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68 lines
1.8 KiB
68 lines
1.8 KiB
{ lib
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, stdenv
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, fetchFromGitHub
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, substituteAll
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, cmake
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, openjpeg
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, libyamlcpp
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, batchVersion ? false
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, withJpegLs ? true
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, withOpenJpeg ? true
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, withCloudflareZlib ? true
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}:
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let
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cloudflareZlib = fetchFromGitHub {
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owner = "ningfei";
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repo = "zlib";
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# HEAD revision of the gcc.amd64 branch on 2022-04-14. Reminder to update
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# whenever bumping package version.
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rev = "fda61188d1d4dcd21545c34c2a2f5cc9b0f5db4b";
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sha256 = "sha256-qySFwY0VI2BQLO2XoCZeYshXEDnHh6SmJ3MvcBUROWU=";
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};
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in
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stdenv.mkDerivation rec {
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version = "1.0.20211006";
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pname = "dcm2niix";
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src = fetchFromGitHub {
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owner = "rordenlab";
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repo = "dcm2niix";
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rev = "v${version}";
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sha256 = "sha256-fQAVOzynMdSLDfhcYWcaXkFW/mnv4zySGLVJNE7ql/c=";
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};
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patches = lib.optionals withCloudflareZlib [
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(substituteAll {
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src = ./dont-fetch-external-libs.patch;
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inherit cloudflareZlib;
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})
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];
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nativeBuildInputs = [ cmake ];
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buildInputs = lib.optionals batchVersion [ libyamlcpp ]
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++ lib.optionals withOpenJpeg [ openjpeg openjpeg.dev ];
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cmakeFlags = lib.optionals batchVersion [
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"-DBATCH_VERSION=ON"
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"-DYAML-CPP_DIR=${libyamlcpp}/lib/cmake/yaml-cpp"
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] ++ lib.optionals withJpegLs [
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"-DUSE_JPEGLS=ON"
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] ++ lib.optionals withOpenJpeg [
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"-DUSE_OPENJPEG=ON"
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"-DOpenJPEG_DIR=${openjpeg}/lib/${openjpeg.pname}-${lib.versions.majorMinor openjpeg.version}"
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] ++ lib.optionals withCloudflareZlib [
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"-DZLIB_IMPLEMENTATION=Cloudflare"
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];
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meta = with lib; {
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description = "DICOM to NIfTI converter";
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longDescription = ''
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dcm2niix is designed to convert neuroimaging data from the DICOM format to the NIfTI format.
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'';
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homepage = "https://www.nitrc.org/projects/dcm2nii";
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license = licenses.bsd3;
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maintainers = with maintainers; [ ashgillman rbreslow ];
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platforms = platforms.all;
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};
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}
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