bayescan: init at 2.1 (#68191)

Co-authored-by: Dmitry Kalinkin <dmitry.kalinkin@gmail.com>
wip/yesman
Bruno Bzeznik 4 years ago committed by Dmitry Kalinkin
parent 7d38d95e76
commit f7a4e4a93a
  1. 39
      pkgs/applications/science/biology/bayescan/default.nix
  2. 2
      pkgs/top-level/all-packages.nix

@ -0,0 +1,39 @@
{ stdenv, fetchurl, unzip, llvmPackages }:
stdenv.mkDerivation rec {
pname = "bayescan";
version = "2.1";
src = fetchurl {
url = "http://cmpg.unibe.ch/software/BayeScan/files/BayeScan${version}.zip";
sha256 = "0ismima8j8z0zj9yc267rpf7z90w57b2pbqzjnayhc3ab8mcbfy6";
};
nativeBuildInputs = [ unzip ];
buildInputs = stdenv.lib.optional stdenv.cc.isClang llvmPackages.openmp;
# Disable FORTIFY_SOURCE or the binary fails with "buffer overflow"
hardeningDisable = [ "fortify" ];
sourceRoot = "BayeScan${version}/source";
postPatch = ''
substituteInPlace Makefile --replace "-static" "" \
--replace "g++" "c++"
'';
installPhase = ''
mkdir -p $out/bin
mkdir -p $out/share/doc/bayescan
cp bayescan_${version} $out/bin
cp -r ../*pdf ../input_examples ../"R functions" $out/share/doc/bayescan
'';
meta = with stdenv.lib; {
description = "Detecting natural selection from population-based genetic data";
homepage = "http://cmpg.unibe.ch/software/BayeScan";
license = licenses.gpl3;
maintainers = [ maintainers.bzizou ];
platforms = stdenv.lib.platforms.all;
};
}

@ -23701,6 +23701,8 @@ in
stdenv = gcc49Stdenv;
};
bayescan = callPackage ../applications/science/biology/bayescan { };
bedtools = callPackage ../applications/science/biology/bedtools { };
bcftools = callPackage ../applications/science/biology/bcftools { };

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