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52 lines
1.1 KiB
52 lines
1.1 KiB
{ lib
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, buildPythonPackage
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, fetchPypi
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, cython
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, lockfile
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, cachecontrol
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, decorator
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, h5py
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, ipython
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, matplotlib
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, natsort
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, numpy
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, pandas
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, scipy
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, hdmedians
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, scikit-learn
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, coverage
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, python
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, isPy3k
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}:
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buildPythonPackage rec {
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version = "0.5.7";
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pname = "scikit-bio";
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disabled = !isPy3k;
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src = fetchPypi {
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inherit pname version;
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sha256 = "sha256-Y0PKDGIeL8xdHAQsi+MgBmTFMllWqDvqdRzxvMddHak=";
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};
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nativeBuildInputs = [ cython ];
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checkInputs = [ coverage ];
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propagatedBuildInputs = [ lockfile cachecontrol decorator ipython matplotlib natsort numpy pandas scipy h5py hdmedians scikit-learn ];
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# cython package not included for tests
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doCheck = false;
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checkPhase = ''
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${python.interpreter} -m skbio.test
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'';
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pythonImportsCheck = [ "skbio" ];
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meta = with lib; {
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homepage = "http://scikit-bio.org/";
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description = "Data structures, algorithms and educational resources for bioinformatics";
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license = licenses.bsd3;
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platforms = [ "x86_64-linux" "x86_64-darwin" ];
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maintainers = [ maintainers.costrouc ];
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};
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}
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