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62 lines
1.3 KiB
62 lines
1.3 KiB
{ lib
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, buildPythonPackage
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, fetchFromGitHub
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, biopython
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, docopt
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, flametree
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, numpy
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, proglog
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, pytestCheckHook
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, python-codon-tables
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, primer3
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, genome-collector
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, matplotlib
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}:
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buildPythonPackage rec {
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pname = "dnachisel";
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version = "3.2.9";
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src = fetchFromGitHub {
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owner = "Edinburgh-Genome-Foundry";
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repo = "DnaChisel";
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rev = "refs/tags/v${version}";
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sha256 = "sha256-Fg0gkI+01xIt8LQmNmRzkzd4AObg/99x34y5NclMtDQ=";
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};
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propagatedBuildInputs = [
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biopython
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docopt
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flametree
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numpy
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proglog
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python-codon-tables
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];
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checkInputs = [
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primer3
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genome-collector
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matplotlib
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pytestCheckHook
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];
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# Disable tests which requires network access
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disabledTests = [
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"test_circular_sequence_optimize_with_report"
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"test_constraints_reports"
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"test_optimize_with_report"
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"test_optimize_with_report_no_solution"
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"test_avoid_blast_matches_with_list"
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"test_avoid_phage_blast_matches"
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"test_avoid_matches_with_list"
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"test_avoid_matches_with_phage"
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];
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pythonImportsCheck = [ "dnachisel" ];
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meta = with lib; {
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homepage = "https://github.com/Edinburgh-Genome-Foundry/DnaChisel";
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description = "Optimize DNA sequences under constraints";
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license = licenses.mit;
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maintainers = with maintainers; [ prusnak ];
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};
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}
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