..
EZminc
treewide: pkgs.pkgconfig -> pkgs.pkg-config, move pkgconfig to alias.nix
3 years ago
MACS2
macs2: init at 2.2.7.1
3 years ago
N3
treewide: with stdenv.lib; in meta -> with lib;
3 years ago
angsd
angsd: init at 0.937
2 years ago
ants
treewide: avoid use of lib.optional with list in inputs
3 years ago
aragorn
treewide: with stdenv.lib; in meta -> with lib;
3 years ago
bayescan
treewide: add meta.mainProgram to many packages
2 years ago
bcftools
bcftools: 1.14 -> 1.15
2 years ago
bedops
bedops: 2.4.39 -> 2.4.40
3 years ago
bedtools
lzma: deprecate alias
3 years ago
bftools
treewide: with stdenv.lib; in meta -> with lib;
3 years ago
blast
blast: 2.12.0 -> 2.13.0
2 years ago
bowtie
bowtie: fix build on case insensitive file systems
2 years ago
bowtie2
bowtie2: 2.4.4 -> 2.4.5
2 years ago
bppsuite
…
bwa
bwa: pull upstream fix for -fno-common tollchains
2 years ago
cd-hit
perlPackages.ImageMagick: rename from perlPackages.PerlMagick
3 years ago
clustal-omega
treewide: add meta.mainProgram to many packages
2 years ago
cmtk
cmtk: add `-std=c++11` to fix build on gcc11
2 years ago
conglomerate
treewide: stdenv.lib -> lib
3 years ago
dcm2niix
dcm2niix: support usage of suggested Cloudflare zlib
2 years ago
deeptools
deeptools: 3.5.0 -> 3.5.1
2 years ago
delly
delly: 0.8.7 -> 0.9.1
3 years ago
diamond
diamond: switch to fetchFromGitHub
2 years ago
ecopcr
pkgs/applications: rename name to pname&version part 2
3 years ago
eggnog-mapper
eggnog-mapper: 1.0.3 -> 2.1.7
2 years ago
emboss
pkgs/applications: rename name to pname&version part 2
3 years ago
est-sfs
est-sfs: fix darwin build
3 years ago
exonerate
treewide: pkgs.pkgconfig -> pkgs.pkg-config, move pkgconfig to alias.nix
3 years ago
fastp
fastp: 0.23.1 -> 0.23.2
2 years ago
febio-studio
febio-studio: init at 1.6.1
2 years ago
flywheel-cli
flywheel-cli: init at 16.2.0
2 years ago
freebayes
lzma: deprecate alias
3 years ago
genmap
genmap: init 1.3.0
2 years ago
hisat2
hisat2: update homepage
2 years ago
hmmer
hmmer: restrict platforms to x86_64
3 years ago
igv
treewide: with stdenv.lib; in meta -> with lib;
3 years ago
inormalize
treewide: with stdenv.lib; in meta -> with lib;
3 years ago
itsx
treewide: with stdenv.lib; in meta -> with lib;
3 years ago
iv
pkgs/applications: rename name to pname&version part 2
3 years ago
kallisto
kallisto: 0.46.2 -> 0.48.0
2 years ago
kent
lzma: deprecate alias
3 years ago
kssd
treewide: move autoconf, automake to nativeBuildInputs
2 years ago
last
last: 1260 -> 1268
2 years ago
macse
treewide: convert phases that contain ":" to dont* = true ( #130500 )
3 years ago
manta
treewide: with stdenv.lib; in meta -> with lib;
3 years ago
megahit
Static build for megahit
2 years ago
meme-suite
meme-suite: init at 5.1.1 ( #118603 )
3 years ago
messer-slim
messer-slim: 3.7 -> 3.7.1
2 years ago
migrate
treewide: fix double quoted strings in meta.description
3 years ago
minc-tools
treewide: with stdenv.lib; in meta -> with lib;
3 years ago
minc-widgets
treewide: stdenv.lib -> lib
3 years ago
minia
treewide: with stdenv.lib; in meta -> with lib;
3 years ago
minimap2
minimap2: enable aarch64 builds ( #161169 )
2 years ago
mni_autoreg
treewide: with stdenv.lib; in meta -> with lib;
3 years ago
mosdepth
mosdepth: 0.3.2 -> 0.3.3
2 years ago
mrbayes
mrbayes: 3.2.7 -> 3.2.7a
3 years ago
mrtrix
mrtrix: 3.0.2 -> unstable-2021-11-25
2 years ago
muscle
treewide: stdenv.lib -> lib
3 years ago
neuron
neuron-mpi: remove appendToName to have a consistent package name for repology
2 years ago
niftyreg
treewide: with stdenv.lib; in meta -> with lib;
3 years ago
niftyseg
niftyseg: switch to fetchFromGitHub
2 years ago
obitools
obitools3: removed useless python restriction
3 years ago
octopus
octopus: 0.7.3 -> 0.7.4
3 years ago
paml
treewide: fix double quoted strings in meta.description
3 years ago
picard-tools
treewide: add meta.mainProgram to many packages
2 years ago
platypus
treewide: makeWrapper buildInputs to nativeBuildInputs
3 years ago
plink-ng
treewide: stdenv.lib -> lib
3 years ago
poretools
python,pythonPackages: make aliases
2 years ago
prodigal
treewide: add targetPrefix to hardcoded references to CC=cc
3 years ago
quast
treewide: remove nativeBuildInputs that are in stdenv
2 years ago
raxml
raxml-mpi: remove appendToName to have a consistent package name for repology
2 years ago
repseek
repseek: init at 9Sep2014 ( #148017 )
2 years ago
sambamba
sambamba: 0.8.1 -> 0.8.2 ( #155972 )
2 years ago
samblaster
samblaster: fix darwin build
3 years ago
samtools
Static build for samtools
2 years ago
seaview
seaview: 5.0.4 -> 5.0.5
2 years ago
snpeff
treewide: unzip buildInputs to nativeBuildInputs ( #112302 )
3 years ago
somatic-sniper
treewide: with stdenv.lib; in meta -> with lib;
3 years ago
sortmerna
sortmerna: mark broken on darwin
3 years ago
spades
SPAdes: 3.15.3 -> 3.15.4
2 years ago
stacks
stacks: 2.59 -> 2.60
2 years ago
star
star: 2.7.9a -> 2.7.10a
2 years ago
strelka
treewide: with stdenv.lib; in meta -> with lib;
3 years ago
subread
subread: init 2.0.3
2 years ago
sumatools
treewide: with stdenv.lib; in meta -> with lib;
3 years ago
svaba
lzma: deprecate alias
3 years ago
tebreak
treewide: remove nativeBuildInputs that are in stdenv
2 years ago
trimal
treewide: with stdenv.lib; in meta -> with lib;
3 years ago
truvari
truvari: 2.0.2 -> 2.1.1 ( #126839 )
3 years ago
varscan
varscan: deprecate phases
3 years ago
vcftools
treewide: pkgs.pkgconfig -> pkgs.pkg-config, move pkgconfig to alias.nix
3 years ago
whisper
treewide: with stdenv.lib; in meta -> with lib;
3 years ago
xenomapper
python3Packages.xenomapper: move to top-level
2 years ago
Theodore Ni
81046b393b