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@ -1,4 +1,4 @@ |
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{ lib, stdenv, fetchFromGitHub, zlib }: |
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{ lib, stdenv, fetchFromGitHub, fetchpatch, zlib }: |
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stdenv.mkDerivation rec { |
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stdenv.mkDerivation rec { |
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pname = "bowtie"; |
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pname = "bowtie"; |
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@ -11,6 +11,26 @@ stdenv.mkDerivation rec { |
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sha256 = "sha256-mWItmrTMPst/NnzSpxxTHcBztDqHPCza9yOsZPwp7G4="; |
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sha256 = "sha256-mWItmrTMPst/NnzSpxxTHcBztDqHPCza9yOsZPwp7G4="; |
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}; |
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}; |
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patches = [ |
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# Without this patch, compiling with clang on an M1 Mac fails because |
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# 'cpuid.h' is included. It only works on x86 and throws an error. |
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(fetchpatch { |
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name = "fix_compilation_on_arm64"; |
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url = "https://github.com/BenLangmead/bowtie/commit/091d72f4cb69ca0713704d38bd7f9b37e6c4ff2d.patch"; |
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sha256 = "sha256-XBvgICUBnE5HKpJ36IHTDiKjJgLFKETsIaJC46uN+2I="; |
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}) |
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# Without this patch, compilation adds the current source directory to the |
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# include search path, and #include <version> in standard library code can |
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# end up picking the unrelated VERSION source code file on case-insensitive |
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# file systems. |
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(fetchpatch { |
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name = "fix_include_search_path"; |
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url = "https://github.com/BenLangmead/bowtie/commit/c208b9db936eab0bc3ffdf0182b4f59a9017a1c4.patch"; |
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sha256 = "sha256-772EE+oWFWXssSMabPryb0AfIS1tC10mPTRCBm7RrUs="; |
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}) |
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]; |
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buildInputs = [ zlib ]; |
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buildInputs = [ zlib ]; |
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installFlags = [ "prefix=$(out)" ]; |
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installFlags = [ "prefix=$(out)" ]; |
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