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66 lines
1.2 KiB
66 lines
1.2 KiB
{ lib
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, buildPythonPackage
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, fetchFromGitHub
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, nose
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, numpy
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, scikit-learn
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, scipy
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, numba
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, pynndescent
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, tensorflow
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, tqdm
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, pytestCheckHook
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, keras
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}:
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buildPythonPackage rec {
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pname = "umap-learn";
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version = "0.5.3";
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src = fetchFromGitHub {
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owner = "lmcinnes";
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repo = "umap";
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rev = version;
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sha256 = "sha256-S2+k7Ec4AxsN6d0GUGnU81oLnBgmlZp8OmUFCNaUJYw=";
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};
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propagatedBuildInputs = [
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numpy
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scikit-learn
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scipy
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numba
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pynndescent
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tqdm
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];
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checkInputs = [
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nose
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tensorflow
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pytestCheckHook
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keras
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];
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preCheck = ''
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export HOME=$TMPDIR
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'';
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disabledTests = [
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# Plot functionality requires additional packages.
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# These test also fail with 'RuntimeError: cannot cache function' error.
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"test_umap_plot_testability"
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"test_plot_runs_at_all"
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# Flaky test. Fails with AssertionError sometimes.
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"test_sparse_hellinger"
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# tensorflow maybe incompatible? https://github.com/lmcinnes/umap/issues/821
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"test_save_load"
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];
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meta = with lib; {
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description = "Uniform Manifold Approximation and Projection";
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homepage = "https://github.com/lmcinnes/umap";
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license = licenses.bsd3;
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maintainers = [ maintainers.costrouc ];
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};
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}
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