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56 lines
1.7 KiB
56 lines
1.7 KiB
{ lib, fetchPypi, isPy27, buildPythonPackage, pythonOlder
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, numpy, hdf5, cython, six, pkgconfig, unittest2
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, mpi4py ? null, openssh, pytestCheckHook, cached-property }:
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assert hdf5.mpiSupport -> mpi4py != null && hdf5.mpi == mpi4py.mpi;
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let
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mpi = hdf5.mpi;
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mpiSupport = hdf5.mpiSupport;
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in buildPythonPackage rec {
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version = "3.6.0";
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pname = "h5py";
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disabled = isPy27;
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src = fetchPypi {
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inherit pname version;
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sha256 = "8752d2814a92aba4e2b2a5922d2782d0029102d99caaf3c201a566bc0b40db29";
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};
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# avoid strict pinning of numpy
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postPatch = ''
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substituteInPlace setup.py \
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--replace "numpy ==" "numpy >=" \
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--replace "mpi4py ==" "mpi4py >="
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'';
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HDF5_DIR = "${hdf5}";
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HDF5_MPI = if mpiSupport then "ON" else "OFF";
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postConfigure = ''
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# Needed to run the tests reliably. See:
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# https://bitbucket.org/mpi4py/mpi4py/issues/87/multiple-test-errors-with-openmpi-30
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${lib.optionalString mpiSupport "export OMPI_MCA_rmaps_base_oversubscribe=yes"}
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'';
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preBuild = if mpiSupport then "export CC=${mpi}/bin/mpicc" else "";
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# tests now require pytest-mpi, which isn't available and difficult to package
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doCheck = false;
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checkInputs = lib.optional isPy27 unittest2 ++ [ pytestCheckHook openssh ];
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nativeBuildInputs = [ pkgconfig cython ];
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buildInputs = [ hdf5 ]
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++ lib.optional mpiSupport mpi;
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propagatedBuildInputs = [ numpy six]
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++ lib.optionals mpiSupport [ mpi4py openssh ]
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++ lib.optionals (pythonOlder "3.8") [ cached-property ];
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pythonImportsCheck = [ "h5py" ];
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meta = with lib; {
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description = "Pythonic interface to the HDF5 binary data format";
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homepage = "http://www.h5py.org/";
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license = licenses.bsd3;
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maintainers = [ ];
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};
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}
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