.. |
EZminc
|
ezminc: mark broken
|
2 years ago |
MACS2
|
macs2: init at 2.2.7.1
|
3 years ago |
N3
|
treewide: with stdenv.lib; in meta -> with lib;
|
3 years ago |
angsd
|
angsd: init at 0.937
|
2 years ago |
ants
|
treewide: avoid use of lib.optional with list in inputs
|
3 years ago |
aragorn
|
treewide: with stdenv.lib; in meta -> with lib;
|
3 years ago |
bayescan
|
bayescan: fix the build
|
2 years ago |
bcftools
|
bcftools: 1.14 -> 1.15
|
2 years ago |
bedops
|
bedops: 2.4.39 -> 2.4.40
|
3 years ago |
bedtools
|
lzma: deprecate alias
|
3 years ago |
bftools
|
treewide: with stdenv.lib; in meta -> with lib;
|
3 years ago |
blast
|
blast: 2.12.0 -> 2.13.0
|
2 years ago |
bowtie
|
bowtie: fix build on case insensitive file systems
|
2 years ago |
bowtie2
|
bowtie2: 2.4.4 -> 2.4.5
|
2 years ago |
bppsuite
|
…
|
|
bwa
|
bwa: pull upstream fix for -fno-common tollchains
|
2 years ago |
cd-hit
|
perlPackages.ImageMagick: rename from perlPackages.PerlMagick
|
3 years ago |
clustal-omega
|
treewide: add meta.mainProgram to many packages
|
2 years ago |
cmtk
|
cmtk: add `-std=c++11` to fix build on gcc11
|
2 years ago |
conglomerate
|
treewide: stdenv.lib -> lib
|
3 years ago |
dcm2niix
|
dcm2niix: support usage of suggested Cloudflare zlib
|
2 years ago |
deeptools
|
deeptools: 3.5.0 -> 3.5.1
|
2 years ago |
delly
|
delly: 0.8.7 -> 0.9.1
|
3 years ago |
diamond
|
diamond: switch to fetchFromGitHub
|
3 years ago |
ecopcr
|
pkgs/applications: rename name to pname&version part 2
|
3 years ago |
eggnog-mapper
|
eggnog-mapper: 1.0.3 -> 2.1.7
|
2 years ago |
emboss
|
pkgs/applications: rename name to pname&version part 2
|
3 years ago |
est-sfs
|
est-sfs: fix darwin build
|
3 years ago |
exonerate
|
treewide: pkgs.pkgconfig -> pkgs.pkg-config, move pkgconfig to alias.nix
|
3 years ago |
fastp
|
fastp: 0.23.1 -> 0.23.2
|
3 years ago |
febio-studio
|
febio-studio: init at 1.6.1
|
2 years ago |
flywheel-cli
|
flywheel-cli: init at 16.2.0
|
2 years ago |
freebayes
|
freebayes: add -fcommon workaround
|
2 years ago |
genmap
|
genmap: init 1.3.0
|
3 years ago |
hisat2
|
hisat2: update homepage
|
2 years ago |
hmmer
|
hmmer: restrict platforms to x86_64
|
3 years ago |
igv
|
treewide: with stdenv.lib; in meta -> with lib;
|
3 years ago |
inormalize
|
treewide: with stdenv.lib; in meta -> with lib;
|
3 years ago |
itsx
|
treewide: with stdenv.lib; in meta -> with lib;
|
3 years ago |
iv
|
pkgs/applications: rename name to pname&version part 2
|
3 years ago |
kallisto
|
kallisto: 0.46.2 -> 0.48.0
|
2 years ago |
kent
|
lzma: deprecate alias
|
3 years ago |
kssd
|
treewide: move autoconf, automake to nativeBuildInputs
|
2 years ago |
last
|
last: 1260 -> 1268
|
2 years ago |
macse
|
treewide: convert phases that contain ":" to dont* = true (#130500)
|
3 years ago |
manta
|
treewide: with stdenv.lib; in meta -> with lib;
|
3 years ago |
megahit
|
Static build for megahit
|
2 years ago |
meme-suite
|
meme-suite: init at 5.1.1 (#118603)
|
3 years ago |
messer-slim
|
messer-slim: 3.7 -> 3.7.1
|
2 years ago |
migrate
