You can not select more than 25 topics
Topics must start with a letter or number, can include dashes ('-') and can be up to 35 characters long.
33 lines
1.0 KiB
33 lines
1.0 KiB
{ lib
|
|
, buildPythonPackage
|
|
, fetchFromGitHub
|
|
, pytest
|
|
}:
|
|
|
|
buildPythonPackage rec {
|
|
pname = "PyVCF";
|
|
version = "0.6.8";
|
|
|
|
src = fetchFromGitHub {
|
|
owner = "jamescasbon";
|
|
repo = "PyVCF";
|
|
rev = "476169cd457ba0caa6b998b301a4d91e975251d9";
|
|
sha256 = "0qf9lwj7r2hjjp4bd4vc7nayrhblfm4qcqs4dbd43a6p4bj2jv5p";
|
|
};
|
|
|
|
checkInputs = [ pytest ];
|
|
|
|
meta = with lib; {
|
|
homepage = "https://pyvcf.readthedocs.io/en/latest/index.html";
|
|
description = "A VCF (Variant Call Format) Parser for Python, supporting version 4.0 and 4.1";
|
|
license = licenses.bsd3;
|
|
maintainers = with maintainers; [ scalavision ];
|
|
longDescription = ''
|
|
The intent of this module is to mimic the csv module in the Python stdlib,
|
|
as opposed to more flexible serialization formats like JSON or YAML.
|
|
vcf will attempt to parse the content of each record based on the data
|
|
types specified in the meta-information lines
|
|
'';
|
|
broken = true; # uses the 2to3 feature, that got removed in setuptools 0.58
|
|
};
|
|
}
|
|
|