You can not select more than 25 topics
Topics must start with a letter or number, can include dashes ('-') and can be up to 35 characters long.
49 lines
1.1 KiB
49 lines
1.1 KiB
{ lib
|
|
, buildPythonPackage
|
|
, fetchPypi
|
|
, isPy27
|
|
, pytest
|
|
, mock
|
|
, dcm2niix
|
|
, nibabel
|
|
, pydicom
|
|
, nipype
|
|
, dcmstack
|
|
, etelemetry
|
|
, filelock
|
|
}:
|
|
|
|
buildPythonPackage rec {
|
|
version = "0.8.0";
|
|
pname = "heudiconv";
|
|
|
|
disabled = isPy27;
|
|
|
|
src = fetchPypi {
|
|
inherit pname version;
|
|
#sha256 = "0gzqqa4pzhywdbvks2qjniwhr89sgipl5k7h9hcjs7cagmy9gb05";
|
|
sha256 = "1r6y93125mc84c09970ifps5xysp8ffp62rwlzili3q2k1m3fh4v";
|
|
};
|
|
|
|
postPatch = ''
|
|
# doesn't exist as a separate package with Python 3:
|
|
substituteInPlace heudiconv/info.py --replace "'pathlib'," ""
|
|
'';
|
|
|
|
propagatedBuildInputs = [
|
|
dcm2niix nibabel pydicom nipype dcmstack etelemetry filelock
|
|
];
|
|
|
|
checkInputs = [ dcm2niix pytest mock ];
|
|
|
|
# test_monitor and test_dlad require 'inotify' and 'datalad' respectively,
|
|
# and these aren't in Nixpkgs
|
|
checkPhase = "pytest -k 'not test_dlad and not test_monitor' heudiconv/tests";
|
|
|
|
meta = with lib; {
|
|
homepage = "https://heudiconv.readthedocs.io";
|
|
description = "Flexible DICOM converter for organizing imaging data";
|
|
license = licenses.asl20;
|
|
maintainers = with maintainers; [ bcdarwin ];
|
|
};
|
|
}
|
|
|