = pname;
rev = version;
sha256 = "sha256-BoWb27sRqcYHSLhUvjRIRIkcj90FitpbrH2R3VHsRyI=";
sha256 = "sha256-Sg+mluDOGpkEUl+3BoItuPnMqs8F6o+D5xIqF0w0EIU=";
};
vendorSha256 = "sha256-ZDPRKrum2tnhscZxLzslezYs/hOOtHwAORrAWoQhXbs=";
vendorSha256 = "sha256-4hx1AZQQ4xHBTzBK0OmrTUGMK4Rfu36cmopVV4SOjCQ=";
meta = with lib; {
description = "Terminal JSON viewer";

@ -6,13 +6,13 @@
buildGoModule rec {
pname = "devspace";
version = "5.18.4";
version = "5.18.5";
src = fetchFromGitHub {
owner = "loft-sh";
repo = "devspace";
rev = "v${version}";
sha256 = "0s5117cgxgrxfki5drvg6d22dvrjffa03bi644zdl1p631r599r1";
sha256 = "1i4ir8p3xpfy8z8w8gzpk1hyzs04b5llrjd6hl2hzrxd1likl0sh";
};
vendorSha256 = null;

@ -2,13 +2,13 @@
stdenv.mkDerivation rec {
pname = "microcode-intel";
version = "20220419";
version = "20220510";
src = fetchFromGitHub {
owner = "intel";
repo = "Intel-Linux-Processor-Microcode-Data-Files";
rev = "microcode-${version}";
sha256 = "sha256-i3OhOEqyK6gJfRIPewPGb4/6k6lO0atmedEqJ2e+66U=";
sha256 = "sha256-x+8qyC7YP7co/7qLhaAtjMtyeANaZJ/r41iFl1Mut+M=";
};
nativeBuildInputs = [ iucode-tool libarchive ];

@ -8,16 +8,16 @@
rustPlatform.buildRustPackage rec {
pname = "libreddit";
version = "0.22.6";
version = "0.22.7";
src = fetchFromGitHub {
owner = "spikecodes";
repo = pname;
rev = "v${version}";
sha256 = "sha256-Dx0eVg1T9WTHeIQO9hwUoCAcUgQey8rlZ5+uxPIX0Wc=";
sha256 = "sha256-kM+XvkSxc+OsHq2hGPdpy32jQ/35AJo75PlpbeWjef0=";
};
cargoSha256 = "sha256-RGZgo9uxRmPpZzXu6AC2FPjOoZxLnh4gCjadAOTWJ4Q=";
cargoSha256 = "sha256-md56axw3tpl++wP3ga0iMX63ixu/35lhT4TA2Uo8GpI=";
buildInputs = lib.optional stdenv.isDarwin Security;

@ -11,6 +11,12 @@ stdenv.mkDerivation {
sha256 = "125jx1rsqkiifcffyjb05b2s36rllckdgjaf1bay15k9gzhwwldz";
};
# Add workaround for -fno-common toolchains like upstream gcc-10 to
# avoid build failures like:
# ld: afpcmd-cmdline_main.o:/build/source/cmdline/cmdline_afp.h:4: multiple definition of
# `full_url'; afpcmd-cmdline_afp.o:/build/source/cmdline/cmdline_afp.c:27: first defined here
NIX_CFLAGS_COMPILE = "-fcommon";
buildInputs = [ fuse readline libgcrypt gmp ];
meta = with lib; {

@ -1,23 +0,0 @@
{ lib, fetchFromGitHub, buildGoPackage }:
buildGoPackage rec {
pname = "oci-image-tool";
version = "1.0.0-rc1";
goPackagePath = "github.com/opencontainers/image-tools";
subPackages = [ "cmd/oci-image-tool" ];
src = fetchFromGitHub {
owner = "opencontainers";
repo = "image-tools";
rev = "v${version}";
sha256 = "0c4n69smqlkf0r6khy9gbg5f810qh9g8jqsl9kibb0dyswizr14r";
};
meta = {
description = "A collection of tools for working with the OCI image format specification";
homepage = "https://github.com/opencontainers/image-tools";
license = lib.licenses.asl20;
maintainers = with lib.maintainers; [ nzhang-zh ];
};
}

