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47 lines
992 B
47 lines
992 B
{ gevent
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, buildPythonPackage
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, fetchFromGitHub
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, hostname
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, pytest
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, lib, stdenv
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}:
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buildPythonPackage rec {
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pname = "ruffus";
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version = "2.8.4";
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src = fetchFromGitHub {
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owner = "cgat-developers";
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repo = pname;
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rev = "v${version}";
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sha256 = "0fnzpchwwqsy5h18fs0n90s51w25n0dx0l74j0ka6lvhjl5sxn4c";
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};
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propagatedBuildInputs = [ gevent ];
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checkInputs = [
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hostname
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pytest
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];
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# tests very flaky & hang often on darwin
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doCheck = !stdenv.isDarwin;
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# test files do indeed need to be executed separately
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checkPhase = ''
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pushd ruffus/test
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rm test_with_logger.py # spawns 500 processes
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for f in test_*.py ; do
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HOME=$TMPDIR pytest -v --disable-warnings $f
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done
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popd
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'';
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pythonImportsCheck = [ "ruffus" ];
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meta = with lib; {
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description = "Light-weight Python Computational Pipeline Management";
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homepage = "http://www.ruffus.org.uk";
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license = licenses.mit;
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maintainers = [ maintainers.kiwi ];
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};
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}
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