3c503aa733
rpackages.RcppParallel: Patch shebang
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Fixes hydra build error
4 years ago
c7b3e54dff
rzmq: use default zeromq
4 years ago
5b3f0c4f4a
r-statmod: Add libiconv to buildInputs
4 years ago
cb1a13ad98
R: Update CRAN and bioconductor packages
4 years ago
1c8aba8334
treewide: use blas and lapack
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This makes packages use lapack and blas, which can wrap different
BLAS/LAPACK implementations.
treewide: cleanup from blas/lapack changes
A few issues in the original treewide:
- can’t assume blas64 is a bool
- unused commented code
4 years ago
f5afc20d06
R: Update CRAN and bioconductor packages
4 years ago
dcda9df724
r-mvtnorm: add libiconv to buildInputs
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Fixes build failure with `ld: library not found for -liconv`
4 years ago
d5b5ff5ae5
rPackages.ggbio: patch away spelling mistake
4 years ago
e97ac66410
r-modules/generic-builder: Add missing iconv library to fix build on darwin ( #78965 )
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Add missing iconv dependency to fix builds of several r-modules on darwin.
4 years ago
3c525b702a
r-packages: update
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This update was primarily done to update rPackages.V8 to 3.0 which
doesn't depend on an ancient version of v8 anymore.
Also dropped the `-lv8_libplatform` linker flag. It seems as this now
part of `v8.so` as `v8_libplatform.so` doesn't exist anymore on recent
v8 versions in nixpkgs, but the headers are still there and there aren't
any "undefined reference to" errors while linking.
4 years ago
e206c37550
R: Update CRAN and bioconductor packages
4 years ago
1e840fc421
rgl: fix build
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It seems that the dev output of libGLU needs to be included explicitly
for this to work. I've also moved the libraries from nativeBuildInputs
to buildInputs to be more semantically correct (and maybe support
cross compilation, not tested though).
5 years ago
b9a558aaa4
R: Update CRAN and bioconductor packages
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Closes https://github.com/NixOS/nixpkgs/pull/75010 .
5 years ago
350d358dea
rPackages.websocket: fix build
5 years ago
c9d8624ccd
treewide: Get rid of libGLU_combined
5 years ago
4d54c9e368
rPackages.glmnet: Add missing dependency
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Fixes the error:
ld: library not found for -liconv
5 years ago
f21ac0e4dc
rPackages.ModelMetrics: fix darwin build
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This fixes the error:
auc_.cpp:2:10: fatal error: 'omp.h' file not found
#include <omp.h>
5 years ago
7deb982d6a
r-systemfonts: fix shebang of configure script
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Closes https://github.com/NixOS/nixpkgs/pull/70813 .
5 years ago
13085f13aa
r-systemfonts: fix package dependencies
5 years ago
ca05a50d83
r-data.table: add missing zlib dependency to fix the build
5 years ago
24f0ef530e
R: Update CRAN and bioconductor packages
5 years ago
8d64b03b0c
r-ucminf: fix build on Darwin
5 years ago
aefe6bc2e1
r-minqa: fix build on Darwin
5 years ago
3001a1f3ff
r-pan: fix build on Darwin
5 years ago
8df7139996
r-randomForest: fix build on Darwin
5 years ago
22a216849b
Re-Revert "Merge branch 'staging-next'"
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This reverts commit f8a8fc6c7c
5 years ago
f8a8fc6c7c
Revert "Merge branch 'staging-next'"
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This reverts commit 41af38f372f0fec244ca
5 years ago
329a88efa7
treewide: replace mysql.connector-c to libmysqlclient
5 years ago
7b8fb5c06c
treewide: remove redundant quotes
5 years ago
8e5aae5a19
Fix broken builds for rgdal and sf R packages
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Builds were failing to include PROJ, depending on proj.dev
appears to fix it.
5 years ago
eab786451f
R: Update CRAN and bioconductor packages
5 years ago
4788c7eb28
Ensure sundialr builds on macos.
5 years ago
51d78034a1
wrapQtAppsHook: Remove ad hoc Qt wrappers
5 years ago
46bca1d643
R: Update CRAN and bioconductor packages
5 years ago
00b202e34a
rPackages.git2r: Use system libgit2
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Otherwise git2r builds a bundled libgit2
5 years ago
9cb260d091
[treewide] delete unused patches
5 years ago
0a80d3dc82
R: update CRAN and Bioconductor package sets
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Closes https://github.com/NixOS/nixpkgs/pull/59186 .
5 years ago
157921f2e7
rPackages: fix missing dependency to libiconv
5 years ago
d07c3139ed
r-sys: remove obsolete dependency
5 years ago
8dcba2b842
R: update CRAN and Bioconductor package sets
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Closes https://github.com/NixOS/nixpkgs/pull/57423 .
5 years ago
7fcfbcdbc9
rPackages.phytools: fix installation
5 years ago
ec03ed450c
update R package set
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Closes https://github.com/NixOS/nixpkgs/pull/55462 .
5 years ago
48541ab6b9
R: update CRAN and BIOC package sets
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Closes https://github.com/NixOS/nixpkgs/pull/53414 .
6 years ago
6f7459b40b
R: update CRAN package set
6 years ago
a898f88d57
rstudioWrapper: include desktop file
6 years ago
3b445042ac
rPackages.littler: fix build ( #51282 )
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littler gives a wrapped called `r` (or `lr` for non-case-preserving
systems like Darwin) which works as shebang or pipe target.
The build was completely broken before (missing deps).
Symlink executables and manpage into standard locations so that this
packages also works in `environment.systemPackages`.
6 years ago
21d83e5b11
rstudioWrapper: use runCommand, local build only
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This seems more appropriate for a wrapper generator.
6 years ago
d2b467a2de
rWrapper: use runCommand, local build only
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This seems more appropriate for a wrapper generator.
6 years ago
63b39af496
pythonPackages.rpy2: various fixes ( #51084 )
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- make sure libreadline is found at runtime
- make sure python libraries are found at runtime
- add libraries necessary to pass the testsuite and standard libraries
6 years ago
5afe1e7c70
rstudio: fix qt plugins not found
6 years ago
cfhammill