You can not select more than 25 topics
Topics must start with a letter or number, can include dashes ('-') and can be up to 35 characters long.
48 lines
1.1 KiB
48 lines
1.1 KiB
{ lib
|
|
, buildPythonPackage
|
|
, fetchFromGitHub
|
|
, pytestCheckHook
|
|
, pythonOlder
|
|
}:
|
|
|
|
buildPythonPackage rec {
|
|
pname = "dendropy";
|
|
version = "4.5.1";
|
|
format = "setuptools";
|
|
|
|
disabled = pythonOlder "3.7";
|
|
|
|
src = fetchFromGitHub {
|
|
owner = "jeetsukumaran";
|
|
repo = pname;
|
|
rev = "v${version}";
|
|
hash = "sha256-FP0+fJkkFtSysPxoHXjyMgF8pPin7aRyzmHe9bH8LlM=";
|
|
};
|
|
|
|
checkInputs = [
|
|
pytestCheckHook
|
|
];
|
|
|
|
disabledTests = [
|
|
# FileNotFoundError: [Errno 2] No such file or directory: 'paup'
|
|
"test_basic_split_count_with_incorrect_rootings_raises_error"
|
|
"test_basic_split_count_with_incorrect_weight_treatment_raises_error"
|
|
"test_basic_split_counting_under_different_rootings"
|
|
"test_group1"
|
|
# AssertionError: 6 != 5
|
|
"test_by_num_lineages"
|
|
# AttributeError: module 'collections' has no attribute 'Iterable'
|
|
"test_findall_multiple"
|
|
];
|
|
|
|
pythonImportsCheck = [
|
|
"dendropy"
|
|
];
|
|
|
|
meta = with lib; {
|
|
description = "Python library for phylogenetic computing";
|
|
homepage = "https://dendropy.org/";
|
|
license = licenses.bsd3;
|
|
maintainers = with maintainers; [ unode ];
|
|
};
|
|
}
|
|
|