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61 lines
1.5 KiB
61 lines
1.5 KiB
{ stdenv
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, lib
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, fetchurl
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, unzip
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, makeDesktopItem
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, jre
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}:
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let
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desktopItem = makeDesktopItem {
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name = "jmol";
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exec = "jmol";
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desktopName = "JMol";
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genericName = "Molecular Modeler";
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mimeTypes = [
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"chemical/x-pdb"
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"chemical/x-mdl-molfile"
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"chemical/x-mol2"
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"chemical/seq-aa-fasta"
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"chemical/seq-na-fasta"
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"chemical/x-xyz"
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"chemical/x-mdl-sdf"
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];
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categories = [ "Graphics" "Education" "Science" "Chemistry" ];
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};
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in
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stdenv.mkDerivation rec {
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version = "14.32.45";
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pname = "jmol";
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src = let
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baseVersion = "${lib.versions.major version}.${lib.versions.minor version}";
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in fetchurl {
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url = "mirror://sourceforge/jmol/Jmol/Version%20${baseVersion}/Jmol%20${version}/Jmol-${version}-binary.tar.gz";
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sha256 = "sha256-9bcOwORHLZfn95RFur4JdP3Djpq8K8utnWIsniqKAI4=";
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};
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patchPhase = ''
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sed -i -e "4s:.*:command=${jre}/bin/java:" -e "10s:.*:jarpath=$out/share/jmol/Jmol.jar:" -e "11,21d" jmol
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'';
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installPhase = ''
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mkdir -p "$out/share/jmol" "$out/bin"
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${unzip}/bin/unzip jsmol.zip -d "$out/share/"
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cp *.jar jmol.sh "$out/share/jmol"
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cp -r ${desktopItem}/share/applications $out/share
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cp jmol $out/bin
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'';
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enableParallelBuilding = true;
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meta = with lib; {
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description = "A Java 3D viewer for chemical structures";
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homepage = "https://sourceforge.net/projects/jmol";
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license = licenses.lgpl2;
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platforms = platforms.all;
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maintainers = with maintainers; [ mounium ] ++ teams.sage.members;
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};
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}
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