You can not select more than 25 topics
Topics must start with a letter or number, can include dashes ('-') and can be up to 35 characters long.
56 lines
1.6 KiB
56 lines
1.6 KiB
{ lib, stdenv, fetchurl, python3, runtimeShell }:
|
|
|
|
stdenv.mkDerivation rec {
|
|
pname = "cmdstan";
|
|
version = "2.29.2";
|
|
|
|
# includes stanc binaries needed to build cmdstand
|
|
src = fetchurl {
|
|
url = "https://github.com/stan-dev/cmdstan/releases/download/v${version}/cmdstan-${version}.tar.gz";
|
|
sha256 = "sha256-VntTH6c//fcGyqF+szROHftB6GmTyvi6QIdf+RAzUVM=";
|
|
};
|
|
|
|
buildFlags = [ "build" ];
|
|
enableParallelBuilding = true;
|
|
|
|
doCheck = true;
|
|
checkInputs = [ python3 ];
|
|
|
|
postPatch = ''
|
|
substituteInPlace stan/lib/stan_math/make/libraries \
|
|
--replace "/usr/bin/env bash" "bash"
|
|
patchShebangs .
|
|
'';
|
|
|
|
checkPhase = ''
|
|
./runCmdStanTests.py -j$NIX_BUILD_CORES src/test/interface
|
|
'';
|
|
|
|
installPhase = ''
|
|
mkdir -p $out/opt $out/bin
|
|
cp -r . $out/opt/cmdstan
|
|
ln -s $out/opt/cmdstan/bin/stanc $out/bin/stanc
|
|
ln -s $out/opt/cmdstan/bin/stansummary $out/bin/stansummary
|
|
cat > $out/bin/stan <<EOF
|
|
#!${runtimeShell}
|
|
make -C $out/opt/cmdstan "\$(realpath "\$1")"
|
|
EOF
|
|
chmod a+x $out/bin/stan
|
|
'';
|
|
|
|
# Hack to ensure that patchelf --shrink-rpath get rids of a $TMPDIR reference.
|
|
preFixup = "rm -rf $(pwd)";
|
|
|
|
meta = {
|
|
description = "Command-line interface to Stan";
|
|
longDescription = ''
|
|
Stan is a probabilistic programming language implementing full Bayesian
|
|
statistical inference with MCMC sampling (NUTS, HMC), approximate Bayesian
|
|
inference with Variational inference (ADVI) and penalized maximum
|
|
likelihood estimation with Optimization (L-BFGS).
|
|
'';
|
|
homepage = "https://mc-stan.org/interfaces/cmdstan.html";
|
|
license = lib.licenses.bsd3;
|
|
platforms = lib.platforms.all;
|
|
};
|
|
}
|
|
|