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52 lines
1.5 KiB
52 lines
1.5 KiB
{ lib, stdenv, fetchurl, zlib, bzip2, xz, curl, perl }:
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stdenv.mkDerivation rec {
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pname = "htslib";
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version = "1.15";
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src = fetchurl {
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url = "https://github.com/samtools/htslib/releases/download/${version}/${pname}-${version}.tar.bz2";
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sha256 = "sha256-Gp9JkRUDoi9WgXzILqm4f7fnRntf+YnKWqYcEufVMtk=";
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};
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# perl is only used during the check phase.
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nativeBuildInputs = [ perl ];
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buildInputs = [ zlib bzip2 xz curl ];
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configureFlags = if ! stdenv.hostPlatform.isStatic
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then [ "--enable-libcurl" ] # optional but strongly recommended
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else [ "--disable-libcurl" "--disable-plugins" ];
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# In the case of static builds, we need to replace the build and install phases
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buildPhase = lib.optional stdenv.hostPlatform.isStatic ''
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make AR=$AR lib-static
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make LDFLAGS=-static bgzip htsfile tabix
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'';
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installPhase = lib.optional stdenv.hostPlatform.isStatic ''
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install -d $out/bin
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install -d $out/lib
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install -d $out/include/htslib
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install -D libhts.a $out/lib
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install -m644 htslib/*h $out/include/htslib
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install -D bgzip htsfile tabix $out/bin
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'';
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preCheck = ''
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patchShebangs test/
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'';
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enableParallelBuilding = true;
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doCheck = true;
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meta = with lib; {
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description = "A C library for reading/writing high-throughput sequencing data";
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license = licenses.mit;
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homepage = "http://www.htslib.org/";
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platforms = platforms.unix;
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maintainers = [ maintainers.mimame ];
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};
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}
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