@ -1,4 +1,4 @@
{ lib, stdenv, fetchurl, libpcap }:
{ lib, stdenv, fetchurl, fetchpatch, libpcap }:
stdenv.mkDerivation rec {
pname = "cdpr";
@ -8,6 +8,15 @@ stdenv.mkDerivation rec {
url = "mirror://sourceforge/${pname}/${pname}/${version}/${pname}-${version}.tgz";
sha256 = "1idyvyafkk0ifcbi7mc65b60qia6hpsdb6s66j4ggqp7if6vblrj";
};
patches = [
# Pull fix pending upstream inclusion for gcc-10 compatibility:
# https://sourceforge.net/p/cdpr/bugs/3/
(fetchurl {
name = "fno-common";
url = "https://sourceforge.net/p/cdpr/bugs/3/attachment/0001-cdpr-fix-build-on-gcc-10-fno-common.patch";
sha256 = "023cvkpc4ry1pbjd91kkwj4af3hia0layk3fp8q40vh6mbr14pnp";
})
];
postPatch = ''
substituteInPlace Makefile --replace 'gcc' '"$$CC"'

@ -5,11 +5,11 @@
stdenv.mkDerivation rec {
pname = "clamav";
version = "0.103.5";
version = "0.103.6";
src = fetchurl {
url = "https://www.clamav.net/downloads/production/${pname}-${version}.tar.gz";
sha256 = "sha256-HnSx4dKoqQVkScMT9Ippg7nVug1vte8LK+atPIQaVCY=";
sha256 = "sha256-qqEuPcGfHTI7HFDXoQ+or1V+Q5AUnoZNWb3jm2rZujM=";
};
# don't install sample config files into the absolute sysconfdir folder

@ -11,6 +11,12 @@ stdenv.mkDerivation rec {
buildInputs = [ readline bzip2 ];
# Workaround build failure on -fno-common toolchains like upstream
# gcc-10. Otherwise build fails as:
# ld: ../util/libutil.a(estream-printf.o):/build/gnupg-1.4.23/util/../include/memory.h:100: multiple definition of
# `memory_debug_mode'; gpgsplit.o:/build/gnupg-1.4.23/tools/../include/memory.h:100: first defined here
NIX_CFLAGS_COMPILE = "-fcommon";
doCheck = true;
meta = with lib; {

@ -904,6 +904,7 @@ mapAliases ({
### O ###
oathToolkit = oath-toolkit; # Added 2022-04-04
oci-image-tool = throw "oci-image-tool is no longer actively maintained, and has had major deficiencies for several years."; # Added 2022-05-14;
oracleXE = throw "oracleXE has been removed, as it's heavily outdated and unmaintained"; # Added 2020-10-09
OVMF-CSM = throw "OVMF-CSM has been removed in favor of OVMFFull"; # Added 2021-10-16
OVMF-secureBoot = throw "OVMF-secureBoot has been removed in favor of OVMFFull"; # Added 2021-10-16

@ -8876,8 +8876,6 @@ with pkgs;
buildGoModule = buildGo116Module;
};
oci-image-tool = callPackage ../tools/misc/oci-image-tool { };
ocproxy = callPackage ../tools/networking/ocproxy { };
ocserv = callPackage ../tools/networking/ocserv { };
@ -23455,6 +23453,8 @@ with pkgs;
system76-firmware = callPackage ../os-specific/linux/firmware/system76-firmware { };
system76-keyboard-configurator = callPackage ../applications/misc/system76-keyboard-configurator { };
ocf-resource-agents = callPackage ../os-specific/linux/ocf-resource-agents { };
open-vm-tools = callPackage ../applications/virtualization/open-vm-tools { };

@ -5000,6 +5000,8 @@ in {
losant-rest = callPackage ../development/python-modules/losant-rest { };
lrcalc-python = callPackage ../development/python-modules/lrcalc-python { };
lru-dict = callPackage ../development/python-modules/lru-dict { };
lsassy = callPackage ../development/python-modules/lsassy { };

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