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44 lines
1.2 KiB
44 lines
1.2 KiB
{ lib, stdenv, fetchurl, jre, makeWrapper, substituteAll, coreutils }:
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stdenv.mkDerivation rec {
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pname = "cytoscape";
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version = "3.9.1";
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src = fetchurl {
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url = "https://github.com/cytoscape/cytoscape/releases/download/${version}/${pname}-unix-${version}.tar.gz";
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sha256 = "sha256-I4C2yGiIygnFUkRBC4LBSQFgjZlVKCoQGRphynVpscw=";
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};
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patches = [
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# By default, gen_vmoptions.sh tries to store custom options in $out/share
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# at run time. This patch makes sure $HOME is used instead.
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(substituteAll {
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src = ./gen_vmoptions_to_homedir.patch;
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inherit coreutils;
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})
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];
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nativeBuildInputs = [ makeWrapper ];
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buildInputs = [ jre ];
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installPhase = ''
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mkdir -pv $out/{share,bin}
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cp -Rv * $out/share/
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ln -s $out/share/cytoscape.sh $out/bin/cytoscape
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wrapProgram $out/share/cytoscape.sh \
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--set JAVA_HOME "${jre}" \
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--set JAVA "${jre}/bin/java"
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chmod +x $out/bin/cytoscape
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'';
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meta = {
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homepage = "http://www.cytoscape.org";
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description = "A general platform for complex network analysis and visualization";
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license = lib.licenses.lgpl21;
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maintainers = [lib.maintainers.mimame];
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platforms = lib.platforms.unix;
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};
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}
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