|
treewide: fix double quoted strings in meta.description
|
3 years ago |
minc-tools
|
treewide: with stdenv.lib; in meta -> with lib;
|
3 years ago |
minc-widgets
|
treewide: stdenv.lib -> lib
|
3 years ago |
minia
|
treewide: with stdenv.lib; in meta -> with lib;
|
3 years ago |
minimap2
|
minimap2: enable aarch64 builds (#161169)
|
2 years ago |
mni_autoreg
|
treewide: with stdenv.lib; in meta -> with lib;
|
3 years ago |
mosdepth
|
mosdepth: 0.3.2 -> 0.3.3
|
2 years ago |
mrbayes
|
mrbayes: 3.2.7 -> 3.2.7a
|
3 years ago |
mrtrix
|
mrtrix: 3.0.2 -> unstable-2021-11-25
|
3 years ago |
muscle
|
treewide: stdenv.lib -> lib
|
3 years ago |
neuron
|
neuron-mpi: remove appendToName to have a consistent package name for repology
|
2 years ago |
niftyreg
|
treewide: with stdenv.lib; in meta -> with lib;
|
3 years ago |
niftyseg
|
niftyseg: switch to fetchFromGitHub
|
3 years ago |
obitools
|
obitools3: removed useless python restriction
|
3 years ago |
octopus
|
octopus: 0.7.3 -> 0.7.4
|
3 years ago |
paml
|
treewide: fix double quoted strings in meta.description
|
3 years ago |
picard-tools
|
treewide: add meta.mainProgram to many packages
|
2 years ago |
platypus
|
treewide: makeWrapper buildInputs to nativeBuildInputs
|
3 years ago |
plink-ng
|
treewide: stdenv.lib -> lib
|
3 years ago |
poretools
|
python,pythonPackages: make aliases
|
2 years ago |
prodigal
|
treewide: add targetPrefix to hardcoded references to CC=cc
|
3 years ago |
quast
|
treewide: remove nativeBuildInputs that are in stdenv
|
2 years ago |
raxml
|
raxml-mpi: remove appendToName to have a consistent package name for repology
|
2 years ago |
repseek
|
repseek: init at 9Sep2014 (#148017)
|
2 years ago |
sambamba
|
sambamba: 0.8.1 -> 0.8.2 (#155972)
|
2 years ago |
samblaster
|
samblaster: fix darwin build
|
3 years ago |
samtools
|
Static build for samtools
|
2 years ago |
seaview
|
seaview: 5.0.4 -> 5.0.5
|
3 years ago |
snpeff
|
treewide: unzip buildInputs to nativeBuildInputs (#112302)
|
3 years ago |
somatic-sniper
|
treewide: with stdenv.lib; in meta -> with lib;
|
3 years ago |
sortmerna
|
sortmerna: mark broken on darwin
|
3 years ago |
spades
|
SPAdes: 3.15.3 -> 3.15.4
|
2 years ago |
stacks
|
stacks: 2.59 -> 2.60
|
2 years ago |
star
|
star: 2.7.9a -> 2.7.10a
|
2 years ago |
strelka
|
treewide: with stdenv.lib; in meta -> with lib;
|
3 years ago |
subread
|
subread: init 2.0.3
|
3 years ago |
sumatools
|
treewide: with stdenv.lib; in meta -> with lib;
|
3 years ago |
svaba
|
lzma: deprecate alias
|
3 years ago |
tebreak
|
treewide: remove nativeBuildInputs that are in stdenv
|
2 years ago |
trimal
|
treewide: with stdenv.lib; in meta -> with lib;
|
3 years ago |
truvari
|
truvari: 2.0.2 -> 2.1.1 (#126839)
|
3 years ago |
varscan
|
varscan: deprecate phases
|
3 years ago |
vcftools
|
treewide: pkgs.pkgconfig -> pkgs.pkg-config, move pkgconfig to alias.nix
|
3 years ago |
whisper
|
treewide: with stdenv.lib; in meta -> with lib;
|
3 years ago |
xenomapper
|
python3Packages.xenomapper: move to top-level
|
2 years ago |