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64 lines
1.4 KiB
64 lines
1.4 KiB
{ lib
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, fetchFromGitHub
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, buildPythonPackage
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, cmake
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, boost
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, eigen
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, gmp
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, cgal_5 # see https://github.com/NixOS/nixpkgs/pull/94875 about cgal
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, mpfr
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, tbb
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, numpy
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, cython
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, pybind11
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, matplotlib
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, scipy
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, pytest
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, enableTBB ? false
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}:
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buildPythonPackage rec {
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pname = "gudhi";
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version = "3.4.1";
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src = fetchFromGitHub {
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owner = "GUDHI";
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repo = "gudhi-devel";
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rev = "tags/gudhi-release-${version}";
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fetchSubmodules = true;
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sha256 = "1m03qazzfraxn62l1cb11icjz4x8q2sg9c2k3syw5v0yv9ndgx1v";
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};
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patches = [ ./remove_explicit_PYTHONPATH.patch ];
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nativeBuildInputs = [ cmake numpy cython pybind11 matplotlib ];
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buildInputs = [ boost eigen gmp cgal_5 mpfr ]
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++ lib.optionals enableTBB [ tbb ];
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propagatedBuildInputs = [ numpy scipy ];
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checkInputs = [ pytest ];
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cmakeFlags = [
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"-DCMAKE_BUILD_TYPE=Release"
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"-DWITH_GUDHI_PYTHON=ON"
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"-DPython_ADDITIONAL_VERSIONS=3"
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];
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preBuild = ''
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cd src/python
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'';
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checkPhase = ''
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rm -r gudhi
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${cmake}/bin/ctest --output-on-failure
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'';
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pythonImportsCheck = [ "gudhi" "gudhi.hera" "gudhi.point_cloud" "gudhi.clustering" ];
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meta = {
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description = "Library for Computational Topology and Topological Data Analysis (TDA)";
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homepage = "https://gudhi.inria.fr/python/latest/";
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downloadPage = "https://github.com/GUDHI/gudhi-devel";
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license = with lib.licenses; [ mit gpl3 ];
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maintainers = with lib.maintainers; [ yl3dy ];
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};
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}
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